Wall clock time and date at job start Tue Mar 31 2020 23:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00159 * 2 1 4 4 C 1.50691 * 109.47420 * 275.00552 * 3 2 1 5 5 H 1.08001 * 119.99966 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99981 * 180.02562 * 4 3 2 7 7 N 1.31503 * 120.00022 * 359.71744 * 6 4 3 8 8 Si 1.86802 * 119.99771 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47216 * 269.72100 * 8 6 4 10 10 H 1.48498 * 109.47556 * 29.72247 * 8 6 4 11 11 H 1.48506 * 109.46910 * 149.72203 * 8 6 4 12 12 S 1.65604 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40454 * 23.53711 * 12 2 1 14 14 O 1.42107 * 106.40340 * 156.45916 * 12 2 1 15 15 N 1.65601 * 107.21755 * 269.99503 * 12 2 1 16 16 C 1.46505 * 119.99729 * 65.43882 * 15 12 2 17 17 H 1.08999 * 109.24882 * 6.09327 * 16 15 12 18 18 C 1.52730 * 109.25074 * 246.67119 * 16 15 12 19 19 C 1.53333 * 108.38161 * 188.64308 * 18 16 15 20 20 C 1.52729 * 108.36130 * 69.94239 * 19 18 16 21 21 C 1.50641 * 110.58505 * 308.87547 * 20 19 18 22 22 C 1.38792 * 117.67840 * 197.52322 * 21 20 19 23 23 C 1.38601 * 120.49329 * 180.33529 * 22 21 20 24 24 N 1.39674 * 120.19688 * 179.97438 * 23 22 21 25 25 C 1.38940 * 119.61124 * 359.96783 * 23 22 21 26 26 C 1.37797 * 119.69138 * 359.89677 * 25 23 22 27 27 C 1.37736 * 122.56638 * 17.63366 * 21 20 19 28 28 H 1.09005 * 109.47285 * 89.99621 * 1 2 3 29 29 H 1.08999 * 109.47305 * 209.99511 * 1 2 3 30 30 H 1.08997 * 109.46870 * 329.99910 * 1 2 3 31 31 H 1.09004 * 109.46714 * 155.00033 * 3 2 1 32 32 H 1.09002 * 109.46663 * 35.00465 * 3 2 1 33 33 H 0.97002 * 120.00485 * 0.28342 * 7 6 4 34 34 H 0.96996 * 120.00560 * 245.44249 * 15 12 2 35 35 H 1.09003 * 109.68003 * 308.36375 * 18 16 15 36 36 H 1.08998 * 109.68170 * 68.92364 * 18 16 15 37 37 H 1.08999 * 109.68455 * 310.22395 * 19 18 16 38 38 H 1.09001 * 109.71213 * 189.68156 * 19 18 16 39 39 H 1.08997 * 109.25792 * 188.58385 * 20 19 18 40 40 H 1.09007 * 109.25319 * 69.15673 * 20 19 18 41 41 H 1.07997 * 119.75193 * 0.30940 * 22 21 20 42 42 H 0.97004 * 120.00117 * 359.97438 * 24 23 22 43 43 H 0.96998 * 120.00110 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.15495 * 179.97438 * 25 23 22 45 45 H 1.07997 * 119.67185 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9288 1.1936 -2.2331 6 6 3.0006 2.9505 -1.6662 7 7 3.4990 3.6494 -0.6700 8 14 3.1795 3.5662 -3.4208 9 1 4.4380 3.0370 -4.0052 10 1 2.0242 3.1005 -4.2291 11 1 3.2187 5.0507 -3.4228 12 16 2.2929 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8594 1.5810 16 6 1.3953 -2.1882 2.4367 17 1 0.4874 -2.2029 1.8337 18 6 1.2588 -1.1253 3.5249 19 6 0.2031 -1.5970 4.5319 20 6 0.7752 -2.7802 5.3100 21 6 1.3186 -3.8215 4.3668 22 6 1.5304 -5.0981 4.8685 23 6 2.0351 -6.0992 4.0537 24 7 2.2463 -7.3817 4.5652 25 6 2.3296 -5.8197 2.7249 26 6 2.1151 -4.5515 2.2304 27 6 1.6077 -3.5486 3.0481 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 3.1858 1.1176 0.4343 32 1 1.6502 2.0043 0.5895 33 1 3.4065 3.3295 0.2410 34 1 3.4383 -1.8907 1.9409 35 1 2.2153 -0.9928 4.0307 36 1 0.9449 -0.1815 3.0790 37 1 -0.6973 -1.9071 4.0016 38 1 -0.0369 -0.7864 5.2199 39 1 -0.0117 -3.2235 5.9202 40 1 1.5777 -2.4293 5.9590 41 1 1.3005 -5.3128 5.9017 42 1 2.0400 -7.5737 5.4933 43 1 2.5993 -8.0803 3.9923 44 1 2.7236 -6.5931 2.0822 45 1 2.3437 -4.3347 1.1975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440841321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:22 Heat of formation + Delta-G solvation = -63.664901 kcal Electronic energy + Delta-G solvation = -28317.067125 eV Core-core repulsion = 24460.149493 eV Total energy + Delta-G solvation = -3856.917632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27685 -37.34608 -36.60001 -35.65256 -35.20714 -34.47320 -33.77754 -32.60134 -30.76011 -28.76752 -27.77935 -27.45868 -24.82087 -23.49422 -22.53296 -22.45004 -22.07882 -19.76428 -18.99681 -17.57163 -17.24973 -17.05383 -16.73842 -16.57353 -15.95714 -15.58936 -14.95922 -14.79835 -14.19504 -13.99398 -13.80397 -13.69085 -13.51150 -13.31906 -13.22457 -12.98389 -12.56274 -12.44469 -12.31209 -12.19612 -11.79715 -11.64789 -11.52292 -11.43462 -11.25506 -11.08113 -11.06288 -10.82811 -10.64156 -10.56771 -10.48687 -10.31370 -10.07869 -9.37067 -9.31857 -8.76917 -8.36900 -7.94439 -7.60922 -6.38184 -4.09532 1.13592 1.36008 1.53112 3.44873 3.47668 3.50910 3.63767 3.66017 3.77624 4.10632 4.54493 4.56172 4.62296 4.81839 4.86684 4.96337 4.97713 5.11180 5.14864 5.21378 5.34941 5.44762 5.48213 5.50735 5.63965 5.67544 5.80470 5.84408 5.93856 5.96766 6.00713 6.08588 6.19277 6.23572 6.36063 6.42390 6.43060 6.68553 6.80846 6.88305 7.11339 7.24610 7.30422 7.49183 7.51829 8.02649 8.46243 8.81388 9.59208 11.00017 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.003180 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.898034 B = 8804.104763 C = 9466.230191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.992 5.992 3 C 0.249 3.751 4 C -0.607 4.607 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 1.072 2.928 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.284 1.284 12 S 2.779 3.221 13 O -0.994 6.994 14 O -0.964 6.964 15 N -1.127 6.127 16 C 0.206 3.794 17 H 0.092 0.908 18 C -0.133 4.133 19 C -0.117 4.117 20 C -0.082 4.082 21 C -0.018 4.018 22 C -0.207 4.207 23 C 0.216 3.784 24 N -0.881 5.881 25 C -0.201 4.201 26 C -0.050 4.050 27 C -0.143 4.143 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.396 0.604 43 H 0.397 0.603 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -17.373 15.311 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.835 5.835 3 C 0.127 3.873 4 C -0.647 4.647 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.547 5.547 8 Si 0.900 3.100 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.209 1.209 12 S 2.787 3.213 13 O -0.977 6.977 14 O -0.948 6.948 15 N -0.884 5.884 16 C 0.098 3.902 17 H 0.110 0.890 18 C -0.172 4.172 19 C -0.156 4.156 20 C -0.119 4.119 21 C -0.019 4.019 22 C -0.230 4.230 23 C 0.112 3.888 24 N -0.420 5.420 25 C -0.223 4.223 26 C -0.069 4.069 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.754 -16.562 13.500 22.128 hybrid contribution -0.221 -1.540 1.513 2.171 sum -5.975 -18.102 15.014 24.265 Atomic orbital electron populations 1.21252 0.79983 1.01031 1.01678 1.57482 1.14189 1.22961 1.88849 1.19107 0.90449 0.79547 0.98231 1.22333 1.40094 1.09562 0.92685 0.92755 1.25799 0.93024 0.93600 1.05930 1.70789 1.43462 1.40085 1.00361 0.83513 0.76472 0.76099 0.73960 1.21227 1.21411 1.20938 1.02032 0.73404 0.72927 0.72950 1.93550 1.67568 1.59937 1.76680 1.93645 1.40649 1.84811 1.75693 1.56421 1.14617 1.85261 1.32101 1.19345 0.88309 0.90858 0.91662 0.89035 1.22023 1.00120 0.98566 0.96533 1.21534 0.98499 0.97452 0.98074 1.20520 1.00296 0.94359 0.96738 1.19318 0.95944 0.93719 0.92938 1.20449 1.10153 0.92857 0.99520 1.17685 0.93176 0.85420 0.92510 1.42442 1.75503 1.09398 1.14688 1.20539 1.09575 0.98002 0.94199 1.20967 0.94768 0.91668 0.99498 1.19532 1.06051 0.95636 0.93478 0.92980 0.92962 0.91478 0.95550 0.95737 0.92303 0.75389 0.90830 0.90458 0.91332 0.90999 0.90799 0.90461 0.86547 0.77658 0.77543 0.86303 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.33 59.85 0.62 2.45 16 2 N -0.99 -20.53 3.23 -123.05 -0.40 -20.93 16 3 C 0.25 6.18 4.43 -5.20 -0.02 6.16 16 4 C -0.61 -17.38 9.38 -34.44 -0.32 -17.70 16 5 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 7 N -0.91 -27.39 13.65 55.43 0.76 -26.64 16 8 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 S 2.78 55.45 5.95 -107.50 -0.64 54.81 16 13 O -0.99 -20.73 16.67 -57.17 -0.95 -21.68 16 14 O -0.96 -23.41 17.11 -57.17 -0.98 -24.39 16 15 N -1.13 -17.01 4.52 -6.02 -0.03 -17.04 16 16 C 0.21 2.70 2.82 -69.24 -0.20 2.51 16 17 H 0.09 1.24 6.21 -51.93 -0.32 0.91 16 18 C -0.13 -1.50 5.57 -26.70 -0.15 -1.64 16 19 C -0.12 -1.05 5.98 -26.70 -0.16 -1.21 16 20 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 21 C -0.02 -0.19 5.73 -104.63 -0.60 -0.79 16 22 C -0.21 -2.09 9.46 -39.24 -0.37 -2.46 16 23 C 0.22 2.20 6.75 -83.89 -0.57 1.64 16 24 N -0.88 -6.03 9.09 32.36 0.29 -5.74 16 25 C -0.20 -2.33 9.90 -39.48 -0.39 -2.72 16 26 C -0.05 -0.67 9.20 -39.47 -0.36 -1.03 16 27 C -0.14 -1.82 5.56 -104.55 -0.58 -2.40 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.74 6.46 -51.93 -0.34 0.41 16 30 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 31 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 32 H 0.02 0.60 7.83 -51.93 -0.41 0.20 16 33 H 0.27 7.84 7.22 -40.82 -0.29 7.55 16 34 H 0.41 5.66 8.96 -34.48 -0.31 5.35 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.12 0.94 8.05 -52.49 -0.42 0.51 16 42 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 43 H 0.40 2.13 8.85 -40.82 -0.36 1.77 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.76 7.61 -52.49 -0.40 1.36 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -35.73 375.89 -11.32 -47.05 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.60 Total: 5.65 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.36 Total: -17.56 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: 0.63 Total: -70.34 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.93 Total: -46.07 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.64 Total: 54.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.73 -11.32 -47.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440841321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.616 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds