Wall clock time and date at job start Tue Mar 31 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 120.00336 * 2 1 4 4 C 1.50699 * 109.46515 * 84.21689 * 3 2 1 5 5 H 1.07998 * 120.00767 * 355.57571 * 4 3 2 6 6 C 1.37883 * 119.99502 * 175.57443 * 4 3 2 7 7 N 1.31510 * 120.00021 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47292 * 269.99896 * 8 6 4 10 10 H 1.48505 * 109.47176 * 29.99824 * 8 6 4 11 11 H 1.48499 * 109.47469 * 149.99960 * 8 6 4 12 12 S 1.65602 * 119.99950 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40370 * 197.66246 * 12 2 1 14 14 O 1.42094 * 106.40452 * 330.57941 * 12 2 1 15 15 N 1.65597 * 107.21926 * 84.12226 * 12 2 1 16 16 C 1.46498 * 119.99973 * 64.83652 * 15 12 2 17 17 H 1.08995 * 110.27568 * 22.28994 * 16 15 12 18 18 C 1.53996 * 110.30719 * 260.09656 * 16 15 12 19 19 N 1.47903 * 107.05988 * 242.31031 * 18 16 15 20 20 C 1.48537 * 105.81786 * 334.67068 * 19 18 16 21 21 C 1.54595 * 110.30970 * 144.38335 * 16 15 12 22 22 H 1.08998 * 110.72828 * 22.51175 * 21 16 15 23 23 C 1.50704 * 110.72280 * 259.22954 * 21 16 15 24 24 C 1.38231 * 120.00100 * 299.72632 * 23 21 16 25 25 C 1.38239 * 120.00042 * 179.76875 * 24 23 21 26 26 C 1.38226 * 119.99870 * 0.50488 * 25 24 23 27 27 C 1.38241 * 120.00420 * 359.74649 * 26 25 24 28 28 C 1.38234 * 119.99742 * 120.00037 * 23 21 16 29 29 H 1.08998 * 109.47008 * 89.99589 * 1 2 3 30 30 H 1.08998 * 109.46882 * 209.99853 * 1 2 3 31 31 H 1.08995 * 109.46702 * 329.99573 * 1 2 3 32 32 H 1.09003 * 109.46538 * 324.22116 * 3 2 1 33 33 H 1.08999 * 109.47329 * 204.21928 * 3 2 1 34 34 H 0.97004 * 120.00217 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99749 * 244.83320 * 15 12 2 36 36 H 1.08999 * 109.92087 * 1.66242 * 18 16 15 37 37 H 1.09000 * 109.91604 * 122.95839 * 18 16 15 38 38 H 1.00893 * 111.00183 * 95.18120 * 19 18 16 39 39 H 1.09001 * 110.66940 * 280.77291 * 20 19 18 40 40 H 1.09007 * 110.66921 * 157.64284 * 20 19 18 41 41 H 1.08005 * 119.99789 * 359.97438 * 24 23 21 42 42 H 1.08003 * 119.99615 * 180.23034 * 25 24 23 43 43 H 1.08004 * 120.00396 * 179.73233 * 26 25 24 44 44 H 1.07990 * 120.00340 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00340 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3247 1.7752 1.4136 5 1 1.8414 1.2470 2.2221 6 6 3.0582 2.9132 1.6748 7 7 3.6472 3.5562 0.6904 8 14 3.2165 3.5407 3.4271 9 1 2.1097 4.4879 3.7156 10 1 3.1473 2.3963 4.3709 11 1 4.5183 4.2369 3.5879 12 16 2.2930 -1.4342 -0.0006 13 8 3.6186 -1.1324 0.4131 14 8 1.4654 -2.3756 0.6685 15 7 2.3978 -1.9390 -1.5743 16 6 3.1616 -1.1530 -2.5464 17 1 3.8931 -0.5273 -2.0350 18 6 2.2137 -0.2856 -3.3953 19 7 2.3575 -0.7313 -4.7983 20 6 3.7151 -1.3260 -4.8970 21 6 3.8671 -2.0871 -3.5561 22 1 3.3659 -3.0540 -3.6025 23 6 5.3218 -2.2555 -3.2005 24 6 6.1558 -1.1539 -3.1615 25 6 7.4892 -1.3077 -2.8305 26 6 7.9908 -2.5645 -2.5488 27 6 7.1580 -3.6670 -2.5929 28 6 5.8234 -3.5125 -2.9187 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.6572 2.0002 -0.6009 33 1 3.1909 1.1148 -0.4216 34 1 4.1636 4.3566 0.8741 35 1 1.9535 -2.7551 -1.8524 36 1 1.1848 -0.4269 -3.0645 37 1 2.4936 0.7643 -3.3087 38 1 1.6482 -1.4078 -5.0373 39 1 4.4714 -0.5460 -4.9845 40 1 3.7727 -2.0154 -5.7395 41 1 5.7650 -0.1724 -3.3863 42 1 8.1399 -0.4464 -2.7965 43 1 9.0335 -2.6854 -2.2945 44 1 7.5500 -4.6490 -2.3732 45 1 5.1729 -4.3739 -2.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420457556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:31 Heat of formation + Delta-G solvation = -43.330843 kcal Electronic energy + Delta-G solvation = -28744.194160 eV Core-core repulsion = 24888.158279 eV Total energy + Delta-G solvation = -3856.035881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.06056 -38.11119 -36.60507 -35.50379 -35.15143 -33.78041 -32.44564 -32.27308 -30.86716 -27.94072 -27.81297 -27.47429 -25.09078 -23.15429 -22.30345 -22.26933 -21.55662 -20.23939 -18.96906 -17.45465 -17.18296 -16.84586 -16.43722 -16.25829 -15.57084 -15.33831 -15.03340 -14.68942 -14.43706 -14.25068 -13.70903 -13.52116 -13.34155 -13.24783 -13.06354 -12.74948 -12.45902 -12.26304 -12.16050 -11.94211 -11.67542 -11.60822 -11.46931 -11.21828 -11.13834 -11.10034 -11.05436 -11.03465 -10.80747 -10.68905 -10.51734 -10.05962 -9.77446 -9.69524 -8.94675 -8.85693 -8.45224 -8.31372 -8.07907 -6.07279 -4.11221 1.19106 1.38384 1.45638 3.30972 3.37653 3.42894 3.48413 3.76092 4.06067 4.19398 4.44254 4.54194 4.59544 4.85716 4.96650 5.02187 5.04207 5.10244 5.18038 5.20798 5.27716 5.38339 5.39718 5.51929 5.59122 5.64218 5.71774 5.82066 5.96938 6.00930 6.07076 6.10070 6.19324 6.31633 6.47967 6.53007 6.56542 6.57883 6.64381 7.04106 7.06556 7.20975 7.24932 7.38214 7.61208 7.90219 8.19713 8.91089 9.54281 11.01231 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004439 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.924356 B = 6305.539122 C = 7113.641812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 S 2.779 3.221 13 O -0.960 6.960 14 O -0.999 6.999 15 N -1.127 6.127 16 C 0.131 3.869 17 H 0.108 0.892 18 C 0.025 3.975 19 N -0.669 5.669 20 C 0.051 3.949 21 C -0.089 4.089 22 H 0.089 0.911 23 C -0.068 4.068 24 C -0.110 4.110 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.335 0.665 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -11.989 -13.231 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.210 1.210 12 S 2.786 3.214 13 O -0.943 6.943 14 O -0.984 6.984 15 N -0.883 5.883 16 C 0.022 3.978 17 H 0.126 0.874 18 C -0.106 4.106 19 N -0.295 5.295 20 C -0.079 4.079 21 C -0.110 4.110 22 H 0.107 0.893 23 C -0.069 4.069 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.742 -11.417 -12.750 17.203 hybrid contribution -0.299 -0.593 1.179 1.353 sum 1.443 -12.010 -11.572 16.740 Atomic orbital electron populations 1.21328 0.80192 1.03433 1.00080 1.57607 1.14274 1.23243 1.88703 1.19079 0.91124 0.78622 0.97694 1.21487 1.32102 1.10084 0.93477 0.92220 1.24913 0.94972 0.96526 0.97419 1.69906 1.33296 1.18699 1.31298 0.86536 0.77477 0.78928 0.84749 1.20589 1.19762 1.21030 1.02063 0.73812 0.72734 0.72765 1.93637 1.36891 1.84199 1.79591 1.93531 1.70010 1.62798 1.72014 1.56377 1.65883 1.36028 1.30060 1.22199 0.93224 0.92026 0.90393 0.87433 1.23380 1.00090 1.00561 0.86614 1.62759 1.03724 1.40464 1.22538 1.23256 0.92269 0.97380 0.94981 1.22005 0.92753 0.99878 0.96414 0.89319 1.19544 0.94187 0.93571 0.99599 1.21057 0.93672 0.98499 0.99544 1.21155 0.95608 0.97382 0.98888 1.21133 0.99751 0.92911 1.00465 1.21084 0.93842 0.98713 1.00216 1.20989 0.95570 0.96588 1.00350 0.94330 0.91826 0.90346 0.94962 0.94021 0.92679 0.76154 0.90323 0.88889 0.84976 0.89293 0.90335 0.85678 0.85893 0.86288 0.86317 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 10.70 59.85 0.64 2.24 16 2 N -1.00 -20.05 3.23 -123.05 -0.40 -20.44 16 3 C 0.26 6.24 5.12 -5.19 -0.03 6.22 16 4 C -0.53 -14.79 9.38 -34.44 -0.32 -15.11 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 S 2.78 54.70 6.08 -107.50 -0.65 54.04 16 13 O -0.96 -23.15 16.28 -57.17 -0.93 -24.08 16 14 O -1.00 -21.02 16.86 -57.17 -0.96 -21.98 16 15 N -1.13 -16.00 5.47 -3.74 -0.02 -16.02 16 16 C 0.13 1.79 3.18 -66.57 -0.21 1.58 16 17 H 0.11 1.81 6.59 -51.93 -0.34 1.47 16 18 C 0.02 0.31 7.32 -2.75 -0.02 0.29 16 19 N -0.67 -7.00 7.51 -110.08 -0.83 -7.82 16 20 C 0.05 0.50 6.92 -1.90 -0.01 0.49 16 21 C -0.09 -0.98 2.99 -89.91 -0.27 -1.25 16 22 H 0.09 0.85 7.67 -51.93 -0.40 0.45 16 23 C -0.07 -0.86 4.92 -104.62 -0.52 -1.38 16 24 C -0.11 -1.45 8.19 -39.58 -0.32 -1.78 16 25 C -0.11 -1.42 10.05 -39.59 -0.40 -1.82 16 26 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.40 9.69 -39.58 -0.38 -1.79 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.01 7.08 -51.93 -0.37 0.64 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.04 1.08 7.42 -51.93 -0.39 0.70 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.41 4.59 8.67 -34.46 -0.30 4.29 16 36 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.34 2.88 8.92 -39.30 -0.35 2.53 16 39 H 0.09 0.93 6.71 -51.93 -0.35 0.58 16 40 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.13 1.58 7.25 -52.48 -0.38 1.20 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.18 7.98 -52.49 -0.42 0.76 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -34.20 380.71 -11.70 -45.90 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.62 Total: 7.13 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.74 Total: -14.25 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -0.51 Total: -69.27 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.90 Total: -46.06 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.65 Total: 54.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.20 -11.70 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420457556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.567 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds