Wall clock time and date at job start Tue Mar 31 2020 23:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99869 * 2 1 4 4 C 1.50699 * 109.47415 * 274.99903 * 3 2 1 5 5 H 1.08002 * 119.99886 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99811 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99823 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46979 * 89.99797 * 8 6 4 10 10 H 1.48496 * 109.46826 * 210.00030 * 8 6 4 11 11 H 1.48506 * 109.46894 * 329.99948 * 8 6 4 12 12 S 1.65603 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.42095 * 106.39967 * 150.54466 * 12 2 1 14 14 O 1.42096 * 106.40484 * 17.62015 * 12 2 1 15 15 N 1.65603 * 107.21593 * 264.07839 * 12 2 1 16 16 C 1.46505 * 119.99807 * 65.32133 * 15 12 2 17 17 H 1.09000 * 109.24437 * 336.46318 * 16 15 12 18 18 C 1.52721 * 109.25150 * 95.92366 * 16 15 12 19 19 C 1.53324 * 108.38511 * 171.38610 * 18 16 15 20 20 C 1.52727 * 108.40917 * 290.08258 * 19 18 16 21 21 C 1.50731 * 110.54630 * 51.10835 * 20 19 18 22 22 C 1.38792 * 117.66368 * 162.56729 * 21 20 19 23 23 C 1.38613 * 120.48777 * 179.40392 * 22 21 20 24 24 N 1.39673 * 120.19402 * 180.02562 * 23 22 21 25 25 C 1.38937 * 119.61044 * 0.05045 * 23 22 21 26 26 C 1.37797 * 119.69356 * 0.11246 * 25 23 22 27 27 C 1.37729 * 122.57858 * 342.23684 * 21 20 19 28 28 H 1.08995 * 109.47296 * 265.21125 * 1 2 3 29 29 H 1.08996 * 109.47027 * 25.21566 * 1 2 3 30 30 H 1.08997 * 109.47327 * 145.21358 * 1 2 3 31 31 H 1.08998 * 109.47172 * 35.00400 * 3 2 1 32 32 H 1.09007 * 109.46930 * 154.99988 * 3 2 1 33 33 H 0.97002 * 120.00046 * 179.97438 * 7 6 4 34 34 H 0.96996 * 120.00088 * 245.32366 * 15 12 2 35 35 H 1.09005 * 109.68294 * 51.66678 * 18 16 15 36 36 H 1.09006 * 109.68429 * 291.11186 * 18 16 15 37 37 H 1.09000 * 109.68095 * 49.82397 * 19 18 16 38 38 H 1.09004 * 109.68355 * 170.33672 * 19 18 16 39 39 H 1.08994 * 109.25456 * 171.43077 * 20 19 18 40 40 H 1.09001 * 109.25329 * 290.85956 * 20 19 18 41 41 H 1.07999 * 119.75994 * 359.42645 * 22 21 20 42 42 H 0.97003 * 119.99679 * 180.02562 * 24 23 22 43 43 H 0.96998 * 119.99765 * 0.02562 * 24 23 22 44 44 H 1.07995 * 120.15964 * 180.09591 * 25 23 22 45 45 H 1.08002 * 119.67067 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 3.0007 2.9504 -1.6663 7 7 3.5034 3.6469 -0.6704 8 14 3.1785 3.5668 -3.4207 9 1 2.0182 4.4280 -3.7627 10 1 4.4321 4.3532 -3.5443 11 1 3.2267 2.4092 -4.3496 12 16 2.2930 -1.4342 -0.0006 13 8 3.5215 -1.1879 -0.6709 14 8 1.3685 -2.4311 -0.4137 15 7 2.6794 -1.7778 1.5726 16 6 1.6181 -2.0569 2.5433 17 1 0.6885 -1.6032 2.1997 18 6 1.4277 -3.5676 2.6608 19 6 0.4742 -3.8455 3.8289 20 6 1.1977 -3.5118 5.1319 21 6 1.7970 -2.1304 5.0654 22 6 2.1604 -1.5274 6.2615 23 6 2.7282 -0.2629 6.2675 24 7 3.0921 0.3379 7.4747 25 6 2.9328 0.4035 5.0657 26 6 2.5673 -0.1978 3.8809 27 6 1.9969 -1.4651 3.8761 28 1 -0.3633 -0.0858 1.0240 29 1 -0.3633 0.9297 -0.4378 30 1 -0.3634 -0.8440 -0.5863 31 1 1.6502 2.0042 0.5895 32 1 3.1858 1.1177 0.4343 33 1 3.9675 4.4802 -0.8470 34 1 3.6082 -1.7942 1.8514 35 1 2.3891 -4.0452 2.8501 36 1 0.9996 -3.9567 1.7369 37 1 -0.4152 -3.2228 3.7328 38 1 0.1878 -4.8972 3.8268 39 1 0.4887 -3.5576 5.9585 40 1 1.9912 -4.2401 5.2991 41 1 2.0000 -2.0473 7.1944 42 1 3.4889 1.2231 7.4757 43 1 2.9481 -0.1299 8.3121 44 1 3.3759 1.3884 5.0600 45 1 2.7260 0.3208 2.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440841320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:19 Heat of formation + Delta-G solvation = -61.046418 kcal Electronic energy + Delta-G solvation = -28502.133835 eV Core-core repulsion = 24645.329749 eV Total energy + Delta-G solvation = -3856.804086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16258 -37.23350 -36.47075 -35.46269 -35.09912 -34.37811 -33.65150 -32.40912 -30.62846 -28.65703 -27.78746 -27.61180 -25.02337 -23.37760 -22.45017 -22.25217 -21.95075 -19.60954 -18.85049 -17.35866 -17.06133 -16.86662 -16.57979 -16.34782 -15.89155 -15.36506 -15.00852 -14.70307 -14.29087 -14.14765 -13.68822 -13.44959 -13.36569 -13.27561 -13.14070 -12.87455 -12.35930 -12.30222 -12.21768 -12.12025 -11.64963 -11.54050 -11.46479 -11.30582 -11.14328 -11.04814 -10.99654 -10.73553 -10.64409 -10.51484 -10.39501 -10.26035 -9.99586 -9.73659 -9.22518 -8.64426 -8.42913 -8.03502 -7.48730 -6.04772 -4.08101 1.25939 1.49244 1.64723 3.33054 3.39392 3.45678 3.56850 3.76488 3.89273 4.20224 4.46943 4.64192 4.72814 4.90861 4.98584 5.07739 5.12406 5.21171 5.29124 5.30999 5.33871 5.54074 5.60301 5.67756 5.74589 5.76918 5.89918 5.96156 6.01987 6.06100 6.13631 6.21769 6.30866 6.37613 6.42623 6.54552 6.58593 6.82315 6.94339 7.17656 7.30850 7.43314 7.45577 7.64451 7.64524 7.93338 8.22753 8.94373 9.57029 11.03747 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.004014 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.361820 B = 6973.357568 C = 8522.471668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.997 5.997 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.780 3.220 13 O -0.965 6.965 14 O -0.997 6.997 15 N -1.127 6.127 16 C 0.210 3.790 17 H 0.087 0.913 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.081 4.081 21 C -0.020 4.020 22 C -0.209 4.209 23 C 0.216 3.784 24 N -0.881 5.881 25 C -0.196 4.196 26 C -0.050 4.050 27 C -0.145 4.145 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.395 0.605 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -11.086 17.318 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.840 5.840 3 C 0.137 3.863 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.787 3.213 13 O -0.949 6.949 14 O -0.981 6.981 15 N -0.884 5.884 16 C 0.103 3.897 17 H 0.105 0.895 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.118 4.118 21 C -0.021 4.021 22 C -0.232 4.232 23 C 0.112 3.888 24 N -0.420 5.420 25 C -0.219 4.219 26 C -0.069 4.069 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.133 0.867 42 H 0.225 0.775 43 H 0.222 0.778 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.624 -11.449 16.467 20.582 hybrid contribution 0.673 1.097 -0.027 1.287 sum -3.950 -10.351 16.440 19.825 Atomic orbital electron populations 1.21360 0.80176 1.03610 0.99922 1.57613 1.14229 1.23337 1.88826 1.19025 0.90796 0.78872 0.97626 1.21506 1.35908 1.06194 0.92997 0.92152 1.24919 0.95141 0.96520 0.97426 1.69914 1.37463 1.15326 1.30894 0.86524 0.77479 0.78828 0.84804 1.20652 1.21100 1.19683 1.01995 0.73367 0.73013 0.72883 1.93644 1.44993 1.85327 1.70935 1.93519 1.65222 1.58446 1.80891 1.56418 1.15137 1.87375 1.29510 1.19280 0.89547 0.94604 0.86281 0.89549 1.22097 1.00413 0.95702 0.99400 1.21525 0.98518 1.01600 0.93869 1.20525 0.99489 0.93371 0.98456 1.19300 0.96092 0.95022 0.91679 1.20423 1.09366 0.95576 0.97803 1.17713 0.92686 0.91937 0.86435 1.42453 1.72324 1.21841 1.05427 1.20598 1.08678 1.01408 0.91171 1.21077 0.94092 0.93687 0.98066 1.19444 1.06012 0.95747 0.93597 0.94411 0.90279 0.91724 0.94698 0.94752 0.92757 0.75429 0.91114 0.90046 0.91338 0.91219 0.90920 0.90627 0.86710 0.77457 0.77766 0.86080 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.36 59.85 0.62 2.27 16 2 N -1.00 -20.49 3.23 -123.05 -0.40 -20.88 16 3 C 0.26 6.39 5.05 -5.20 -0.03 6.36 16 4 C -0.53 -14.78 9.38 -34.44 -0.32 -15.10 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 S 2.78 55.09 5.97 -107.50 -0.64 54.45 16 13 O -0.97 -23.28 17.33 -57.17 -0.99 -24.27 16 14 O -1.00 -20.35 16.23 -57.17 -0.93 -21.28 16 15 N -1.13 -17.37 4.63 -6.02 -0.03 -17.39 16 16 C 0.21 2.85 2.67 -69.24 -0.19 2.66 16 17 H 0.09 1.18 6.99 -51.93 -0.36 0.82 16 18 C -0.14 -1.62 5.57 -26.71 -0.15 -1.77 16 19 C -0.12 -1.10 5.97 -26.70 -0.16 -1.26 16 20 C -0.08 -0.74 5.67 -28.01 -0.16 -0.89 16 21 C -0.02 -0.22 5.74 -104.59 -0.60 -0.82 16 22 C -0.21 -2.26 9.46 -39.24 -0.37 -2.63 16 23 C 0.22 2.43 6.75 -83.89 -0.57 1.86 16 24 N -0.88 -7.06 9.09 32.36 0.29 -6.77 16 25 C -0.20 -2.53 9.90 -39.48 -0.39 -2.92 16 26 C -0.05 -0.71 9.13 -39.47 -0.36 -1.07 16 27 C -0.14 -1.90 5.49 -104.55 -0.57 -2.47 16 28 H 0.04 0.54 7.41 -51.93 -0.38 0.15 16 29 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 30 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.03 0.89 7.77 -51.93 -0.40 0.49 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.41 5.86 8.75 -34.47 -0.30 5.56 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.00 8.05 -52.49 -0.42 0.58 16 42 H 0.40 2.70 8.85 -40.82 -0.36 2.34 16 43 H 0.39 2.35 8.84 -40.82 -0.36 1.99 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.13 2.01 7.60 -52.49 -0.40 1.61 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -34.09 377.47 -11.32 -45.41 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.69 Total: 7.53 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.34 Total: -14.13 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: 0.61 Total: -70.30 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.92 Total: -45.55 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 55.09 SS G_CDS: -0.64 Total: 54.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.09 -11.32 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440841320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.638 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds