Wall clock time and date at job start Tue Mar 31 2020 22:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.16098 * 2 1 4 4 C 1.31198 * 122.96879 * 179.73335 * 3 2 1 5 5 C 1.39826 * 119.66676 * 359.10860 * 4 3 2 6 6 C 1.36844 * 118.74773 * 1.27146 * 5 4 3 7 7 C 1.34686 * 119.15783 * 180.02562 * 2 1 3 8 8 O 1.22061 * 120.52549 * 0.97746 * 7 2 1 9 9 C 1.50500 * 122.52513 * 181.38382 * 5 4 3 10 10 N 1.46784 * 109.46739 * 348.13318 * 9 5 4 11 11 C 1.34777 * 121.27054 * 224.50282 * 10 9 5 12 12 O 1.21585 * 120.00031 * 183.85756 * 11 10 9 13 13 C 1.47646 * 119.99539 * 3.86477 * 11 10 9 14 14 C 1.40015 * 119.89121 * 142.19798 * 13 11 10 15 15 C 1.36316 * 120.10050 * 179.97438 * 14 13 11 16 16 C 1.40890 * 119.89709 * 0.02562 * 15 14 13 17 17 C 1.41111 * 120.10419 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99681 * 152.61007 * 17 16 15 19 19 C 1.40227 * 119.99980 * 332.60724 * 17 16 15 20 20 N 1.30646 * 119.99886 * 162.45614 * 19 17 16 21 21 Si 1.86798 * 120.00131 * 342.45923 * 19 17 16 22 22 H 1.48505 * 109.46899 * 92.41844 * 21 19 17 23 23 H 1.48496 * 109.46999 * 212.42001 * 21 19 17 24 24 H 1.48497 * 109.47312 * 332.42260 * 21 19 17 25 25 C 1.40886 * 119.78830 * 359.97438 * 16 15 14 26 26 C 1.36316 * 119.89444 * 0.02562 * 25 16 15 27 27 C 1.47175 * 117.46489 * 44.77108 * 10 9 5 28 28 C 1.50631 * 118.00136 * 178.48999 * 4 3 2 29 29 H 1.08997 * 109.47182 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47136 * 119.99728 * 1 2 3 31 31 H 1.08997 * 109.46796 * 239.99615 * 1 2 3 32 32 H 1.08000 * 121.01594 * 179.43879 * 6 5 4 33 33 H 1.09005 * 109.47575 * 228.13115 * 9 5 4 34 34 H 1.09007 * 109.47717 * 108.13528 * 9 5 4 35 35 H 1.07999 * 119.94997 * 0.02562 * 14 13 11 36 36 H 1.08008 * 120.05331 * 180.29322 * 15 14 13 37 37 H 0.96995 * 120.00121 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.04862 * 180.02562 * 25 16 15 39 39 H 1.07998 * 119.94284 * 180.02562 * 26 25 16 40 40 H 1.09003 * 109.71837 * 54.78851 * 27 10 9 41 41 H 1.09005 * 109.71728 * 175.42610 * 27 10 9 42 42 H 1.09001 * 109.21963 * 280.35178 * 28 4 3 43 43 H 1.08998 * 109.22397 * 39.74214 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3982 1.2056 0.0051 5 6 4.1693 0.0395 0.0298 6 6 3.5318 -1.1714 0.0215 7 6 2.1212 -1.1762 -0.0005 8 8 1.5052 -2.2298 -0.0189 9 6 5.6736 0.0648 0.0677 10 7 6.1471 1.4259 -0.2111 11 6 7.1729 1.6504 -1.0561 12 8 7.5921 2.7804 -1.2166 13 6 7.7874 0.5242 -1.7868 14 6 8.2086 0.6982 -3.1107 15 6 8.7769 -0.3386 -3.7892 16 6 8.9397 -1.5868 -3.1563 17 6 9.5270 -2.6632 -3.8547 18 1 10.0507 -3.4368 -3.3130 19 6 9.4305 -2.7283 -5.2522 20 7 10.2371 -3.5032 -5.9273 21 14 8.1486 -1.7071 -6.1485 22 1 8.7437 -0.4070 -6.5499 23 1 7.6918 -2.4370 -7.3583 24 1 6.9914 -1.4653 -5.2498 25 6 8.5143 -1.7569 -1.8241 26 6 7.9470 -0.7143 -1.1536 27 6 5.4631 2.5358 0.4718 28 6 4.0157 2.5791 -0.0305 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 4.0915 -2.0950 0.0307 33 1 6.0676 -0.6183 -0.6849 34 1 6.0176 -0.2446 1.0547 35 1 8.0837 1.6555 -3.5948 36 1 9.1058 -0.2022 -4.8088 37 1 10.1706 -3.5479 -6.8939 38 1 8.6374 -2.7118 -1.3347 39 1 7.6210 -0.8437 -0.1322 40 1 5.4760 2.3687 1.5488 41 1 5.9641 3.4755 0.2389 42 1 3.9999 2.9531 -1.0542 43 1 3.4371 3.2493 0.6052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270301725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:38 Heat of formation + Delta-G solvation = 31.502573 kcal Electronic energy + Delta-G solvation = -28917.834860 eV Core-core repulsion = 24929.600048 eV Total energy + Delta-G solvation = -3988.234812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27628 -39.98657 -38.17425 -37.53081 -36.78405 -34.20959 -34.01913 -33.23903 -31.16763 -30.21832 -29.91932 -28.78650 -26.51690 -25.74813 -24.78342 -23.28849 -22.48153 -21.62827 -20.89246 -19.51710 -18.33463 -17.83113 -17.43350 -16.99044 -16.80066 -16.19116 -15.91355 -15.49431 -15.15011 -14.63309 -14.41160 -14.18371 -13.85060 -13.80730 -13.55558 -13.46530 -13.20789 -12.99563 -12.89643 -12.70610 -12.58698 -12.47613 -12.35583 -12.11895 -11.88652 -11.52136 -11.18604 -11.02785 -10.89195 -10.51395 -10.33445 -10.10063 -9.95756 -9.79189 -9.42285 -9.14869 -8.70181 -8.47777 -8.00113 -7.83457 -7.27233 -4.78797 0.31480 1.39953 1.99049 2.06176 2.55060 2.93596 3.04338 3.06975 3.13855 3.19114 3.42545 3.76746 3.84830 4.21802 4.29822 4.32073 4.52691 4.83362 4.92373 4.97185 5.03026 5.15289 5.22818 5.25124 5.28866 5.38431 5.42264 5.46661 5.58774 5.70413 5.71797 5.82839 5.91155 5.94690 5.98608 6.32545 6.50204 6.58675 6.62869 6.86465 7.18895 7.25953 7.39546 7.46667 7.61134 7.72460 7.82649 7.97385 8.04636 8.37408 8.48863 8.65166 9.72238 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.003531 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.374347 B = 7927.539627 C = 9173.831500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.345 5.345 3 N -0.231 5.231 4 C 0.080 3.920 5 C -0.036 4.036 6 C -0.193 4.193 7 C 0.477 3.523 8 O -0.537 6.537 9 C 0.129 3.871 10 N -0.622 5.622 11 C 0.585 3.415 12 O -0.556 6.556 13 C -0.287 4.287 14 C -0.010 4.010 15 C -0.254 4.254 16 C 0.105 3.895 17 C -0.420 4.420 18 H 0.097 0.903 19 C 0.081 3.919 20 N -0.783 5.783 21 Si 0.920 3.080 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.242 1.242 25 C -0.216 4.216 26 C -0.058 4.058 27 C 0.114 3.886 28 C -0.066 4.066 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.292 0.708 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 7.635 10.438 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.165 5.165 3 N -0.056 5.056 4 C -0.090 4.090 5 C -0.042 4.042 6 C -0.223 4.223 7 C 0.277 3.723 8 O -0.416 6.416 9 C 0.006 3.994 10 N -0.356 5.356 11 C 0.380 3.620 12 O -0.435 6.435 13 C -0.292 4.292 14 C -0.029 4.029 15 C -0.273 4.273 16 C 0.101 3.899 17 C -0.447 4.447 18 H 0.115 0.885 19 C -0.142 4.142 20 N -0.405 5.405 21 Si 0.746 3.254 22 H -0.192 1.192 23 H -0.217 1.217 24 H -0.165 1.165 25 C -0.235 4.235 26 C -0.077 4.077 27 C -0.010 4.010 28 C -0.106 4.106 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.186 0.814 33 H 0.154 0.846 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.887 7.926 10.098 19.657 hybrid contribution 0.086 -0.437 -0.527 0.690 sum -14.800 7.490 9.571 19.151 Atomic orbital electron populations 1.22099 0.74219 1.04807 1.04315 1.46554 1.09470 1.02801 1.57703 1.70878 1.11787 1.12120 1.10769 1.21480 0.87255 0.96864 1.03393 1.21112 0.98534 0.92730 0.91873 1.22638 0.92976 0.99798 1.06910 1.17964 0.89752 0.84029 0.80561 1.90982 1.69530 1.29045 1.52066 1.21269 0.87434 0.86683 1.04014 1.47971 1.34757 1.06063 1.46803 1.18602 0.77633 0.89077 0.76702 1.90676 1.62892 1.24788 1.65175 1.18767 1.19152 0.94138 0.97115 1.20284 0.93024 0.97093 0.92531 1.20751 1.11721 0.94130 1.00725 1.17836 0.87829 0.91934 0.92326 1.19789 1.26664 1.06809 0.91390 0.88542 1.26395 0.95475 0.94238 0.98077 1.69591 1.30104 1.30685 1.10114 0.86204 0.82090 0.78812 0.78294 1.19156 1.21670 1.16542 1.20689 1.08021 0.98168 0.96638 1.20643 0.97310 0.92142 0.97591 1.21617 0.90323 0.92652 0.96366 1.20654 0.95665 0.90191 1.04103 0.88365 0.89679 0.89751 0.81440 0.84573 0.88995 0.88110 0.87680 0.89698 0.87587 0.87709 0.90932 0.87530 0.89065 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.23 59.85 0.61 1.32 16 2 N -0.35 -4.13 3.61 -70.17 -0.25 -4.38 16 3 N -0.23 -2.67 10.69 33.70 0.36 -2.31 16 4 C 0.08 0.91 6.73 -82.30 -0.55 0.36 16 5 C -0.04 -0.43 5.81 -104.63 -0.61 -1.03 16 6 C -0.19 -2.41 9.75 -39.01 -0.38 -2.79 16 7 C 0.48 6.71 7.48 -15.22 -0.11 6.60 16 8 O -0.54 -8.99 17.11 4.86 0.08 -8.90 16 9 C 0.13 1.54 4.61 -5.14 -0.02 1.52 16 10 N -0.62 -8.59 2.93 -175.41 -0.51 -9.11 16 11 C 0.58 10.61 7.39 -12.42 -0.09 10.52 16 12 O -0.56 -11.54 16.35 5.29 0.09 -11.45 16 13 C -0.29 -5.68 5.40 -104.73 -0.57 -6.25 16 14 C -0.01 -0.22 9.55 -39.61 -0.38 -0.60 16 15 C -0.25 -5.79 7.11 -39.27 -0.28 -6.07 16 16 C 0.10 2.43 5.18 -106.80 -0.55 1.87 16 17 C -0.42 -10.37 9.58 -37.75 -0.36 -10.74 16 18 H 0.10 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.08 1.96 5.43 -17.31 -0.09 1.87 16 20 N -0.78 -19.22 13.92 55.56 0.77 -18.45 16 21 Si 0.92 19.54 24.44 -169.99 -4.16 15.39 16 22 H -0.27 -5.52 6.55 56.52 0.37 -5.15 16 23 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.24 -5.28 6.89 56.52 0.39 -4.89 16 25 C -0.22 -4.42 9.73 -39.27 -0.38 -4.80 16 26 C -0.06 -1.06 7.31 -39.61 -0.29 -1.35 16 27 C 0.11 1.21 6.44 -3.53 -0.02 1.19 16 28 C -0.07 -0.63 6.13 -27.77 -0.17 -0.80 16 29 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.14 1.85 4.43 -51.93 -0.23 1.62 16 34 H 0.09 0.88 7.95 -51.93 -0.41 0.46 16 35 H 0.10 2.07 8.03 -52.49 -0.42 1.65 16 36 H 0.11 2.39 4.27 -52.48 -0.22 2.17 16 37 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 38 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.11 1.53 5.71 -52.49 -0.30 1.23 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.22 7.06 -51.93 -0.37 0.85 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -30.41 352.12 -7.50 -37.91 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.93 Total: 5.18 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.26 Total: -9.19 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.37 Total: -34.24 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.16 Total: 15.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.41 -7.50 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270301725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.413 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds