Wall clock time and date at job start Tue Mar 31 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00279 * 2 1 4 4 C 1.50701 * 109.46942 * 269.99926 * 3 2 1 5 5 H 1.07992 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99820 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99950 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46791 * 119.99883 * 8 6 4 11 11 H 1.48500 * 109.47032 * 239.99609 * 8 6 4 12 12 C 1.34778 * 119.99820 * 180.02562 * 2 1 3 13 13 O 1.21551 * 120.00568 * 174.26701 * 12 2 1 14 14 C 1.47868 * 120.00017 * 354.26420 * 12 2 1 15 15 C 1.39619 * 120.11269 * 147.95565 * 14 12 2 16 16 C 1.37973 * 120.00006 * 180.02562 * 15 14 12 17 17 C 1.38247 * 120.22711 * 359.97438 * 16 15 14 18 18 C 1.38964 * 120.22123 * 359.97438 * 17 16 15 19 19 N 1.39879 * 120.00305 * 180.02562 * 18 17 16 20 20 C 1.34775 * 119.99942 * 324.18977 * 19 18 17 21 21 O 1.21563 * 120.00215 * 4.71341 * 20 19 18 22 22 C 1.47814 * 120.00107 * 184.71430 * 20 19 18 23 23 C 1.40035 * 120.55789 * 179.72224 * 22 20 19 24 24 C 1.38361 * 118.28479 * 179.78192 * 23 22 20 25 25 C 1.38355 * 119.30116 * 0.49293 * 24 23 22 26 26 N 1.31928 * 121.08659 * 359.74664 * 25 24 23 27 27 C 1.31693 * 121.87688 * 359.97438 * 26 25 24 28 28 C 1.38660 * 119.99806 * 0.02562 * 18 17 16 29 29 H 1.09003 * 109.46826 * 270.80185 * 1 2 3 30 30 H 1.09003 * 109.46800 * 30.79520 * 1 2 3 31 31 H 1.08997 * 109.47156 * 150.80206 * 1 2 3 32 32 H 1.08996 * 109.47312 * 30.00511 * 3 2 1 33 33 H 1.09008 * 109.46967 * 150.00167 * 3 2 1 34 34 H 0.96997 * 120.00010 * 180.02562 * 7 6 4 35 35 H 1.07996 * 119.99439 * 359.97438 * 15 14 12 36 36 H 1.07999 * 119.88561 * 180.02562 * 16 15 14 37 37 H 1.08000 * 119.89262 * 180.02562 * 17 16 15 38 38 H 0.97002 * 120.00276 * 144.19525 * 19 18 17 39 39 H 1.07998 * 120.86264 * 359.97438 * 23 22 20 40 40 H 1.07994 * 120.34857 * 180.21571 * 24 23 22 41 41 H 1.07998 * 119.45577 * 179.76855 * 25 24 23 42 42 H 1.08007 * 119.71287 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.11072 * 180.26908 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5553 3.6169 -0.6731 8 14 3.4378 3.4169 -3.4339 9 1 2.8588 2.4176 -4.3673 10 1 2.8008 4.7380 -3.6665 11 1 4.9003 3.5245 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3498 -1.1700 -0.1057 14 6 1.4051 -2.4446 0.1269 15 6 1.8863 -3.5947 -0.5018 16 6 1.1995 -4.7852 -0.3818 17 6 0.0345 -4.8449 0.3602 18 6 -0.4523 -3.7062 0.9907 19 7 -1.6312 -3.7719 1.7407 20 6 -2.6401 -4.5715 1.3417 21 8 -2.4944 -5.2996 0.3792 22 6 -3.9239 -4.5631 2.0744 23 6 -4.9818 -5.3848 1.6664 24 6 -6.1610 -5.3428 2.3890 25 6 -6.2597 -4.4910 3.4748 26 7 -5.2477 -3.7242 3.8333 27 6 -4.1037 -3.7324 3.1809 28 6 0.2305 -2.5049 0.8763 29 1 -0.3633 0.0144 1.0276 30 1 -0.3633 0.8828 -0.5262 31 1 -0.3633 -0.8971 -0.5013 32 1 1.6086 2.0283 0.5139 33 1 3.1501 1.1383 0.5138 34 1 4.0322 4.4428 -0.8504 35 1 2.7958 -3.5520 -1.0826 36 1 1.5736 -5.6738 -0.8685 37 1 -0.4986 -5.7798 0.4509 38 1 -1.7226 -3.2420 2.5481 39 1 -4.8791 -6.0369 0.8116 40 1 -6.9970 -5.9650 2.1059 41 1 -7.1802 -4.4534 4.0384 42 1 -3.2983 -3.0898 3.5046 43 1 -0.1438 -1.6198 1.3691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354184817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:13 Heat of formation + Delta-G solvation = 15.488115 kcal Electronic energy + Delta-G solvation = -27726.233231 eV Core-core repulsion = 23737.303980 eV Total energy + Delta-G solvation = -3988.929251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33929 -40.24192 -39.31624 -37.72908 -35.20212 -34.88931 -33.09367 -32.74626 -32.21277 -31.10001 -29.53255 -27.73991 -26.11753 -25.31094 -24.14524 -23.95108 -22.59549 -22.29206 -21.03058 -19.18018 -18.75899 -17.41369 -17.29845 -16.62231 -16.52853 -16.33164 -15.82532 -15.63367 -15.48678 -15.25183 -14.79293 -14.41712 -14.27762 -14.15102 -13.88265 -13.65636 -13.63063 -12.90799 -12.83877 -12.67405 -12.45191 -12.15083 -12.01467 -11.84366 -11.25583 -11.10118 -10.87495 -10.71706 -10.61339 -10.50900 -10.43332 -10.16821 -9.95513 -9.81103 -9.63587 -9.11809 -8.80369 -8.44431 -8.30311 -7.69608 -6.05182 -4.09522 0.04231 0.64231 1.08898 1.25729 2.35869 2.54893 3.26303 3.30178 3.35567 3.38163 3.42927 3.69762 3.80983 4.07214 4.15133 4.22598 4.32637 4.42982 4.44813 4.78512 4.82892 4.88405 5.00437 5.19512 5.28942 5.29986 5.35959 5.40719 5.45382 5.51311 5.63508 5.78453 5.86320 5.96055 6.11395 6.18593 6.19371 6.40833 6.48778 6.87318 6.96524 7.03777 7.27507 7.39050 7.49325 7.64615 7.91180 8.21387 8.33632 8.87276 9.02604 9.55503 11.03028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002358 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.293245 B =11873.993552 C =12846.544879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.594 5.594 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.544 3.456 13 O -0.530 6.530 14 C -0.098 4.098 15 C -0.076 4.076 16 C -0.111 4.111 17 C -0.104 4.104 18 C 0.126 3.874 19 N -0.664 5.664 20 C 0.565 3.435 21 O -0.514 6.514 22 C -0.188 4.188 23 C -0.014 4.014 24 C -0.179 4.179 25 C 0.124 3.876 26 N -0.486 5.486 27 C 0.137 3.863 28 C -0.117 4.117 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.410 0.590 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.153 -19.153 8.810 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.331 3.669 13 O -0.408 6.408 14 C -0.102 4.102 15 C -0.096 4.096 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.033 3.967 19 N -0.309 5.309 20 C 0.353 3.647 21 O -0.389 6.389 22 C -0.193 4.193 23 C -0.040 4.040 24 C -0.199 4.199 25 C -0.033 4.033 26 N -0.194 5.194 27 C -0.021 4.021 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.247 0.753 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.464 -18.899 8.843 28.534 hybrid contribution 0.091 0.201 -1.275 1.294 sum -19.373 -18.698 7.567 27.968 Atomic orbital electron populations 1.21957 0.81606 1.02989 0.99927 1.48083 1.06141 1.07643 1.70703 1.19345 0.92465 0.77808 0.97736 1.21456 1.36377 1.06220 0.92260 0.92340 1.24940 0.95342 0.96389 0.97499 1.69939 1.38460 1.14382 1.30669 0.86431 0.78099 0.78279 0.84563 1.19783 1.20974 1.20837 1.18171 0.87243 0.83247 0.78284 1.90766 1.13642 1.86838 1.49557 1.20055 0.95307 0.95252 0.99600 1.21309 0.99411 0.91192 0.97665 1.21003 0.94839 0.97941 0.99229 1.21328 0.95589 0.97748 0.97715 1.17498 0.87415 0.93889 0.97927 1.43273 1.14006 1.45801 1.27860 1.18102 0.82991 0.79965 0.83663 1.90802 1.81881 1.39159 1.27102 1.20899 0.95794 1.02708 0.99926 1.21781 0.90819 0.93990 0.97423 1.22222 0.98916 1.01412 0.97312 1.23093 0.97087 0.89710 0.93360 1.67745 1.00274 1.21473 1.29892 1.23033 0.95159 0.94145 0.89808 1.21525 0.95440 0.96414 1.00351 0.93653 0.90714 0.91761 0.94744 0.93783 0.92757 0.84778 0.85172 0.84427 0.75271 0.83277 0.83726 0.81965 0.82284 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 8.80 59.85 0.53 1.79 16 2 N -0.59 -12.70 2.86 -184.06 -0.53 -13.22 16 3 C 0.25 6.40 5.12 -5.19 -0.03 6.37 16 4 C -0.52 -14.96 9.39 -34.44 -0.32 -15.29 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.54 11.69 7.39 -12.32 -0.09 11.60 16 13 O -0.53 -13.66 16.40 5.32 0.09 -13.57 16 14 C -0.10 -1.63 5.26 -104.99 -0.55 -2.18 16 15 C -0.08 -1.15 9.60 -39.16 -0.38 -1.53 16 16 C -0.11 -1.39 10.02 -39.68 -0.40 -1.79 16 17 C -0.10 -1.29 8.69 -39.31 -0.34 -1.63 16 18 C 0.13 1.50 6.28 -83.76 -0.53 0.97 16 19 N -0.66 -5.97 5.28 -10.76 -0.06 -6.03 16 20 C 0.57 5.63 7.62 -12.34 -0.09 5.54 16 21 O -0.51 -6.67 13.89 5.31 0.07 -6.60 16 22 C -0.19 -1.48 5.89 -104.83 -0.62 -2.10 16 23 C -0.01 -0.09 9.72 -38.86 -0.38 -0.47 16 24 C -0.18 -0.88 10.10 -39.49 -0.40 -1.28 16 25 C 0.12 0.69 11.17 -17.47 -0.20 0.49 16 26 N -0.49 -3.75 10.35 -12.90 -0.13 -3.89 16 27 C 0.14 0.95 10.71 -17.13 -0.18 0.77 16 28 C -0.12 -1.55 7.55 -38.97 -0.29 -1.84 16 29 H 0.05 0.58 6.74 -51.93 -0.35 0.23 16 30 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 31 H 0.06 0.93 5.94 -51.93 -0.31 0.62 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.29 7.51 -51.92 -0.39 0.90 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.13 2.06 7.95 -52.49 -0.42 1.64 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.14 1.68 6.26 -52.49 -0.33 1.35 16 38 H 0.41 2.40 6.90 -40.82 -0.28 2.12 16 39 H 0.15 0.95 7.74 -52.49 -0.41 0.54 16 40 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 41 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.16 0.70 6.43 -52.48 -0.34 0.36 16 43 H 0.14 1.64 5.09 -52.49 -0.27 1.37 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -36.78 368.69 -8.39 -45.16 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.74 Total: 0.37 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -4.36 Total: 1.06 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.02 Total: -49.00 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.16 Total: -20.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.78 -8.39 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354184817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.653 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds