Wall clock time and date at job start Tue Mar 31 2020 23:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 120.00336 * 2 1 4 4 C 1.50699 * 109.46515 * 84.21689 * 3 2 1 5 5 H 1.07998 * 120.00767 * 355.57571 * 4 3 2 6 6 C 1.37883 * 119.99502 * 175.57443 * 4 3 2 7 7 N 1.31510 * 120.00021 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47292 * 269.99896 * 8 6 4 10 10 H 1.48505 * 109.47176 * 29.99824 * 8 6 4 11 11 H 1.48499 * 109.47469 * 149.99960 * 8 6 4 12 12 S 1.65602 * 119.99950 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40370 * 197.66246 * 12 2 1 14 14 O 1.42094 * 106.40452 * 330.57941 * 12 2 1 15 15 N 1.65597 * 107.21926 * 84.12226 * 12 2 1 16 16 C 1.46498 * 119.99973 * 64.83652 * 15 12 2 17 17 H 1.08995 * 110.27568 * 22.28994 * 16 15 12 18 18 C 1.53996 * 110.30719 * 260.09656 * 16 15 12 19 19 N 1.47903 * 107.05988 * 242.31031 * 18 16 15 20 20 C 1.48537 * 105.81786 * 334.67068 * 19 18 16 21 21 C 1.54595 * 110.30970 * 144.38335 * 16 15 12 22 22 H 1.08998 * 110.72828 * 22.51175 * 21 16 15 23 23 C 1.50704 * 110.72280 * 259.22954 * 21 16 15 24 24 C 1.38231 * 120.00100 * 299.72632 * 23 21 16 25 25 C 1.38239 * 120.00042 * 179.76875 * 24 23 21 26 26 C 1.38226 * 119.99870 * 0.50488 * 25 24 23 27 27 C 1.38241 * 120.00420 * 359.74649 * 26 25 24 28 28 C 1.38234 * 119.99742 * 120.00037 * 23 21 16 29 29 H 1.08998 * 109.47008 * 89.99589 * 1 2 3 30 30 H 1.08998 * 109.46882 * 209.99853 * 1 2 3 31 31 H 1.08995 * 109.46702 * 329.99573 * 1 2 3 32 32 H 1.09003 * 109.46538 * 324.22116 * 3 2 1 33 33 H 1.08999 * 109.47329 * 204.21928 * 3 2 1 34 34 H 0.97004 * 120.00217 * 180.02562 * 7 6 4 35 35 H 0.96995 * 119.99749 * 244.83320 * 15 12 2 36 36 H 1.08999 * 109.92087 * 1.66242 * 18 16 15 37 37 H 1.09000 * 109.91604 * 122.95839 * 18 16 15 38 38 H 1.00893 * 111.00183 * 95.18120 * 19 18 16 39 39 H 1.09001 * 110.66940 * 280.77291 * 20 19 18 40 40 H 1.09007 * 110.66921 * 157.64284 * 20 19 18 41 41 H 1.08005 * 119.99789 * 359.97438 * 24 23 21 42 42 H 1.08003 * 119.99615 * 180.23034 * 25 24 23 43 43 H 1.08004 * 120.00396 * 179.73233 * 26 25 24 44 44 H 1.07990 * 120.00340 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00340 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3247 1.7752 1.4136 5 1 1.8414 1.2470 2.2221 6 6 3.0582 2.9132 1.6748 7 7 3.6472 3.5562 0.6904 8 14 3.2165 3.5407 3.4271 9 1 2.1097 4.4879 3.7156 10 1 3.1473 2.3963 4.3709 11 1 4.5183 4.2369 3.5879 12 16 2.2930 -1.4342 -0.0006 13 8 3.6186 -1.1324 0.4131 14 8 1.4654 -2.3756 0.6685 15 7 2.3978 -1.9390 -1.5743 16 6 3.1616 -1.1530 -2.5464 17 1 3.8931 -0.5273 -2.0350 18 6 2.2137 -0.2856 -3.3953 19 7 2.3575 -0.7313 -4.7983 20 6 3.7151 -1.3260 -4.8970 21 6 3.8671 -2.0871 -3.5561 22 1 3.3659 -3.0540 -3.6025 23 6 5.3218 -2.2555 -3.2005 24 6 6.1558 -1.1539 -3.1615 25 6 7.4892 -1.3077 -2.8305 26 6 7.9908 -2.5645 -2.5488 27 6 7.1580 -3.6670 -2.5929 28 6 5.8234 -3.5125 -2.9187 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.6572 2.0002 -0.6009 33 1 3.1909 1.1148 -0.4216 34 1 4.1636 4.3566 0.8741 35 1 1.9535 -2.7551 -1.8524 36 1 1.1848 -0.4269 -3.0645 37 1 2.4936 0.7643 -3.3087 38 1 1.6482 -1.4078 -5.0373 39 1 4.4714 -0.5460 -4.9845 40 1 3.7727 -2.0154 -5.7395 41 1 5.7650 -0.1724 -3.3863 42 1 8.1399 -0.4464 -2.7965 43 1 9.0335 -2.6854 -2.2945 44 1 7.5500 -4.6490 -2.3732 45 1 5.1729 -4.3739 -2.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420457556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:30 Heat of formation + Delta-G solvation = -69.538339 kcal Electronic energy + Delta-G solvation = -28745.330602 eV Core-core repulsion = 24888.158279 eV Total energy + Delta-G solvation = -3857.172323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00840 -39.06674 -38.29138 -37.21675 -36.87540 -34.94180 -34.50203 -33.20101 -31.78276 -29.66474 -28.85410 -28.56526 -26.79423 -24.20145 -24.06622 -23.20283 -22.58064 -21.25165 -20.41177 -19.06552 -18.50178 -18.31589 -17.84680 -17.72936 -17.05007 -16.49106 -16.28787 -15.99408 -15.65587 -15.38841 -15.15180 -14.94326 -14.60633 -14.26197 -14.15208 -14.01107 -13.98209 -13.66430 -13.54293 -13.35824 -13.16040 -13.03915 -12.95726 -12.85166 -12.60358 -12.47767 -12.41968 -12.37639 -12.10000 -12.00021 -11.92704 -11.76628 -11.72977 -10.86964 -10.58509 -9.88191 -9.79740 -9.77801 -9.25892 -8.20704 -6.32387 -0.37218 0.44315 0.51573 1.37358 1.39832 1.49799 2.00928 2.39119 2.60216 2.82984 3.10674 3.22697 3.40534 3.57749 3.71523 3.96973 4.04758 4.07229 4.12667 4.15027 4.23342 4.30078 4.36735 4.45675 4.62006 4.66291 4.73149 4.75226 4.85260 4.95699 5.04758 5.09419 5.13820 5.15657 5.19977 5.21706 5.45131 5.56457 5.63708 5.64677 5.69539 5.71223 5.87705 6.10920 6.13661 6.15085 6.49729 6.76004 7.36568 8.86577 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.004439 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.924356 B = 6305.539122 C = 7113.641812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.000 6.000 3 C 0.276 3.724 4 C -0.554 4.554 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.279 1.279 12 S 2.795 3.205 13 O -1.010 7.010 14 O -1.013 7.013 15 N -1.103 6.103 16 C 0.128 3.872 17 H 0.070 0.930 18 C 0.032 3.968 19 N -0.667 5.667 20 C 0.056 3.944 21 C -0.079 4.079 22 H 0.114 0.886 23 C -0.082 4.082 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.127 4.127 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.425 0.575 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.351 0.649 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -13.599 -14.089 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.843 5.843 3 C 0.152 3.848 4 C -0.593 4.593 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.777 3.223 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.204 1.204 12 S 2.803 3.197 13 O -0.993 6.993 14 O -0.997 6.997 15 N -0.865 5.865 16 C 0.019 3.981 17 H 0.088 0.912 18 C -0.100 4.100 19 N -0.294 5.294 20 C -0.073 4.073 21 C -0.100 4.100 22 H 0.132 0.868 23 C -0.082 4.082 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.798 -13.050 -13.616 18.876 hybrid contribution -0.009 -0.142 1.390 1.398 sum 0.789 -13.192 -12.225 18.003 Atomic orbital electron populations 1.21575 0.77947 1.03518 1.02593 1.57447 1.15742 1.21779 1.89297 1.18591 0.90418 0.80079 0.95725 1.21852 1.32192 1.10396 0.94846 0.93087 1.25700 0.94729 0.96836 1.01211 1.69997 1.33802 1.19116 1.33041 0.85644 0.78062 0.78438 0.80109 1.18904 1.20092 1.20448 1.01285 0.72567 0.72255 0.73604 1.93576 1.39607 1.84879 1.81253 1.93503 1.69989 1.62892 1.73274 1.55762 1.65912 1.36651 1.28220 1.22232 0.92998 0.92543 0.90352 0.91156 1.23187 1.00057 0.99041 0.87706 1.62678 1.04568 1.41399 1.20759 1.23253 0.91546 0.97378 0.95168 1.22002 0.91767 1.00448 0.95817 0.86805 1.19757 0.94858 0.93738 0.99870 1.21190 0.94405 0.98724 1.00645 1.21409 0.95743 0.98434 0.99418 1.21458 1.01026 0.92621 1.00015 1.21474 0.93832 0.99789 0.99411 1.21344 0.96284 0.96976 0.99865 0.90588 0.90927 0.91079 0.95332 0.96398 0.92407 0.73847 0.89321 0.91287 0.83155 0.90510 0.87598 0.86503 0.85218 0.84227 0.83806 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.70 127.77 1.37 4.21 16 2 N -1.00 -40.47 3.23 -543.22 -1.75 -42.22 16 3 C 0.28 13.80 5.12 85.63 0.44 14.23 16 4 C -0.55 -31.43 9.38 25.60 0.24 -31.19 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.02 0.87 5.46 84.66 0.46 1.33 16 7 N -0.92 -54.03 13.29 21.45 0.28 -53.75 16 8 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 S 2.79 110.16 6.08 -56.49 -0.34 109.81 16 13 O -1.01 -50.29 16.28 -128.00 -2.08 -52.37 16 14 O -1.01 -41.69 16.86 -128.00 -2.16 -43.85 16 15 N -1.10 -30.10 5.47 -165.74 -0.91 -31.01 16 16 C 0.13 3.48 3.18 45.87 0.15 3.62 16 17 H 0.07 2.50 6.59 -2.39 -0.02 2.49 16 18 C 0.03 0.78 7.32 86.45 0.63 1.41 16 19 N -0.67 -12.63 7.51 -502.18 -3.77 -16.41 16 20 C 0.06 1.01 6.92 86.65 0.60 1.61 16 21 C -0.08 -1.62 2.99 -10.33 -0.03 -1.65 16 22 H 0.11 1.78 7.67 -2.39 -0.02 1.76 16 23 C -0.08 -2.02 4.92 -19.87 -0.10 -2.11 16 24 C -0.13 -3.62 8.19 22.27 0.18 -3.44 16 25 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 27 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 28 C -0.13 -2.83 9.69 22.27 0.22 -2.62 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.19 7.08 -2.39 -0.02 2.18 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.36 16 32 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 33 H 0.02 0.99 7.42 -2.39 -0.02 0.97 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.42 8.49 8.67 -96.75 -0.84 7.65 16 36 H 0.09 1.95 7.92 -2.39 -0.02 1.93 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.35 4.89 8.92 -89.70 -0.80 4.09 16 39 H 0.08 1.59 6.71 -2.39 -0.02 1.57 16 40 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.12 3.25 7.25 -2.91 -0.02 3.23 16 42 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.14 2.28 8.06 -2.92 -0.02 2.26 16 45 H 0.14 2.39 7.98 -2.91 -0.02 2.37 16 Total: -1.00 -75.18 380.71 -4.51 -79.69 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.63 Total: 26.28 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.83 Total: -23.17 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.15 Total: -143.39 kcal Atomic # 8 Polarization: -91.98 SS G_CDS: -4.24 Total: -96.22 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.34 Total: 109.81 kcal Total: -75.18 -4.51 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420457556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.149 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds