Wall clock time and date at job start Tue Mar 31 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46494 * 120.00132 * 2 1 4 4 C 1.50700 * 109.47136 * 275.00054 * 3 2 1 5 5 H 1.07996 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37888 * 120.00037 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99725 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00137 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47362 * 119.99833 * 8 6 4 11 11 H 1.48504 * 109.47305 * 240.00311 * 8 6 4 12 12 S 1.65601 * 119.99792 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40082 * 156.45856 * 12 2 1 14 14 O 1.42095 * 106.40407 * 23.53797 * 12 2 1 15 15 N 1.65601 * 107.21817 * 269.99606 * 12 2 1 16 16 C 1.46500 * 119.99712 * 64.99916 * 15 12 2 17 17 C 1.53004 * 109.47128 * 164.63088 * 16 15 12 18 18 C 1.50698 * 112.85092 * 301.73569 * 17 16 15 19 19 C 1.38227 * 119.61688 * 303.01737 * 18 17 16 20 20 C 1.38631 * 119.16037 * 180.02562 * 19 18 17 21 21 C 1.38667 * 118.41881 * 359.97438 * 20 19 18 22 22 C 1.38178 * 119.16718 * 0.28162 * 21 20 19 23 23 N 1.31853 * 119.61709 * 123.03292 * 18 17 16 24 24 C 1.53779 * 113.68738 * 73.00174 * 17 16 15 25 25 C 1.53779 * 87.08290 * 89.12780 * 24 17 16 26 26 C 1.53778 * 113.61250 * 170.53657 * 17 16 15 27 27 H 1.08999 * 109.47256 * 269.99544 * 1 2 3 28 28 H 1.09000 * 109.47129 * 30.00495 * 1 2 3 29 29 H 1.09004 * 109.47245 * 149.99832 * 1 2 3 30 30 H 1.09003 * 109.47165 * 35.00085 * 3 2 1 31 31 H 1.09004 * 109.47350 * 155.00475 * 3 2 1 32 32 H 0.96991 * 119.99655 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00315 * 245.00696 * 15 12 2 34 34 H 1.09001 * 109.47094 * 44.63195 * 16 15 12 35 35 H 1.09002 * 109.47213 * 284.63126 * 16 15 12 36 36 H 1.07997 * 120.41829 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.78773 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.41405 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.62076 * 179.69919 * 22 21 20 40 40 H 1.09005 * 113.61438 * 203.67638 * 24 17 16 41 41 H 1.08997 * 113.61995 * 334.58156 * 24 17 16 42 42 H 1.08995 * 113.61371 * 270.88216 * 25 24 17 43 43 H 1.09003 * 113.61905 * 139.97387 * 25 24 17 44 44 H 1.08995 * 113.61806 * 25.34977 * 26 17 16 45 45 H 1.09006 * 113.61270 * 156.25749 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6664 7 7 3.5017 3.6479 -0.6704 8 14 3.1776 3.5672 -3.4207 9 1 2.5302 2.6073 -4.3506 10 1 2.5259 4.8956 -3.5471 11 1 4.6184 3.6884 -3.7592 12 16 2.2929 -1.4342 -0.0006 13 8 3.5758 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.3946 -2.1788 2.4392 17 6 1.8866 -2.8947 3.6988 18 6 2.6440 -4.1613 3.3940 19 6 2.0376 -5.1585 2.6534 20 6 2.7429 -6.3200 2.3789 21 6 4.0378 -6.4353 2.8614 22 6 4.5763 -5.3987 3.5994 23 7 3.8775 -4.3056 3.8370 24 6 2.6080 -1.9697 4.6932 25 6 1.2302 -1.6997 5.3206 26 6 0.7993 -3.0702 4.7720 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5895 31 1 3.1858 1.1176 0.4342 32 1 3.9651 4.4815 -0.8470 33 1 3.4388 -1.8968 1.9392 34 1 0.7047 -2.8271 1.8990 35 1 0.8833 -1.2583 2.7208 36 1 1.0268 -5.0347 2.2938 37 1 2.2944 -7.1160 1.8031 38 1 4.6167 -7.3260 2.6662 39 1 5.5824 -5.4828 3.9828 40 1 3.2952 -2.4939 5.3575 41 1 3.0552 -1.0916 4.2274 42 1 0.7007 -0.8618 4.8673 43 1 1.2481 -1.6513 6.4094 44 1 -0.2137 -3.0806 4.3697 45 1 0.9919 -3.8952 5.4579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352633604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:49 Heat of formation + Delta-G solvation = -18.274690 kcal Electronic energy + Delta-G solvation = -28347.455694 eV Core-core repulsion = 24492.506330 eV Total energy + Delta-G solvation = -3854.949365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92572 -38.81623 -36.57596 -35.47368 -35.13117 -34.29091 -32.57155 -32.41542 -31.49940 -27.76769 -27.31210 -25.85924 -25.05069 -24.47393 -23.37501 -22.27019 -22.10929 -19.10070 -18.68528 -17.48448 -17.18442 -16.65069 -16.38950 -16.28375 -16.11470 -15.47490 -15.18985 -14.74546 -14.57239 -14.16601 -14.00318 -13.73344 -13.33256 -13.27058 -13.13459 -12.87665 -12.39497 -12.34592 -12.19175 -12.14116 -11.75111 -11.59568 -11.43444 -11.35155 -11.13416 -11.06262 -10.75569 -10.68408 -10.57294 -10.49683 -10.46107 -10.01846 -9.97700 -9.73673 -9.50375 -9.25342 -9.04442 -8.43306 -8.05045 -6.04980 -4.08768 0.98197 1.16863 1.25999 3.32013 3.39665 3.44676 3.52038 3.65668 3.96603 4.16202 4.33826 4.46159 4.48023 4.64284 4.71751 4.72842 4.78316 4.96990 5.05250 5.07190 5.23456 5.30367 5.39259 5.45602 5.51473 5.56450 5.63284 5.68590 5.72583 5.80602 5.90714 5.96256 6.01536 6.05901 6.12204 6.16820 6.31271 6.35843 6.56985 6.57533 7.13598 7.29087 7.44498 7.63695 7.89301 7.92772 8.22245 8.93903 9.56375 11.03678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003412 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.757296 B = 8203.604307 C = 8702.004460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.783 3.217 13 O -0.964 6.964 14 O -0.999 6.999 15 N -1.131 6.131 16 C 0.150 3.850 17 C -0.047 4.047 18 C 0.153 3.847 19 C -0.162 4.162 20 C -0.075 4.075 21 C -0.181 4.181 22 C 0.098 3.902 23 N -0.477 5.477 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.118 4.118 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -17.195 13.629 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.983 6.983 15 N -0.890 5.890 16 C 0.023 3.977 17 C -0.050 4.050 18 C 0.015 3.985 19 C -0.181 4.181 20 C -0.101 4.101 21 C -0.201 4.201 22 C -0.058 4.058 23 N -0.185 5.185 24 C -0.153 4.153 25 C -0.181 4.181 26 C -0.156 4.156 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.641 -16.838 13.302 21.955 hybrid contribution 0.146 -0.151 -1.057 1.078 sum -4.495 -16.990 12.245 21.420 Atomic orbital electron populations 1.21369 0.80272 1.03508 1.00114 1.57592 1.14221 1.23310 1.88729 1.19048 0.91034 0.78724 0.97643 1.21542 1.36015 1.06262 0.92992 0.92154 1.24936 0.95127 0.96517 0.97473 1.69930 1.37403 1.15282 1.30837 0.86461 0.78005 0.78479 0.84622 1.19652 1.20957 1.20804 1.01889 0.73359 0.72954 0.72802 1.93643 1.40687 1.84836 1.75626 1.93508 1.67650 1.60206 1.76895 1.56178 1.14571 1.86122 1.32135 1.20952 0.88055 0.99113 0.89619 1.21008 0.97025 0.92162 0.94779 1.20831 0.90378 0.94548 0.92752 1.21949 1.01948 0.94481 0.99770 1.21590 0.94272 0.97409 0.96779 1.22121 0.96558 1.00943 1.00491 1.22742 0.99445 0.88710 0.94942 1.67432 1.06744 1.23677 1.20687 1.22852 0.96438 0.98884 0.97173 1.22893 0.97565 0.96995 1.00690 1.22924 0.97655 0.98485 0.96570 0.94353 0.90376 0.91620 0.94686 0.94441 0.92758 0.75288 0.90366 0.90747 0.84769 0.84902 0.84999 0.82835 0.88724 0.90688 0.89640 0.91228 0.90638 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.68 59.85 0.64 2.22 16 2 N -1.00 -20.57 3.23 -123.06 -0.40 -20.97 16 3 C 0.26 6.48 5.08 -5.20 -0.03 6.45 16 4 C -0.53 -15.00 9.38 -34.44 -0.32 -15.32 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.76 5.46 -17.81 -0.10 1.66 16 7 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 S 2.78 55.93 6.10 -107.50 -0.66 55.27 16 13 O -0.96 -23.75 17.11 -57.17 -0.98 -24.73 16 14 O -1.00 -20.69 16.21 -57.17 -0.93 -21.61 16 15 N -1.13 -17.52 5.74 -10.61 -0.06 -17.58 16 16 C 0.15 1.84 5.28 -4.04 -0.02 1.82 16 17 C -0.05 -0.51 0.68 -154.85 -0.10 -0.62 16 18 C 0.15 1.82 5.38 -82.59 -0.44 1.38 16 19 C -0.16 -1.79 9.38 -39.44 -0.37 -2.16 16 20 C -0.07 -0.73 10.18 -39.28 -0.40 -1.13 16 21 C -0.18 -1.68 10.11 -39.45 -0.40 -2.08 16 22 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 23 N -0.48 -5.86 9.01 -9.47 -0.09 -5.94 16 24 C -0.12 -1.24 6.85 -25.92 -0.18 -1.42 16 25 C -0.14 -1.26 7.73 -25.92 -0.20 -1.46 16 26 C -0.12 -1.00 7.21 -25.92 -0.19 -1.19 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 30 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.04 1.01 7.61 -51.93 -0.40 0.61 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.41 6.30 8.51 -34.48 -0.29 6.01 16 34 H 0.08 0.92 7.19 -51.93 -0.37 0.55 16 35 H 0.07 0.83 7.31 -51.93 -0.38 0.45 16 36 H 0.13 1.32 7.63 -52.49 -0.40 0.92 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.09 1.04 7.43 -51.93 -0.39 0.66 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.09 0.73 7.60 -51.93 -0.39 0.34 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -35.06 383.46 -10.66 -45.73 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.75 Total: 3.61 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.31 Total: -11.02 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: 0.19 Total: -70.05 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.90 Total: -46.35 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 55.93 SS G_CDS: -0.66 Total: 55.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.06 -10.66 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352633604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.454 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds