Wall clock time and date at job start Tue Mar 31 2020 22:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99608 * 2 1 4 4 N 1.34778 * 120.00050 * 179.72240 * 2 1 3 5 5 C 1.39405 * 119.99683 * 176.28554 * 4 2 1 6 6 C 1.39040 * 119.69404 * 185.67792 * 5 4 2 7 7 C 1.38353 * 119.10241 * 180.02562 * 6 5 4 8 8 C 1.38846 * 118.49236 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.34320 * 180.02562 * 8 7 6 10 10 N 1.46490 * 109.47402 * 89.99969 * 9 8 7 11 11 C 1.34779 * 120.00359 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.47633 * 120.00514 * 180.02562 * 11 10 9 14 14 C 1.40015 * 119.89549 * 359.72237 * 13 11 10 15 15 C 1.36321 * 120.10921 * 179.75732 * 14 13 11 16 16 C 1.40887 * 119.88765 * 0.52035 * 15 14 13 17 17 C 1.41109 * 120.10131 * 179.71981 * 16 15 14 18 18 H 1.07992 * 120.00493 * 160.41764 * 17 16 15 19 19 C 1.40230 * 119.99803 * 340.40935 * 17 16 15 20 20 N 1.30645 * 120.00224 * 324.80741 * 19 17 16 21 21 Si 1.86804 * 119.99719 * 144.79940 * 19 17 16 22 22 H 1.48497 * 109.46943 * 94.99611 * 21 19 17 23 23 H 1.48504 * 109.46918 * 214.99470 * 21 19 17 24 24 H 1.48501 * 109.47209 * 334.99389 * 21 19 17 25 25 C 1.40888 * 119.79651 * 359.73113 * 16 15 14 26 26 C 1.36314 * 119.88996 * 0.02562 * 25 16 15 27 27 C 1.38067 * 119.31366 * 0.02562 * 8 7 6 28 28 N 1.31938 * 120.84612 * 359.72053 * 27 8 7 29 29 H 1.08995 * 109.47267 * 240.27433 * 1 2 3 30 30 H 1.08992 * 109.46956 * 0.27480 * 1 2 3 31 31 H 1.09004 * 109.46803 * 120.27444 * 1 2 3 32 32 H 0.97001 * 119.99677 * 356.29849 * 4 2 1 33 33 H 1.07998 * 120.44994 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.75555 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47334 * 210.00499 * 9 8 7 36 36 H 1.09008 * 109.47118 * 329.99730 * 9 8 7 37 37 H 0.96998 * 120.00073 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.94189 * 0.02562 * 14 13 11 39 39 H 1.08002 * 120.05410 * 180.23498 * 15 14 13 40 40 H 0.97006 * 120.00280 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.05084 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.94833 * 179.97438 * 26 25 16 43 43 H 1.07994 * 119.58062 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0057 5 6 3.5728 -1.1688 -0.0726 6 6 4.2550 -2.3750 -0.1857 7 6 5.6363 -2.3623 -0.2619 8 6 6.2907 -1.1384 -0.2227 9 6 7.7942 -1.0759 -0.3032 10 7 8.2042 -0.9704 -1.7056 11 6 9.5125 -0.9008 -2.0218 12 8 10.3525 -0.9252 -1.1430 13 6 9.9257 -0.7938 -3.4351 14 6 8.9569 -0.7707 -4.4456 15 6 9.3333 -0.6670 -5.7517 16 6 10.7004 -0.5942 -6.0847 17 6 11.0953 -0.4928 -7.4356 18 1 12.0799 -0.1254 -7.6842 19 6 10.2093 -0.8692 -8.4552 20 7 9.3933 -1.8732 -8.2739 21 14 10.1957 0.0652 -10.0727 22 1 11.0637 -0.6328 -11.0548 23 1 8.8074 0.1284 -10.5961 24 1 10.7050 1.4427 -9.8530 25 6 11.6719 -0.6231 -5.0647 26 6 11.2855 -0.7220 -3.7612 27 6 5.5495 0.0210 -0.1092 28 7 4.2325 -0.0217 -0.0435 29 1 -0.3633 -0.5095 0.8924 30 1 -0.3633 1.0276 -0.0049 31 1 -0.3633 -0.5181 -0.8876 32 1 1.6974 -2.0061 0.0640 33 1 3.7139 -3.3093 -0.2129 34 1 6.1931 -3.2836 -0.3507 35 1 8.1517 -0.2052 0.2464 36 1 8.2193 -1.9802 0.1326 37 1 7.5341 -0.9505 -2.4066 38 1 7.9093 -0.8307 -4.1896 39 1 8.5851 -0.6454 -6.5303 40 1 8.7806 -2.1338 -8.9794 41 1 12.7209 -0.5680 -5.3153 42 1 12.0294 -0.7446 -2.9786 43 1 6.0540 0.9753 -0.0779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345294385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:23 Heat of formation + Delta-G solvation = -13.061106 kcal Electronic energy + Delta-G solvation = -27003.538169 eV Core-core repulsion = 23013.370931 eV Total energy + Delta-G solvation = -3990.167238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06623 -39.48063 -38.84638 -37.10811 -35.58153 -34.26461 -33.95838 -32.52475 -31.40733 -30.36245 -29.55848 -29.37589 -26.54669 -25.18307 -24.25501 -22.48289 -21.64034 -20.92428 -20.84263 -19.62419 -18.50895 -17.55560 -17.40544 -17.13179 -16.03934 -15.84105 -15.62985 -15.40805 -15.03303 -14.81620 -14.26702 -14.15092 -14.05271 -13.94650 -13.63109 -13.30137 -13.17728 -13.00352 -12.75040 -12.62289 -12.43672 -12.21371 -11.97807 -11.83883 -11.34375 -11.26125 -11.01496 -11.00455 -10.66680 -10.49046 -10.18989 -10.03447 -9.54312 -9.30065 -9.20669 -9.04087 -8.60180 -8.43630 -7.74691 -7.65031 -7.22441 -4.57846 0.78850 1.10682 2.26378 2.33965 2.51717 2.84132 2.92091 3.01194 3.04714 3.56583 3.68833 3.82740 4.03838 4.10580 4.45633 4.47552 4.58463 4.70948 4.77659 4.82586 4.89914 4.90272 5.27217 5.38992 5.55219 5.62922 5.69117 5.74991 5.94062 6.04195 6.14570 6.17620 6.32127 6.50217 6.72354 6.78778 6.82189 6.91670 7.02914 7.12473 7.41385 7.66457 7.68650 7.75383 7.85555 8.00294 8.03260 8.25773 8.35146 8.59042 8.75209 9.09904 9.69885 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002270 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.025643 B =12329.559957 C =14055.057424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.497 3.503 3 O -0.474 6.474 4 N -0.664 5.664 5 C 0.357 3.643 6 C -0.208 4.208 7 C -0.029 4.029 8 C -0.182 4.182 9 C 0.173 3.827 10 N -0.740 5.740 11 C 0.573 3.427 12 O -0.577 6.577 13 C -0.296 4.296 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.129 3.871 17 C -0.445 4.445 18 H 0.089 0.911 19 C 0.088 3.912 20 N -0.744 5.744 21 Si 0.901 3.099 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.245 4.245 26 C -0.015 4.015 27 C 0.151 3.849 28 N -0.478 5.478 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.417 0.583 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.290 0.710 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 -3.281 10.974 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.284 3.716 3 O -0.343 6.343 4 N -0.312 5.312 5 C 0.126 3.874 6 C -0.231 4.231 7 C -0.056 4.056 8 C -0.186 4.186 9 C 0.049 3.951 10 N -0.394 5.394 11 C 0.368 3.632 12 O -0.459 6.459 13 C -0.301 4.301 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.126 3.874 17 C -0.471 4.471 18 H 0.107 0.893 19 C -0.139 4.139 20 N -0.364 5.364 21 Si 0.723 3.277 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.264 4.264 26 C -0.034 4.034 27 C -0.007 4.007 28 N -0.191 5.191 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.253 0.747 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.232 0.768 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.637 -1.865 11.577 21.179 hybrid contribution -0.387 -1.104 -1.199 1.675 sum -18.024 -2.969 10.378 21.009 Atomic orbital electron populations 1.21945 0.90740 1.06063 1.04414 1.21118 0.90704 0.83388 0.76439 1.90865 1.70038 1.30353 1.43029 1.43709 1.03906 1.10790 1.72804 1.18539 0.84602 0.90044 0.94240 1.21447 0.95212 0.97395 1.09066 1.21358 0.93278 0.98247 0.92692 1.20943 0.97168 0.94346 1.06142 1.19880 0.87868 1.02731 0.84654 1.45992 1.08227 1.78158 1.06990 1.18583 0.80804 0.74176 0.89604 1.90633 1.51338 1.53261 1.50693 1.18781 0.94359 1.26941 0.90004 1.20395 0.95870 0.97490 0.93436 1.20699 0.96010 1.10385 0.94455 1.17690 0.91512 0.85499 0.92744 1.19813 1.01044 1.35768 0.90464 0.89293 1.26151 0.93362 0.92823 1.01524 1.69854 1.14558 1.17047 1.34964 0.86414 0.79004 0.81884 0.80389 1.19077 1.19557 1.17679 1.20613 0.97815 1.15511 0.92470 1.20344 0.93858 0.93649 0.95589 1.22678 0.87994 0.98283 0.91776 1.67706 1.09414 1.26686 1.15342 0.89211 0.88511 0.89122 0.74655 0.84565 0.84097 0.90915 0.91066 0.76763 0.89545 0.87596 0.89914 0.88454 0.88150 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.32 36.01 0.37 -0.38 16 2 C 0.50 4.76 7.90 -10.98 -0.09 4.67 16 3 O -0.47 -7.12 15.35 5.56 0.09 -7.03 16 4 N -0.66 -5.27 5.39 -11.42 -0.06 -5.33 16 5 C 0.36 3.96 7.42 -154.71 -1.15 2.81 16 6 C -0.21 -1.85 9.94 -39.24 -0.39 -2.24 16 7 C -0.03 -0.29 9.85 -39.31 -0.39 -0.68 16 8 C -0.18 -2.14 5.27 -104.46 -0.55 -2.69 16 9 C 0.17 2.37 5.82 -5.20 -0.03 2.34 16 10 N -0.74 -12.32 5.50 -62.50 -0.34 -12.66 16 11 C 0.57 12.16 7.76 -12.42 -0.10 12.06 16 12 O -0.58 -13.67 16.32 5.29 0.09 -13.58 16 13 C -0.30 -6.81 5.89 -104.73 -0.62 -7.43 16 14 C -0.05 -1.18 9.47 -39.61 -0.38 -1.56 16 15 C -0.20 -4.81 8.77 -39.27 -0.34 -5.16 16 16 C 0.13 3.28 5.60 -106.80 -0.60 2.68 16 17 C -0.45 -11.01 8.94 -37.75 -0.34 -11.35 16 18 H 0.09 2.11 8.04 -52.49 -0.42 1.68 16 19 C 0.09 2.01 4.72 -17.31 -0.08 1.93 16 20 N -0.74 -17.53 11.81 55.56 0.66 -16.87 16 21 Si 0.90 16.87 29.67 -169.99 -5.04 11.83 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 25 C -0.24 -5.96 9.73 -39.27 -0.38 -6.34 16 26 C -0.02 -0.36 9.52 -39.61 -0.38 -0.74 16 27 C 0.15 1.93 10.85 -17.57 -0.19 1.74 16 28 N -0.48 -6.71 7.89 -12.37 -0.10 -6.81 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.42 1.43 8.70 -40.82 -0.36 1.07 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.07 0.97 8.10 -51.92 -0.42 0.55 16 37 H 0.40 6.19 6.46 -40.82 -0.26 5.92 16 38 H 0.09 1.66 6.37 -52.48 -0.33 1.33 16 39 H 0.11 2.61 6.45 -52.49 -0.34 2.27 16 40 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 41 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 42 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 43 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.82 375.79 -9.72 -43.55 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.05 Total: 11.58 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -5.62 Total: -10.33 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.15 Total: -41.67 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.04 Total: 11.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.82 -9.72 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345294385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.487 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds