Wall clock time and date at job start Tue Mar 31 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99608 * 2 1 4 4 N 1.34778 * 120.00050 * 179.72240 * 2 1 3 5 5 C 1.39405 * 119.99683 * 176.28554 * 4 2 1 6 6 C 1.39040 * 119.69404 * 185.67792 * 5 4 2 7 7 C 1.38353 * 119.10241 * 180.02562 * 6 5 4 8 8 C 1.38846 * 118.49236 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.34320 * 180.02562 * 8 7 6 10 10 N 1.46490 * 109.47402 * 89.99969 * 9 8 7 11 11 C 1.34779 * 120.00359 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.47633 * 120.00514 * 180.02562 * 11 10 9 14 14 C 1.40015 * 119.89549 * 359.72237 * 13 11 10 15 15 C 1.36321 * 120.10921 * 179.75732 * 14 13 11 16 16 C 1.40887 * 119.88765 * 0.52035 * 15 14 13 17 17 C 1.41109 * 120.10131 * 179.71981 * 16 15 14 18 18 H 1.07992 * 120.00493 * 160.41764 * 17 16 15 19 19 C 1.40230 * 119.99803 * 340.40935 * 17 16 15 20 20 N 1.30645 * 120.00224 * 324.80741 * 19 17 16 21 21 Si 1.86804 * 119.99719 * 144.79940 * 19 17 16 22 22 H 1.48497 * 109.46943 * 94.99611 * 21 19 17 23 23 H 1.48504 * 109.46918 * 214.99470 * 21 19 17 24 24 H 1.48501 * 109.47209 * 334.99389 * 21 19 17 25 25 C 1.40888 * 119.79651 * 359.73113 * 16 15 14 26 26 C 1.36314 * 119.88996 * 0.02562 * 25 16 15 27 27 C 1.38067 * 119.31366 * 0.02562 * 8 7 6 28 28 N 1.31938 * 120.84612 * 359.72053 * 27 8 7 29 29 H 1.08995 * 109.47267 * 240.27433 * 1 2 3 30 30 H 1.08992 * 109.46956 * 0.27480 * 1 2 3 31 31 H 1.09004 * 109.46803 * 120.27444 * 1 2 3 32 32 H 0.97001 * 119.99677 * 356.29849 * 4 2 1 33 33 H 1.07998 * 120.44994 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.75555 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47334 * 210.00499 * 9 8 7 36 36 H 1.09008 * 109.47118 * 329.99730 * 9 8 7 37 37 H 0.96998 * 120.00073 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.94189 * 0.02562 * 14 13 11 39 39 H 1.08002 * 120.05410 * 180.23498 * 15 14 13 40 40 H 0.97006 * 120.00280 * 180.02562 * 20 19 17 41 41 H 1.07994 * 120.05084 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.94833 * 179.97438 * 26 25 16 43 43 H 1.07994 * 119.58062 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0057 5 6 3.5728 -1.1688 -0.0726 6 6 4.2550 -2.3750 -0.1857 7 6 5.6363 -2.3623 -0.2619 8 6 6.2907 -1.1384 -0.2227 9 6 7.7942 -1.0759 -0.3032 10 7 8.2042 -0.9704 -1.7056 11 6 9.5125 -0.9008 -2.0218 12 8 10.3525 -0.9252 -1.1430 13 6 9.9257 -0.7938 -3.4351 14 6 8.9569 -0.7707 -4.4456 15 6 9.3333 -0.6670 -5.7517 16 6 10.7004 -0.5942 -6.0847 17 6 11.0953 -0.4928 -7.4356 18 1 12.0799 -0.1254 -7.6842 19 6 10.2093 -0.8692 -8.4552 20 7 9.3933 -1.8732 -8.2739 21 14 10.1957 0.0652 -10.0727 22 1 11.0637 -0.6328 -11.0548 23 1 8.8074 0.1284 -10.5961 24 1 10.7050 1.4427 -9.8530 25 6 11.6719 -0.6231 -5.0647 26 6 11.2855 -0.7220 -3.7612 27 6 5.5495 0.0210 -0.1092 28 7 4.2325 -0.0217 -0.0435 29 1 -0.3633 -0.5095 0.8924 30 1 -0.3633 1.0276 -0.0049 31 1 -0.3633 -0.5181 -0.8876 32 1 1.6974 -2.0061 0.0640 33 1 3.7139 -3.3093 -0.2129 34 1 6.1931 -3.2836 -0.3507 35 1 8.1517 -0.2052 0.2464 36 1 8.2193 -1.9802 0.1326 37 1 7.5341 -0.9505 -2.4066 38 1 7.9093 -0.8307 -4.1896 39 1 8.5851 -0.6454 -6.5303 40 1 8.7806 -2.1338 -8.9794 41 1 12.7209 -0.5680 -5.3153 42 1 12.0294 -0.7446 -2.9786 43 1 6.0540 0.9753 -0.0779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345294385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:22 Heat of formation + Delta-G solvation = -34.833765 kcal Electronic energy + Delta-G solvation = -27004.482303 eV Core-core repulsion = 23013.370931 eV Total energy + Delta-G solvation = -3991.111371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88379 -40.76862 -40.05124 -38.86926 -36.61044 -35.74507 -35.43205 -33.49474 -32.49337 -31.74144 -31.31891 -30.28077 -28.03921 -26.52377 -25.08113 -23.81099 -23.02947 -22.66466 -21.60243 -21.27209 -19.38847 -19.24498 -18.68226 -18.15475 -17.28842 -16.97428 -16.81077 -16.54213 -16.16496 -15.80459 -15.73651 -15.58614 -15.28346 -15.10863 -14.81882 -14.68016 -14.38701 -14.03405 -13.99153 -13.77009 -13.69144 -13.38575 -13.16208 -13.05114 -12.91756 -12.77386 -12.66834 -12.32408 -11.91098 -11.83678 -11.36590 -11.30750 -10.97653 -10.92050 -10.68524 -10.18014 -10.03407 -9.58381 -9.51861 -9.30753 -8.96808 -6.44667 -0.07057 0.29333 0.48528 1.15915 1.33401 1.41295 1.54598 1.62318 1.90418 2.08433 2.16133 2.44344 2.70497 2.94277 3.34837 3.64172 3.67575 3.85896 3.92686 3.98849 4.09518 4.29425 4.31239 4.44813 4.47076 4.55600 4.66740 4.74263 4.76711 4.87922 4.90756 4.99978 5.10535 5.13393 5.18028 5.28941 5.29770 5.52357 5.57805 5.73193 5.82826 5.91314 5.99858 6.19968 6.21805 6.49824 6.69903 6.73257 6.89217 6.92099 7.32245 7.45688 8.00192 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002270 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.025643 B =12329.559957 C =14055.057424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.490 3.510 3 O -0.540 6.540 4 N -0.650 5.650 5 C 0.341 3.659 6 C -0.190 4.190 7 C -0.030 4.030 8 C -0.184 4.184 9 C 0.176 3.824 10 N -0.723 5.723 11 C 0.574 3.426 12 O -0.605 6.605 13 C -0.308 4.308 14 C -0.045 4.045 15 C -0.217 4.217 16 C 0.101 3.899 17 C -0.474 4.474 18 H 0.088 0.912 19 C 0.053 3.947 20 N -0.770 5.770 21 Si 0.976 3.024 22 H -0.256 1.256 23 H -0.260 1.260 24 H -0.258 1.258 25 C -0.261 4.261 26 C -0.026 4.026 27 C 0.136 3.864 28 N -0.517 5.517 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.439 0.561 33 H 0.179 0.821 34 H 0.163 0.837 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.302 0.698 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.559 -4.897 10.575 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.279 3.721 3 O -0.413 6.413 4 N -0.299 5.299 5 C 0.109 3.891 6 C -0.213 4.213 7 C -0.056 4.056 8 C -0.188 4.188 9 C 0.053 3.947 10 N -0.375 5.375 11 C 0.368 3.632 12 O -0.490 6.490 13 C -0.312 4.312 14 C -0.064 4.064 15 C -0.236 4.236 16 C 0.098 3.902 17 C -0.499 4.499 18 H 0.106 0.894 19 C -0.172 4.172 20 N -0.391 5.391 21 Si 0.795 3.205 22 H -0.180 1.180 23 H -0.183 1.183 24 H -0.182 1.182 25 C -0.280 4.280 26 C -0.045 4.045 27 C -0.022 4.022 28 N -0.232 5.232 29 H 0.138 0.862 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.280 0.720 33 H 0.196 0.804 34 H 0.180 0.820 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.240 0.760 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.367 -3.544 11.197 23.511 hybrid contribution 0.354 -0.687 -0.988 1.254 sum -20.014 -4.232 10.209 22.862 Atomic orbital electron populations 1.21960 0.86482 1.06453 1.07023 1.22133 0.92689 0.82707 0.74565 1.90843 1.71652 1.32633 1.46167 1.43715 1.02869 1.11728 1.71597 1.18997 0.85948 0.90142 0.94001 1.21820 0.94803 0.98134 1.06515 1.21660 0.94035 0.98131 0.91770 1.20694 0.95628 0.95026 1.07449 1.19950 0.89407 1.02806 0.82546 1.45851 1.06709 1.76169 1.08728 1.18348 0.82050 0.74249 0.88532 1.90615 1.52526 1.54773 1.51100 1.19069 0.94250 1.26452 0.91413 1.20622 0.97372 0.95867 0.92493 1.20743 0.95619 1.12012 0.95231 1.18031 0.92294 0.86331 0.93535 1.20079 1.01942 1.36826 0.91083 0.89361 1.26954 0.92452 0.93089 1.04663 1.69832 1.14846 1.17756 1.36666 0.85287 0.79551 0.79846 0.75801 1.17976 1.18349 1.18178 1.20752 0.98146 1.16337 0.92758 1.20497 0.94709 0.93827 0.95462 1.22644 0.88111 0.98638 0.92807 1.67661 1.09919 1.28847 1.16767 0.86201 0.89329 0.86541 0.71959 0.80352 0.81972 0.91360 0.90465 0.75967 0.86448 0.88099 0.88598 0.87930 0.87939 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 10.32 71.24 0.74 -0.24 16 2 C 0.49 8.78 7.90 87.66 0.69 9.47 16 3 O -0.54 -16.57 15.35 -3.03 -0.05 -16.62 16 4 N -0.65 -8.79 5.39 -308.44 -1.66 -10.45 16 5 C 0.34 6.97 7.42 132.92 0.99 7.96 16 6 C -0.19 -2.74 9.94 22.49 0.22 -2.52 16 7 C -0.03 -0.51 9.85 22.44 0.22 -0.29 16 8 C -0.18 -4.13 5.27 -19.76 -0.10 -4.23 16 9 C 0.18 4.69 5.82 85.63 0.50 5.18 16 10 N -0.72 -23.40 5.50 -469.91 -2.58 -25.99 16 11 C 0.57 24.25 7.76 86.72 0.67 24.92 16 12 O -0.61 -28.80 16.32 -4.00 -0.07 -28.86 16 13 C -0.31 -14.22 5.89 -19.93 -0.12 -14.34 16 14 C -0.04 -1.99 9.47 22.25 0.21 -1.78 16 15 C -0.22 -10.78 8.77 22.47 0.20 -10.58 16 16 C 0.10 5.29 5.60 -21.28 -0.12 5.17 16 17 C -0.47 -23.89 8.94 23.46 0.21 -23.68 16 18 H 0.09 4.29 8.04 -2.91 -0.02 4.27 16 19 C 0.05 2.41 4.72 85.35 0.40 2.81 16 20 N -0.77 -36.11 11.81 21.87 0.26 -35.85 16 21 Si 0.98 34.00 29.67 68.60 2.04 36.04 16 22 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 23 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 25 C -0.26 -13.10 9.73 22.47 0.22 -12.88 16 26 C -0.03 -1.26 9.52 22.25 0.21 -1.04 16 27 C 0.14 3.51 10.85 84.64 0.92 4.43 16 28 N -0.52 -14.56 7.89 -193.05 -1.52 -16.09 16 29 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 31 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.44 1.37 8.70 -92.71 -0.81 0.57 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.08 2.00 8.10 -2.38 -0.02 1.98 16 37 H 0.40 12.02 6.46 -92.71 -0.60 11.42 16 38 H 0.12 4.36 6.37 -2.91 -0.02 4.34 16 39 H 0.10 5.02 6.45 -2.91 -0.02 5.00 16 40 H 0.30 12.37 8.29 -92.70 -0.77 11.61 16 41 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.10 4.85 7.63 -2.91 -0.02 4.82 16 43 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -77.02 375.79 2.15 -74.88 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.33 Total: 34.58 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.06 Total: -11.64 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -5.51 Total: -88.37 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.11 Total: -45.48 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.04 Total: 36.04 kcal Total: -77.02 2.15 -74.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345294385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.043 kcal (2) G-P(sol) polarization free energy of solvation -77.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds