Wall clock time and date at job start Tue Mar 31 2020 23:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46494 * 120.00132 * 2 1 4 4 C 1.50700 * 109.47136 * 275.00054 * 3 2 1 5 5 H 1.07996 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37888 * 120.00037 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99725 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00137 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47362 * 119.99833 * 8 6 4 11 11 H 1.48504 * 109.47305 * 240.00311 * 8 6 4 12 12 S 1.65601 * 119.99792 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40082 * 156.45856 * 12 2 1 14 14 O 1.42095 * 106.40407 * 23.53797 * 12 2 1 15 15 N 1.65601 * 107.21817 * 269.99606 * 12 2 1 16 16 C 1.46500 * 119.99712 * 64.99916 * 15 12 2 17 17 C 1.53004 * 109.47128 * 164.63088 * 16 15 12 18 18 C 1.50698 * 112.85092 * 301.73569 * 17 16 15 19 19 C 1.38227 * 119.61688 * 303.01737 * 18 17 16 20 20 C 1.38631 * 119.16037 * 180.02562 * 19 18 17 21 21 C 1.38667 * 118.41881 * 359.97438 * 20 19 18 22 22 C 1.38178 * 119.16718 * 0.28162 * 21 20 19 23 23 N 1.31853 * 119.61709 * 123.03292 * 18 17 16 24 24 C 1.53779 * 113.68738 * 73.00174 * 17 16 15 25 25 C 1.53779 * 87.08290 * 89.12780 * 24 17 16 26 26 C 1.53778 * 113.61250 * 170.53657 * 17 16 15 27 27 H 1.08999 * 109.47256 * 269.99544 * 1 2 3 28 28 H 1.09000 * 109.47129 * 30.00495 * 1 2 3 29 29 H 1.09004 * 109.47245 * 149.99832 * 1 2 3 30 30 H 1.09003 * 109.47165 * 35.00085 * 3 2 1 31 31 H 1.09004 * 109.47350 * 155.00475 * 3 2 1 32 32 H 0.96991 * 119.99655 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00315 * 245.00696 * 15 12 2 34 34 H 1.09001 * 109.47094 * 44.63195 * 16 15 12 35 35 H 1.09002 * 109.47213 * 284.63126 * 16 15 12 36 36 H 1.07997 * 120.41829 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.78773 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.41405 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.62076 * 179.69919 * 22 21 20 40 40 H 1.09005 * 113.61438 * 203.67638 * 24 17 16 41 41 H 1.08997 * 113.61995 * 334.58156 * 24 17 16 42 42 H 1.08995 * 113.61371 * 270.88216 * 25 24 17 43 43 H 1.09003 * 113.61905 * 139.97387 * 25 24 17 44 44 H 1.08995 * 113.61806 * 25.34977 * 26 17 16 45 45 H 1.09006 * 113.61270 * 156.25749 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6664 7 7 3.5017 3.6479 -0.6704 8 14 3.1776 3.5672 -3.4207 9 1 2.5302 2.6073 -4.3506 10 1 2.5259 4.8956 -3.5471 11 1 4.6184 3.6884 -3.7592 12 16 2.2929 -1.4342 -0.0006 13 8 3.5758 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.3946 -2.1788 2.4392 17 6 1.8866 -2.8947 3.6988 18 6 2.6440 -4.1613 3.3940 19 6 2.0376 -5.1585 2.6534 20 6 2.7429 -6.3200 2.3789 21 6 4.0378 -6.4353 2.8614 22 6 4.5763 -5.3987 3.5994 23 7 3.8775 -4.3056 3.8370 24 6 2.6080 -1.9697 4.6932 25 6 1.2302 -1.6997 5.3206 26 6 0.7993 -3.0702 4.7720 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5895 31 1 3.1858 1.1176 0.4342 32 1 3.9651 4.4815 -0.8470 33 1 3.4388 -1.8968 1.9392 34 1 0.7047 -2.8271 1.8990 35 1 0.8833 -1.2583 2.7208 36 1 1.0268 -5.0347 2.2938 37 1 2.2944 -7.1160 1.8031 38 1 4.6167 -7.3260 2.6662 39 1 5.5824 -5.4828 3.9828 40 1 3.2952 -2.4939 5.3575 41 1 3.0552 -1.0916 4.2274 42 1 0.7007 -0.8618 4.8673 43 1 1.2481 -1.6513 6.4094 44 1 -0.2137 -3.0806 4.3697 45 1 0.9919 -3.8952 5.4579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352633604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:48 Heat of formation + Delta-G solvation = -42.875009 kcal Electronic energy + Delta-G solvation = -28348.522444 eV Core-core repulsion = 24492.506330 eV Total energy + Delta-G solvation = -3856.016115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71727 -39.60295 -38.28904 -37.21446 -36.86715 -35.45575 -34.50312 -33.33555 -32.28344 -29.66597 -28.26626 -26.76567 -26.61279 -25.35357 -24.21443 -24.14267 -22.86538 -20.43768 -19.73201 -18.96559 -18.45655 -18.33118 -17.97749 -17.30214 -17.09340 -16.82599 -16.35668 -16.09023 -15.58814 -15.43084 -15.12720 -14.94844 -14.78608 -14.37363 -14.09855 -14.04042 -13.92076 -13.78214 -13.34420 -13.19718 -13.14607 -13.08036 -13.03186 -12.93612 -12.63475 -12.51771 -12.46111 -12.38910 -11.98208 -11.73106 -11.54020 -11.36972 -11.22320 -10.76034 -10.61886 -10.52080 -10.22450 -9.83685 -9.76955 -8.21055 -6.32908 -0.33386 0.21137 0.40451 1.37653 1.40388 1.51919 2.04064 2.39813 2.61187 2.87371 3.09852 3.19562 3.38851 3.60558 3.73029 3.78665 3.98712 4.00545 4.08463 4.11974 4.25489 4.30401 4.37895 4.53430 4.58995 4.73366 4.78683 4.80094 4.85694 4.89750 4.97966 5.01379 5.09883 5.12831 5.18661 5.20448 5.25813 5.31874 5.38595 5.45882 5.59905 5.69687 5.82796 5.84706 6.05154 6.11657 6.75710 7.10868 7.35988 8.86677 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003412 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.757296 B = 8203.604307 C = 8702.004460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.001 6.001 3 C 0.273 3.727 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.280 1.280 12 S 2.800 3.200 13 O -1.016 7.016 14 O -1.005 7.005 15 N -1.119 6.119 16 C 0.141 3.859 17 C -0.048 4.048 18 C 0.134 3.866 19 C -0.178 4.178 20 C -0.083 4.083 21 C -0.180 4.180 22 C 0.082 3.918 23 N -0.502 5.502 24 C -0.121 4.121 25 C -0.137 4.137 26 C -0.105 4.105 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.013 0.987 32 H 0.267 0.733 33 H 0.415 0.585 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -18.218 13.955 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.843 5.843 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.193 1.193 11 H -0.206 1.206 12 S 2.807 3.193 13 O -1.000 7.000 14 O -0.988 6.988 15 N -0.880 5.880 16 C 0.015 3.985 17 C -0.051 4.051 18 C -0.003 4.003 19 C -0.198 4.198 20 C -0.109 4.109 21 C -0.200 4.200 22 C -0.075 4.075 23 N -0.211 5.211 24 C -0.159 4.159 25 C -0.175 4.175 26 C -0.143 4.143 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.190 0.810 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.997 -17.871 13.631 23.262 hybrid contribution 0.570 0.064 -1.091 1.233 sum -5.427 -17.806 12.540 22.444 Atomic orbital electron populations 1.21645 0.77877 1.03656 1.02804 1.57450 1.15821 1.21738 1.89299 1.18592 0.90340 0.80294 0.95835 1.21882 1.36234 1.06608 0.94243 0.93060 1.25750 0.94786 0.96772 1.01465 1.70014 1.37879 1.15727 1.32703 0.85535 0.78004 0.78483 0.79860 1.19439 1.19283 1.20600 1.01138 0.72045 0.72624 0.73453 1.93567 1.43284 1.85520 1.77639 1.93491 1.67535 1.60072 1.77740 1.55766 1.15748 1.85550 1.30982 1.21282 0.87026 1.00320 0.89874 1.21009 0.97988 0.91751 0.94339 1.21020 0.90593 0.95220 0.93483 1.22174 1.02629 0.94941 1.00031 1.21973 0.94560 0.97652 0.96679 1.22456 0.96618 1.01488 0.99391 1.23201 1.00320 0.88699 0.95254 1.67424 1.07255 1.24788 1.21630 1.22835 0.97421 0.98196 0.97423 1.22886 0.95886 0.97355 1.01324 1.22886 0.97746 0.98301 0.95409 0.90388 0.91122 0.90587 0.95035 0.96910 0.92369 0.75050 0.89447 0.89209 0.83892 0.82612 0.82244 0.80974 0.89422 0.92440 0.89198 0.90191 0.88821 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.73 10.68 127.77 1.36 4.10 16 2 N -1.00 -41.18 3.23 -543.23 -1.75 -42.93 16 3 C 0.27 13.98 5.08 85.63 0.43 14.42 16 4 C -0.55 -31.64 9.38 25.60 0.24 -31.40 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.67 5.46 84.66 0.46 1.14 16 7 N -0.92 -54.69 13.29 21.45 0.28 -54.41 16 8 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 S 2.80 112.77 6.10 -56.49 -0.34 112.43 16 13 O -1.02 -51.50 17.11 -128.00 -2.19 -53.69 16 14 O -1.01 -40.78 16.21 -128.00 -2.07 -42.86 16 15 N -1.12 -34.39 5.74 -187.48 -1.08 -35.47 16 16 C 0.14 3.25 5.28 86.38 0.46 3.71 16 17 C -0.05 -0.99 0.68 -52.40 -0.04 -1.03 16 18 C 0.13 3.09 5.38 42.55 0.23 3.32 16 19 C -0.18 -3.72 9.38 22.36 0.21 -3.51 16 20 C -0.08 -1.48 10.18 22.47 0.23 -1.25 16 21 C -0.18 -3.02 10.11 22.36 0.23 -2.80 16 22 C 0.08 1.63 11.18 84.67 0.95 2.57 16 23 N -0.50 -12.18 9.01 -183.89 -1.66 -13.84 16 24 C -0.12 -2.54 6.85 31.12 0.21 -2.32 16 25 C -0.14 -2.14 7.73 31.12 0.24 -1.90 16 26 C -0.10 -1.55 7.21 31.12 0.22 -1.33 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 29 H 0.08 2.27 7.02 -2.38 -0.02 2.25 16 30 H 0.03 1.62 8.11 -2.39 -0.02 1.60 16 31 H 0.01 0.72 7.61 -2.39 -0.02 0.70 16 32 H 0.27 14.83 8.31 -92.72 -0.77 14.06 16 33 H 0.42 12.91 8.51 -96.74 -0.82 12.08 16 34 H 0.09 1.87 7.19 -2.39 -0.02 1.86 16 35 H 0.09 1.80 7.31 -2.39 -0.02 1.78 16 36 H 0.14 2.58 7.63 -2.91 -0.02 2.55 16 37 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.09 1.95 7.43 -2.38 -0.02 1.93 16 41 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 42 H 0.09 1.34 7.60 -2.39 -0.02 1.32 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 45 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 Total: -1.00 -76.03 383.46 -1.17 -77.20 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.17 Total: 22.64 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 5.44 Total: -16.28 kcal Atomic # 7 Polarization: -142.44 SS G_CDS: -4.20 Total: -146.64 kcal Atomic # 8 Polarization: -92.28 SS G_CDS: -4.26 Total: -96.55 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 112.77 SS G_CDS: -0.34 Total: 112.43 kcal Total: -76.03 -1.17 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352633604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.328 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds