Wall clock time and date at job start Tue Mar 31 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00386 * 2 1 4 4 C 1.53007 * 109.47220 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47099 * 64.99614 * 4 3 2 6 6 C 1.34774 * 120.00423 * 270.06917 * 5 4 3 7 7 C 1.50704 * 119.99755 * 4.83738 * 6 5 4 8 8 O 1.21284 * 120.00376 * 184.83315 * 6 5 4 9 9 C 1.39002 * 119.99978 * 90.07464 * 5 4 3 10 10 N 1.29624 * 124.94594 * 185.47721 * 9 5 4 11 11 C 1.31991 * 116.91428 * 180.17612 * 10 9 5 12 12 C 1.50696 * 122.71297 * 179.79559 * 11 10 9 13 13 N 1.46497 * 109.47366 * 274.70795 * 12 11 10 14 14 C 1.36939 * 120.00376 * 89.99837 * 13 12 11 15 15 H 1.07995 * 120.00165 * 219.07663 * 14 13 12 16 16 C 1.38811 * 119.99756 * 39.07380 * 14 13 12 17 17 N 1.31614 * 119.99892 * 201.96416 * 16 14 13 18 18 Si 1.86807 * 120.00005 * 21.96047 * 16 14 13 19 19 H 1.48496 * 109.47063 * 265.10500 * 18 16 14 20 20 H 1.48496 * 109.46902 * 25.10365 * 18 16 14 21 21 H 1.48498 * 109.46649 * 145.10054 * 18 16 14 22 22 C 1.46503 * 119.99826 * 270.00287 * 13 12 11 23 23 C 1.53000 * 117.49740 * 183.76939 * 22 13 12 24 24 C 1.52996 * 60.00056 * 252.50774 * 23 22 13 25 25 C 1.33439 * 114.56797 * 359.52334 * 11 10 9 26 26 S 1.70972 * 124.94157 * 5.15996 * 9 5 4 27 27 H 1.09003 * 109.46445 * 300.00162 * 1 2 3 28 28 H 1.08998 * 109.47027 * 59.99156 * 1 2 3 29 29 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47203 * 60.00503 * 3 2 1 31 31 H 1.08999 * 109.47192 * 299.99956 * 3 2 1 32 32 H 1.08998 * 109.46685 * 305.00046 * 4 3 2 33 33 H 1.08994 * 109.47337 * 185.00012 * 4 3 2 34 34 H 1.08994 * 109.47092 * 5.44299 * 7 6 5 35 35 H 1.08993 * 109.47514 * 125.45030 * 7 6 5 36 36 H 1.09004 * 109.47143 * 245.44812 * 7 6 5 37 37 H 1.09000 * 109.47160 * 154.70553 * 12 11 10 38 38 H 1.09006 * 109.47136 * 34.70710 * 12 11 10 39 39 H 0.97004 * 119.99883 * 179.97438 * 17 16 14 40 40 H 1.09006 * 115.55044 * 329.47042 * 22 13 12 41 41 H 1.09004 * 117.50005 * 359.97438 * 23 22 13 42 42 H 1.09003 * 117.50320 * 145.01855 * 23 22 13 43 43 H 1.08999 * 117.49891 * 252.51341 * 24 23 22 44 44 H 1.08998 * 117.52109 * 107.47640 * 24 23 22 45 45 H 1.08004 * 125.96798 * 180.22679 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0935 -0.7758 -1.3359 7 6 3.6691 -1.6428 -0.1787 8 8 4.5410 -1.2839 -2.3422 9 6 4.2720 1.3577 -2.3549 10 7 4.5706 0.9092 -3.5338 11 6 4.8284 1.8066 -4.4668 12 6 5.1936 1.4307 -5.8797 13 7 6.6347 1.1799 -5.9613 14 6 7.1238 -0.0804 -5.7430 15 1 8.0452 -0.2147 -5.1958 16 6 6.4354 -1.1852 -6.2250 17 7 6.6279 -2.3687 -5.6823 18 14 5.2356 -0.9921 -7.6437 19 1 3.8621 -0.8104 -7.1092 20 1 5.6129 0.1944 -8.4530 21 1 5.2783 -2.2069 -8.4967 22 6 7.5525 2.2774 -6.2764 23 6 9.0353 1.9350 -6.4343 24 6 8.5530 2.6939 -5.1964 25 6 4.7337 3.0737 -4.0591 26 16 4.2882 3.0673 -2.3547 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9787 2.1763 0.0889 34 1 3.2073 -1.0228 0.5896 35 1 2.9515 -2.3862 -0.5256 36 1 4.5418 -2.1466 0.2371 37 1 4.9280 2.2459 -6.5528 38 1 4.6512 0.5302 -6.1678 39 1 6.1466 -3.1407 -6.0189 40 1 7.1459 3.0616 -6.9152 41 1 9.3281 0.8932 -6.3033 42 1 9.6047 2.4938 -7.1771 43 1 8.8049 3.7519 -5.1248 44 1 8.5280 2.1516 -4.2512 45 1 4.9014 3.9501 -4.6676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072960826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:51 Heat of formation + Delta-G solvation = 25.874695 kcal Electronic energy + Delta-G solvation = -28504.651816 eV Core-core repulsion = 24651.616912 eV Total energy + Delta-G solvation = -3853.034904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.64778 -40.21987 -38.87584 -38.66039 -36.84600 -35.27877 -33.51421 -31.84788 -30.88379 -29.92102 -27.73026 -27.21168 -26.10051 -25.08654 -24.24279 -22.99800 -21.60438 -21.53939 -20.01432 -19.32940 -18.34905 -17.94733 -17.65075 -17.21755 -17.16079 -16.93821 -16.87158 -16.28633 -15.70253 -15.53137 -15.27080 -15.16534 -14.75404 -14.56487 -14.28428 -14.11445 -13.91844 -13.75672 -13.45446 -13.32275 -12.96482 -12.91581 -12.76454 -12.74605 -12.50055 -12.27197 -12.05815 -11.90499 -11.73375 -11.40712 -11.29842 -11.12720 -10.92258 -10.62973 -10.55000 -10.13574 -9.98329 -9.00226 -8.63414 -8.14773 -5.55472 -0.10902 0.17060 0.76559 1.27802 1.32411 1.46011 1.56794 1.74653 2.15824 2.44123 2.80305 3.07301 3.28011 3.36113 3.48321 3.75807 3.91025 3.99407 4.25743 4.27489 4.33472 4.38780 4.40963 4.43058 4.48073 4.49856 4.56269 4.60820 4.63942 4.65343 4.71970 4.89631 4.91207 4.92534 5.01064 5.05436 5.09557 5.30992 5.40831 5.52661 5.93932 6.05184 6.19221 6.19932 6.98675 7.06770 7.32010 7.65594 8.02528 9.04301 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004465 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.426395 B = 6269.038359 C = 7249.573457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.040 3.960 4 C 0.094 3.906 5 N -0.526 5.526 6 C 0.491 3.509 7 C -0.146 4.146 8 O -0.535 6.535 9 C 0.237 3.763 10 N -0.510 5.510 11 C 0.066 3.934 12 C 0.197 3.803 13 N -0.571 5.571 14 C -0.244 4.244 15 H 0.022 0.978 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.942 3.058 19 H -0.292 1.292 20 H -0.238 1.238 21 H -0.307 1.307 22 C 0.107 3.893 23 C -0.186 4.186 24 C -0.202 4.202 25 C -0.269 4.269 26 S 0.169 5.831 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.256 0.744 40 H 0.134 0.866 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.043 0.957 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 16.637 15.579 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C -0.038 4.038 4 C -0.026 4.026 5 N -0.258 5.258 6 C 0.279 3.721 7 C -0.205 4.205 8 O -0.407 6.407 9 C -0.130 4.130 10 N -0.231 5.231 11 C -0.067 4.067 12 C 0.070 3.930 13 N -0.290 5.290 14 C -0.374 4.374 15 H 0.039 0.961 16 C -0.204 4.204 17 N -0.582 5.582 18 Si 0.770 3.230 19 H -0.221 1.221 20 H -0.161 1.161 21 H -0.235 1.235 22 C 0.000 4.000 23 C -0.224 4.224 24 C -0.243 4.243 25 C -0.409 4.409 26 S 0.419 5.581 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.151 0.849 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.062 0.938 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.481 16.122 15.731 25.752 hybrid contribution -0.165 -1.229 -1.448 1.906 sum -12.646 14.893 14.283 24.202 Atomic orbital electron populations 1.22851 0.79737 1.03453 1.00660 1.87887 1.21190 1.27930 1.95594 1.23111 0.92276 0.85640 1.02724 1.22464 0.94449 1.01498 0.84169 1.45643 1.64203 1.05711 1.10271 1.22287 0.76899 0.82306 0.90585 1.21933 1.03654 0.99527 0.95353 1.91039 1.42121 1.73073 1.34439 1.24354 1.02751 0.94989 0.90886 1.66314 1.17833 1.38844 1.00080 1.21131 0.98891 0.88296 0.98416 1.19993 0.84620 0.99336 0.89074 1.43635 1.01116 1.04846 1.79358 1.18074 1.08061 0.82617 1.28607 0.96082 1.25980 1.00029 0.94561 0.99839 1.70048 1.45504 1.00929 1.41721 0.85880 0.78543 0.77537 0.81013 1.22078 1.16052 1.23518 1.21511 0.86516 0.92629 0.99313 1.23056 0.98104 1.00187 1.01010 1.23243 1.08152 1.00017 0.92841 1.26919 1.14791 1.01174 0.98050 1.82614 1.67697 0.99206 1.08628 0.91502 0.94973 0.89297 0.87169 0.93863 0.84746 0.86276 0.85746 0.88988 0.88247 0.87979 0.94763 0.93554 0.84864 0.92105 0.86309 0.86338 0.93810 0.77702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.32 7.76 -148.98 -1.16 -8.47 16 3 C 0.04 0.56 6.28 71.98 0.45 1.01 16 4 C 0.09 1.60 5.41 86.38 0.47 2.07 16 5 N -0.53 -17.03 2.66 -643.72 -1.71 -18.74 16 6 C 0.49 19.26 7.50 87.66 0.66 19.92 16 7 C -0.15 -3.70 8.89 71.24 0.63 -3.07 16 8 O -0.53 -30.22 15.77 -3.04 -0.05 -30.27 16 9 C 0.24 9.13 7.65 179.20 1.37 10.50 16 10 N -0.51 -25.52 8.69 -189.59 -1.65 -27.17 16 11 C 0.07 2.92 6.32 41.45 0.26 3.18 16 12 C 0.20 9.26 4.98 85.63 0.43 9.68 16 13 N -0.57 -28.98 2.37 -682.33 -1.62 -30.60 16 14 C -0.24 -15.33 8.77 84.03 0.74 -14.60 16 15 H 0.02 1.53 7.17 -2.91 -0.02 1.51 16 16 C -0.01 -0.45 5.30 84.86 0.45 0.00 16 17 N -0.94 -66.93 13.97 21.65 0.30 -66.62 16 18 Si 0.94 51.67 25.11 68.60 1.72 53.40 16 19 H -0.29 -16.26 6.66 99.48 0.66 -15.59 16 20 H -0.24 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.31 -16.81 7.11 99.48 0.71 -16.10 16 22 C 0.11 4.28 6.57 44.99 0.30 4.58 16 23 C -0.19 -7.29 9.78 30.59 0.30 -6.99 16 24 C -0.20 -7.57 10.35 30.59 0.32 -7.25 16 25 C -0.27 -8.66 11.09 66.73 0.74 -7.91 16 26 S 0.17 4.46 21.66 -56.49 -1.22 3.23 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.13 1.55 6.29 -2.39 -0.02 1.54 16 33 H 0.12 1.50 6.96 -2.39 -0.02 1.48 16 34 H 0.12 2.16 4.18 -2.39 -0.01 2.15 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.10 3.76 8.03 -2.39 -0.02 3.74 16 38 H 0.03 1.87 3.43 -2.38 -0.01 1.86 16 39 H 0.26 17.47 8.31 -92.71 -0.77 16.70 16 40 H 0.13 4.18 8.14 -2.38 -0.02 4.16 16 41 H 0.06 2.94 6.62 -2.38 -0.02 2.92 16 42 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.21 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -101.02 377.36 3.94 -97.08 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.96 Total: 15.40 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 8.36 Total: 12.76 kcal Atomic # 7 Polarization: -138.45 SS G_CDS: -4.67 Total: -143.13 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.20 Total: -38.74 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.72 Total: 53.40 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.22 Total: 3.23 kcal Total: -101.02 3.94 -97.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072960826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.952 kcal (2) G-P(sol) polarization free energy of solvation -101.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds