Wall clock time and date at job start Tue Mar 31 2020 23:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99869 * 2 1 4 4 C 1.50699 * 109.47415 * 274.99903 * 3 2 1 5 5 H 1.08002 * 119.99886 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99811 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99823 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46979 * 89.99797 * 8 6 4 10 10 H 1.48496 * 109.46826 * 210.00030 * 8 6 4 11 11 H 1.48506 * 109.46894 * 329.99948 * 8 6 4 12 12 S 1.65603 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.42095 * 106.39967 * 150.54466 * 12 2 1 14 14 O 1.42096 * 106.40484 * 17.62015 * 12 2 1 15 15 N 1.65603 * 107.21593 * 264.07839 * 12 2 1 16 16 C 1.46505 * 119.99807 * 65.32133 * 15 12 2 17 17 H 1.09000 * 109.24437 * 336.46318 * 16 15 12 18 18 C 1.52721 * 109.25150 * 95.92366 * 16 15 12 19 19 C 1.53324 * 108.38511 * 171.38610 * 18 16 15 20 20 C 1.52727 * 108.40917 * 290.08258 * 19 18 16 21 21 C 1.50731 * 110.54630 * 51.10835 * 20 19 18 22 22 C 1.38792 * 117.66368 * 162.56729 * 21 20 19 23 23 C 1.38613 * 120.48777 * 179.40392 * 22 21 20 24 24 N 1.39673 * 120.19402 * 180.02562 * 23 22 21 25 25 C 1.38937 * 119.61044 * 0.05045 * 23 22 21 26 26 C 1.37797 * 119.69356 * 0.11246 * 25 23 22 27 27 C 1.37729 * 122.57858 * 342.23684 * 21 20 19 28 28 H 1.08995 * 109.47296 * 265.21125 * 1 2 3 29 29 H 1.08996 * 109.47027 * 25.21566 * 1 2 3 30 30 H 1.08997 * 109.47327 * 145.21358 * 1 2 3 31 31 H 1.08998 * 109.47172 * 35.00400 * 3 2 1 32 32 H 1.09007 * 109.46930 * 154.99988 * 3 2 1 33 33 H 0.97002 * 120.00046 * 179.97438 * 7 6 4 34 34 H 0.96996 * 120.00088 * 245.32366 * 15 12 2 35 35 H 1.09005 * 109.68294 * 51.66678 * 18 16 15 36 36 H 1.09006 * 109.68429 * 291.11186 * 18 16 15 37 37 H 1.09000 * 109.68095 * 49.82397 * 19 18 16 38 38 H 1.09004 * 109.68355 * 170.33672 * 19 18 16 39 39 H 1.08994 * 109.25456 * 171.43077 * 20 19 18 40 40 H 1.09001 * 109.25329 * 290.85956 * 20 19 18 41 41 H 1.07999 * 119.75994 * 359.42645 * 22 21 20 42 42 H 0.97003 * 119.99679 * 180.02562 * 24 23 22 43 43 H 0.96998 * 119.99765 * 0.02562 * 24 23 22 44 44 H 1.07995 * 120.15964 * 180.09591 * 25 23 22 45 45 H 1.08002 * 119.67067 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 3.0007 2.9504 -1.6663 7 7 3.5034 3.6469 -0.6704 8 14 3.1785 3.5668 -3.4207 9 1 2.0182 4.4280 -3.7627 10 1 4.4321 4.3532 -3.5443 11 1 3.2267 2.4092 -4.3496 12 16 2.2930 -1.4342 -0.0006 13 8 3.5215 -1.1879 -0.6709 14 8 1.3685 -2.4311 -0.4137 15 7 2.6794 -1.7778 1.5726 16 6 1.6181 -2.0569 2.5433 17 1 0.6885 -1.6032 2.1997 18 6 1.4277 -3.5676 2.6608 19 6 0.4742 -3.8455 3.8289 20 6 1.1977 -3.5118 5.1319 21 6 1.7970 -2.1304 5.0654 22 6 2.1604 -1.5274 6.2615 23 6 2.7282 -0.2629 6.2675 24 7 3.0921 0.3379 7.4747 25 6 2.9328 0.4035 5.0657 26 6 2.5673 -0.1978 3.8809 27 6 1.9969 -1.4651 3.8761 28 1 -0.3633 -0.0858 1.0240 29 1 -0.3633 0.9297 -0.4378 30 1 -0.3634 -0.8440 -0.5863 31 1 1.6502 2.0042 0.5895 32 1 3.1858 1.1177 0.4343 33 1 3.9675 4.4802 -0.8470 34 1 3.6082 -1.7942 1.8514 35 1 2.3891 -4.0452 2.8501 36 1 0.9996 -3.9567 1.7369 37 1 -0.4152 -3.2228 3.7328 38 1 0.1878 -4.8972 3.8268 39 1 0.4887 -3.5576 5.9585 40 1 1.9912 -4.2401 5.2991 41 1 2.0000 -2.0473 7.1944 42 1 3.4889 1.2231 7.4757 43 1 2.9481 -0.1299 8.3121 44 1 3.3759 1.3884 5.0600 45 1 2.7260 0.3208 2.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440841320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:18 Heat of formation + Delta-G solvation = -85.939855 kcal Electronic energy + Delta-G solvation = -28503.213296 eV Core-core repulsion = 24645.329749 eV Total energy + Delta-G solvation = -3857.883546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07995 -38.38237 -37.95464 -37.21547 -36.83273 -35.40886 -34.50274 -34.47685 -31.60942 -29.70423 -29.57051 -28.51697 -26.77359 -24.31003 -24.19868 -23.33265 -22.88100 -20.66681 -20.17849 -19.02289 -18.42099 -18.28293 -17.87657 -17.66810 -17.20417 -16.72166 -16.33546 -16.00952 -15.54717 -15.17633 -14.99167 -14.89727 -14.57025 -14.35541 -14.21598 -14.05578 -13.94741 -13.79334 -13.36672 -13.30725 -13.13439 -13.08582 -13.01152 -12.91443 -12.69130 -12.52979 -12.45580 -12.36768 -11.99249 -11.83109 -11.75150 -11.60346 -11.33780 -11.14286 -10.59708 -10.39853 -9.78490 -9.54565 -8.32511 -8.20253 -6.31744 -0.30698 0.55883 0.68305 1.38331 1.40736 1.51510 2.05338 2.40657 2.64407 2.96163 3.06085 3.10554 3.50338 3.72327 3.81302 4.07743 4.08693 4.13747 4.19102 4.27622 4.36128 4.43166 4.69464 4.71510 4.75529 4.81059 4.87023 4.92128 5.04338 5.10991 5.12852 5.16663 5.21625 5.23644 5.34508 5.45530 5.47823 5.52218 5.64488 5.69047 5.83463 5.89570 6.05084 6.09835 6.18496 6.64915 6.76173 7.05431 7.36941 8.87107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013246 B = 0.004014 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.361820 B = 6973.357568 C = 8522.471668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.003 6.003 3 C 0.276 3.724 4 C -0.549 4.549 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.796 3.204 13 O -1.013 7.013 14 O -1.002 7.002 15 N -1.114 6.114 16 C 0.205 3.795 17 H 0.082 0.918 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.079 4.079 21 C -0.018 4.018 22 C -0.209 4.209 23 C 0.219 3.781 24 N -0.869 5.869 25 C -0.216 4.216 26 C -0.070 4.070 27 C -0.158 4.158 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.267 0.733 34 H 0.418 0.582 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.143 0.857 42 H 0.404 0.596 43 H 0.408 0.592 44 H 0.118 0.882 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 -12.352 19.284 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.845 5.845 3 C 0.153 3.847 4 C -0.588 4.588 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.200 1.200 12 S 2.804 3.196 13 O -0.997 6.997 14 O -0.986 6.986 15 N -0.874 5.874 16 C 0.099 3.901 17 H 0.100 0.900 18 C -0.176 4.176 19 C -0.151 4.151 20 C -0.115 4.115 21 C -0.019 4.019 22 C -0.232 4.232 23 C 0.113 3.887 24 N -0.408 5.408 25 C -0.239 4.239 26 C -0.089 4.089 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.161 0.839 42 H 0.233 0.767 43 H 0.238 0.762 44 H 0.136 0.864 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.669 -12.714 18.461 23.121 hybrid contribution 0.982 1.463 -0.505 1.833 sum -4.687 -11.251 17.956 21.702 Atomic orbital electron populations 1.21579 0.78187 1.03753 1.02097 1.57497 1.15612 1.22024 1.89363 1.18560 0.90172 0.80225 0.95763 1.21843 1.36189 1.06584 0.94202 0.93090 1.25717 0.94790 0.96736 1.01373 1.70005 1.37880 1.15715 1.32700 0.85603 0.78149 0.78282 0.79976 1.19001 1.20331 1.20030 1.01289 0.72223 0.72627 0.73451 1.93573 1.47105 1.85925 1.73132 1.93504 1.65181 1.58252 1.81637 1.56035 1.16137 1.86852 1.28403 1.19520 0.88474 0.96139 0.86016 0.89993 1.22095 1.01400 0.93909 1.00188 1.21539 0.97766 1.02995 0.92820 1.20598 1.00234 0.91823 0.98887 1.19620 0.95176 0.96055 0.91052 1.20740 1.08435 0.95287 0.98710 1.17796 0.92036 0.92181 0.86708 1.42435 1.71304 1.22097 1.05002 1.20644 1.09732 1.01750 0.91776 1.20964 0.95828 0.94566 0.97538 1.19372 1.07265 0.95556 0.93971 0.91331 0.90756 0.90827 0.95454 0.96805 0.92409 0.74717 0.90656 0.91293 0.91337 0.89026 0.88580 0.89273 0.83878 0.76731 0.76211 0.86359 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.07 10.36 127.77 1.32 4.39 16 2 N -1.00 -42.48 3.23 -543.23 -1.75 -44.23 16 3 C 0.28 14.24 5.05 85.63 0.43 14.67 16 4 C -0.55 -31.67 9.38 25.60 0.24 -31.43 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.92 -54.56 13.29 21.45 0.28 -54.28 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 9 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 S 2.80 114.15 5.97 -56.49 -0.34 113.81 16 13 O -1.01 -50.99 17.33 -128.00 -2.22 -53.20 16 14 O -1.00 -41.14 16.23 -128.00 -2.08 -43.21 16 15 N -1.11 -35.30 4.63 -172.95 -0.80 -36.11 16 16 C 0.20 5.49 2.67 44.14 0.12 5.61 16 17 H 0.08 2.23 6.99 -2.39 -0.02 2.21 16 18 C -0.14 -3.04 5.57 30.61 0.17 -2.87 16 19 C -0.11 -1.79 5.97 30.61 0.18 -1.61 16 20 C -0.08 -1.12 5.67 29.77 0.17 -0.96 16 21 C -0.02 -0.36 5.74 -19.84 -0.11 -0.47 16 22 C -0.21 -3.90 9.46 22.49 0.21 -3.69 16 23 C 0.22 4.53 6.75 38.15 0.26 4.79 16 24 N -0.87 -11.95 9.09 -51.54 -0.47 -12.42 16 25 C -0.22 -5.65 9.90 22.33 0.22 -5.42 16 26 C -0.07 -2.04 9.13 22.34 0.20 -1.84 16 27 C -0.16 -4.07 5.49 -19.82 -0.11 -4.17 16 28 H 0.07 1.92 7.41 -2.39 -0.02 1.90 16 29 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 30 H 0.07 2.39 7.15 -2.39 -0.02 2.37 16 31 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 32 H 0.01 0.77 7.77 -2.38 -0.02 0.75 16 33 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.42 12.43 8.75 -96.75 -0.85 11.58 16 35 H 0.07 1.59 8.10 -2.38 -0.02 1.57 16 36 H 0.07 1.70 7.90 -2.38 -0.02 1.68 16 37 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.99 8.13 -2.39 -0.02 0.97 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.14 1.85 8.05 -2.91 -0.02 1.82 16 42 H 0.40 4.79 8.85 -92.71 -0.82 3.97 16 43 H 0.41 3.59 8.84 -92.71 -0.82 2.77 16 44 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.10 3.46 7.60 -2.91 -0.02 3.44 16 Total: -1.00 -74.42 377.47 -3.02 -77.44 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -1.45 Total: 26.63 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.77 Total: -21.77 kcal Atomic # 7 Polarization: -144.30 SS G_CDS: -2.74 Total: -147.04 kcal Atomic # 8 Polarization: -92.12 SS G_CDS: -4.30 Total: -96.42 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 114.15 SS G_CDS: -0.34 Total: 113.81 kcal Total: -74.42 -3.02 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440841320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.496 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds