Wall clock time and date at job start Tue Mar 31 2020 23:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00279 * 2 1 4 4 C 1.50701 * 109.46942 * 269.99926 * 3 2 1 5 5 H 1.07992 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99820 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99950 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00009 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46791 * 119.99883 * 8 6 4 11 11 H 1.48500 * 109.47032 * 239.99609 * 8 6 4 12 12 C 1.34778 * 119.99820 * 180.02562 * 2 1 3 13 13 O 1.21551 * 120.00568 * 174.26701 * 12 2 1 14 14 C 1.47868 * 120.00017 * 354.26420 * 12 2 1 15 15 C 1.39619 * 120.11269 * 147.95565 * 14 12 2 16 16 C 1.37973 * 120.00006 * 180.02562 * 15 14 12 17 17 C 1.38247 * 120.22711 * 359.97438 * 16 15 14 18 18 C 1.38964 * 120.22123 * 359.97438 * 17 16 15 19 19 N 1.39879 * 120.00305 * 180.02562 * 18 17 16 20 20 C 1.34775 * 119.99942 * 324.18977 * 19 18 17 21 21 O 1.21563 * 120.00215 * 4.71341 * 20 19 18 22 22 C 1.47814 * 120.00107 * 184.71430 * 20 19 18 23 23 C 1.40035 * 120.55789 * 179.72224 * 22 20 19 24 24 C 1.38361 * 118.28479 * 179.78192 * 23 22 20 25 25 C 1.38355 * 119.30116 * 0.49293 * 24 23 22 26 26 N 1.31928 * 121.08659 * 359.74664 * 25 24 23 27 27 C 1.31693 * 121.87688 * 359.97438 * 26 25 24 28 28 C 1.38660 * 119.99806 * 0.02562 * 18 17 16 29 29 H 1.09003 * 109.46826 * 270.80185 * 1 2 3 30 30 H 1.09003 * 109.46800 * 30.79520 * 1 2 3 31 31 H 1.08997 * 109.47156 * 150.80206 * 1 2 3 32 32 H 1.08996 * 109.47312 * 30.00511 * 3 2 1 33 33 H 1.09008 * 109.46967 * 150.00167 * 3 2 1 34 34 H 0.96997 * 120.00010 * 180.02562 * 7 6 4 35 35 H 1.07996 * 119.99439 * 359.97438 * 15 14 12 36 36 H 1.07999 * 119.88561 * 180.02562 * 16 15 14 37 37 H 1.08000 * 119.89262 * 180.02562 * 17 16 15 38 38 H 0.97002 * 120.00276 * 144.19525 * 19 18 17 39 39 H 1.07998 * 120.86264 * 359.97438 * 23 22 20 40 40 H 1.07994 * 120.34857 * 180.21571 * 24 23 22 41 41 H 1.07998 * 119.45577 * 179.76855 * 25 24 23 42 42 H 1.08007 * 119.71287 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.11072 * 180.26908 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5553 3.6169 -0.6731 8 14 3.4378 3.4169 -3.4339 9 1 2.8588 2.4176 -4.3673 10 1 2.8008 4.7380 -3.6665 11 1 4.9003 3.5245 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3498 -1.1700 -0.1057 14 6 1.4051 -2.4446 0.1269 15 6 1.8863 -3.5947 -0.5018 16 6 1.1995 -4.7852 -0.3818 17 6 0.0345 -4.8449 0.3602 18 6 -0.4523 -3.7062 0.9907 19 7 -1.6312 -3.7719 1.7407 20 6 -2.6401 -4.5715 1.3417 21 8 -2.4944 -5.2996 0.3792 22 6 -3.9239 -4.5631 2.0744 23 6 -4.9818 -5.3848 1.6664 24 6 -6.1610 -5.3428 2.3890 25 6 -6.2597 -4.4910 3.4748 26 7 -5.2477 -3.7242 3.8333 27 6 -4.1037 -3.7324 3.1809 28 6 0.2305 -2.5049 0.8763 29 1 -0.3633 0.0144 1.0276 30 1 -0.3633 0.8828 -0.5262 31 1 -0.3633 -0.8971 -0.5013 32 1 1.6086 2.0283 0.5139 33 1 3.1501 1.1383 0.5138 34 1 4.0322 4.4428 -0.8504 35 1 2.7958 -3.5520 -1.0826 36 1 1.5736 -5.6738 -0.8685 37 1 -0.4986 -5.7798 0.4509 38 1 -1.7226 -3.2420 2.5481 39 1 -4.8791 -6.0369 0.8116 40 1 -6.9970 -5.9650 2.1059 41 1 -7.1802 -4.4534 4.0384 42 1 -3.2983 -3.0898 3.5046 43 1 -0.1438 -1.6198 1.3691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354184817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:12 Heat of formation + Delta-G solvation = -9.455093 kcal Electronic energy + Delta-G solvation = -27727.314850 eV Core-core repulsion = 23737.303980 eV Total energy + Delta-G solvation = -3990.010870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09312 -41.23603 -40.39130 -38.93885 -36.76580 -36.00792 -34.82468 -33.60062 -32.76700 -32.41348 -30.46534 -29.62051 -27.64978 -26.00813 -25.64052 -24.57402 -23.96882 -23.27456 -22.03433 -20.49125 -19.46757 -18.75117 -18.52524 -17.85763 -17.55009 -17.39762 -17.13770 -16.63662 -16.50825 -16.33529 -16.10706 -15.99975 -15.32288 -14.94623 -14.74129 -14.63877 -14.47964 -14.33158 -14.12649 -13.83800 -13.74785 -13.50643 -13.22853 -13.09139 -12.98515 -12.84237 -12.57619 -12.31838 -12.21772 -11.72316 -11.57948 -11.34158 -10.99339 -10.80084 -10.65902 -10.49510 -10.26649 -9.95258 -9.52139 -9.26950 -8.24276 -6.38387 -0.49228 -0.08477 0.19541 0.26142 1.35158 1.37653 1.49486 1.63824 1.71872 1.93371 2.25832 2.40905 2.76190 2.85037 3.05361 3.24927 3.53151 3.61526 3.77944 3.81235 3.91088 4.00529 4.11428 4.20101 4.30895 4.38050 4.39779 4.44400 4.58260 4.66065 4.76345 4.89764 4.97218 4.98756 5.07939 5.13884 5.17674 5.21123 5.33829 5.43159 5.52995 5.56710 5.78580 5.87173 6.03620 6.23173 6.63383 6.71009 6.82362 6.91492 7.22773 7.37818 8.83026 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002358 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.293245 B =11873.993552 C =12846.544879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.267 1.267 11 H -0.280 1.280 12 C 0.538 3.462 13 O -0.589 6.589 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.100 4.100 17 C -0.101 4.101 18 C 0.136 3.864 19 N -0.653 5.653 20 C 0.569 3.431 21 O -0.547 6.547 22 C -0.202 4.202 23 C -0.025 4.025 24 C -0.171 4.171 25 C 0.122 3.878 26 N -0.511 5.511 27 C 0.136 3.864 28 C -0.107 4.107 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.001 0.999 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.427 0.573 39 H 0.149 0.851 40 H 0.175 0.825 41 H 0.191 0.809 42 H 0.179 0.821 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.210 -20.351 9.046 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.192 1.192 11 H -0.206 1.206 12 C 0.327 3.673 13 O -0.471 6.471 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.119 4.119 17 C -0.121 4.121 18 C 0.042 3.958 19 N -0.300 5.300 20 C 0.358 3.642 21 O -0.425 6.425 22 C -0.207 4.207 23 C -0.051 4.051 24 C -0.190 4.190 25 C -0.034 4.034 26 N -0.220 5.220 27 C -0.022 4.022 28 C -0.127 4.127 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.267 0.733 39 H 0.167 0.833 40 H 0.192 0.808 41 H 0.208 0.792 42 H 0.196 0.804 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.588 -20.091 9.116 31.575 hybrid contribution 0.907 0.474 -1.264 1.627 sum -21.681 -19.617 7.852 30.275 Atomic orbital electron populations 1.22256 0.78125 1.03667 1.02656 1.48068 1.08301 1.06184 1.70452 1.18844 0.91198 0.79947 0.96181 1.21688 1.36899 1.06506 0.93002 0.93302 1.25828 0.94866 0.96395 1.01951 1.70041 1.38861 1.14841 1.32835 0.85382 0.77951 0.78386 0.79174 1.19492 1.19179 1.20624 1.18939 0.86885 0.84679 0.76763 1.90715 1.16317 1.87838 1.52255 1.19661 0.96875 0.93018 1.02631 1.21314 0.99581 0.91886 0.98221 1.21210 0.94322 0.97707 0.98626 1.21551 0.95262 0.98242 0.97067 1.17475 0.87870 0.93112 0.97379 1.43194 1.12847 1.45854 1.28057 1.18413 0.83511 0.79106 0.83162 1.90783 1.82500 1.40587 1.28645 1.20767 0.95056 1.04208 1.00659 1.21975 0.91402 0.93942 0.97791 1.22522 0.98964 1.01114 0.96401 1.23644 0.97500 0.88793 0.93439 1.67806 1.00975 1.22578 1.30618 1.23314 0.95650 0.93990 0.89274 1.21507 0.94117 0.97603 0.99482 0.89724 0.91247 0.89911 0.94900 0.98105 0.92305 0.86081 0.82421 0.83701 0.73316 0.83323 0.80771 0.79247 0.80373 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.30 8.80 127.77 1.12 3.42 16 2 N -0.60 -26.27 2.86 -854.53 -2.44 -28.71 16 3 C 0.26 14.13 5.12 85.63 0.44 14.57 16 4 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 8 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.54 24.03 7.39 86.79 0.64 24.68 16 13 O -0.59 -32.33 16.40 -3.88 -0.06 -32.39 16 14 C -0.12 -3.93 5.26 -20.10 -0.11 -4.04 16 15 C -0.09 -2.75 9.60 22.54 0.22 -2.53 16 16 C -0.10 -2.36 10.02 22.21 0.22 -2.14 16 17 C -0.10 -2.31 8.69 22.45 0.19 -2.11 16 18 C 0.14 2.93 6.28 38.13 0.24 3.17 16 19 N -0.65 -10.08 5.28 -306.22 -1.62 -11.69 16 20 C 0.57 10.18 7.62 86.78 0.66 10.84 16 21 O -0.55 -13.31 13.89 -3.91 -0.05 -13.37 16 22 C -0.20 -2.76 5.89 -20.00 -0.12 -2.88 16 23 C -0.02 -0.29 9.72 22.74 0.22 -0.07 16 24 C -0.17 -1.17 10.10 22.33 0.23 -0.94 16 25 C 0.12 1.00 11.17 84.71 0.95 1.94 16 26 N -0.51 -6.65 10.35 -194.74 -2.01 -8.66 16 27 C 0.14 1.57 10.71 85.03 0.91 2.48 16 28 C -0.11 -2.64 7.55 22.66 0.17 -2.47 16 29 H 0.08 1.95 6.74 -2.39 -0.02 1.93 16 30 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 31 H 0.08 2.26 5.94 -2.39 -0.01 2.24 16 32 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.00 0.05 7.51 -2.38 -0.02 0.03 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.12 3.92 7.95 -2.91 -0.02 3.90 16 36 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.15 3.21 6.26 -2.91 -0.02 3.19 16 38 H 0.43 3.72 6.90 -92.71 -0.64 3.08 16 39 H 0.15 1.68 7.74 -2.91 -0.02 1.66 16 40 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.19 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.18 1.08 6.43 -2.91 -0.02 1.06 16 43 H 0.16 3.27 5.09 -2.91 -0.01 3.25 16 Total: -1.00 -83.68 368.69 3.25 -80.43 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.43 Total: 9.33 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.69 Total: 13.22 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -5.79 Total: -104.94 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.12 Total: -45.75 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -83.68 3.25 -80.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354184817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.979 kcal (2) G-P(sol) polarization free energy of solvation -83.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds