Wall clock time and date at job start Tue Mar 31 2020 22:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47220 * 317.38629 * 3 2 1 5 5 C 1.36969 * 120.00025 * 94.35668 * 4 3 2 6 6 H 1.07999 * 120.00407 * 151.84888 * 5 4 3 7 7 C 1.38982 * 120.00047 * 331.57866 * 5 4 3 8 8 N 1.31413 * 119.99834 * 4.42509 * 7 5 4 9 9 Si 1.86800 * 120.00326 * 184.42790 * 7 5 4 10 10 H 1.48500 * 109.46881 * 89.99838 * 9 7 5 11 11 H 1.48494 * 109.47593 * 209.99834 * 9 7 5 12 12 H 1.48499 * 109.46998 * 330.00206 * 9 7 5 13 13 C 1.34778 * 120.00321 * 274.35854 * 4 3 2 14 14 O 1.21646 * 119.99535 * 355.99714 * 13 4 3 15 15 C 1.47183 * 120.00111 * 175.99336 * 13 4 3 16 16 C 1.38046 * 126.82298 * 299.49155 * 15 13 4 17 17 N 1.34154 * 107.88309 * 179.97438 * 16 15 13 18 18 C 1.46505 * 125.15719 * 180.02562 * 17 16 15 19 19 N 1.39772 * 109.69178 * 0.02562 * 17 16 15 20 20 C 1.31391 * 109.09184 * 359.74177 * 19 17 16 21 21 C 1.48216 * 126.51277 * 180.26660 * 20 19 17 22 22 C 1.39355 * 120.15254 * 172.63372 * 21 20 19 23 23 C 1.37995 * 119.92540 * 179.72361 * 22 21 20 24 24 C 1.38397 * 120.24391 * 0.55101 * 23 22 21 25 25 C 1.38188 * 120.31285 * 359.72526 * 24 23 22 26 26 C 1.38577 * 120.06768 * 359.97438 * 25 24 23 27 27 O 1.35845 * 120.12044 * 179.97438 * 26 25 24 28 28 C 1.42902 * 116.99956 * 0.02564 * 27 26 25 29 29 H 4.40643 * 5.51317 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.46833 * 197.38840 * 3 2 1 31 31 H 1.08998 * 109.47241 * 77.38800 * 3 2 1 32 32 H 0.97002 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.08005 * 126.05667 * 359.93878 * 16 15 13 34 34 H 1.09005 * 109.46620 * 90.00071 * 18 17 16 35 35 H 1.08995 * 109.47102 * 210.00074 * 18 17 16 36 36 H 1.09000 * 109.46676 * 330.00858 * 18 17 16 37 37 H 1.08000 * 120.04018 * 359.97438 * 22 21 20 38 38 H 1.08000 * 119.87614 * 180.27747 * 23 22 21 39 39 H 1.07993 * 119.84322 * 179.74223 * 24 23 22 40 40 H 1.07996 * 119.96648 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.46946 * 179.97438 * 28 27 26 42 42 H 1.08999 * 109.46807 * 299.99494 * 28 27 26 43 43 H 1.08999 * 109.47130 * 59.99739 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0156 0.9351 5 6 3.4487 -2.2693 0.4815 6 1 4.1958 -2.8576 0.9935 7 6 2.8016 -2.7867 -0.6344 8 7 1.9525 -2.0416 -1.3058 9 14 3.1387 -4.5412 -1.1797 10 1 2.1846 -5.4602 -0.5085 11 1 2.9716 -4.6430 -2.6517 12 1 4.5280 -4.9155 -0.8122 13 6 3.2758 -0.7170 2.2418 14 8 3.0670 0.4159 2.6327 15 6 3.6821 -1.7615 3.1958 16 6 3.0079 -2.9328 3.4770 17 7 3.7142 -3.6034 4.3995 18 6 3.3404 -4.9001 4.9699 19 7 4.8608 -2.8776 4.7342 20 6 4.8864 -1.7670 4.0326 21 6 5.9325 -0.7180 4.0796 22 6 5.9089 0.3355 3.1677 23 6 6.8819 1.3126 3.2194 24 6 7.8885 1.2446 4.1667 25 6 7.9248 0.2013 5.0722 26 6 6.9507 -0.7837 5.0359 27 8 6.9857 -1.8100 5.9252 28 6 8.0558 -1.8117 6.8722 29 1 -1.0498 -0.0001 0.0003 30 1 3.0089 0.9815 0.3071 31 1 3.0095 -0.2236 -1.0028 32 1 1.5012 -2.4026 -2.0849 33 1 2.0765 -3.2524 3.0333 34 1 3.7683 -5.6998 4.3652 35 1 3.7205 -4.9720 5.9889 36 1 2.2545 -4.9932 4.9796 37 1 5.1277 0.3893 2.4239 38 1 6.8603 2.1312 2.5152 39 1 8.6491 2.0106 4.1987 40 1 8.7126 0.1540 5.8093 41 1 7.9651 -2.6827 7.5213 42 1 9.0084 -1.8494 6.3439 43 1 8.0097 -0.9041 7.4741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:41 Heat of formation + Delta-G solvation = 115.553886 kcal Electronic energy + Delta-G solvation = -29567.316351 eV Core-core repulsion = 25582.726277 eV Total energy + Delta-G solvation = -3984.590073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57484 -39.59369 -38.27552 -37.03733 -35.02824 -33.24426 -31.85405 -31.39836 -30.61125 -29.99179 -29.38315 -27.25423 -26.70566 -25.87065 -24.57857 -22.84746 -22.00897 -21.00080 -19.70585 -19.07747 -17.96464 -17.57802 -16.88465 -16.17583 -15.92144 -15.60690 -15.55434 -15.14985 -14.91779 -14.49558 -14.32219 -14.18051 -13.89525 -13.42842 -13.29876 -12.89660 -12.79977 -12.46139 -12.33231 -12.18099 -12.07130 -11.87465 -11.64663 -11.38449 -11.23221 -11.15161 -10.91399 -10.72740 -10.60654 -10.48467 -10.05164 -9.54397 -9.43850 -9.20311 -8.62729 -8.55451 -8.32115 -7.94905 -7.82533 -7.43542 -6.33687 -4.01905 1.30564 1.74583 2.47407 2.91199 3.03967 3.16276 3.18379 3.21273 3.48425 3.88829 3.95608 4.13623 4.28234 4.36029 4.70970 4.90075 4.97386 5.05006 5.15284 5.18218 5.18980 5.33710 5.35316 5.40881 5.48904 5.55186 5.57045 5.65928 5.74888 5.98293 6.03820 6.21547 6.31843 6.43994 6.56977 6.68073 6.75154 6.83662 7.02704 7.08599 7.17114 7.25253 7.41548 7.48456 7.63944 7.74266 8.23138 8.38742 9.02737 9.05813 9.45308 9.85259 10.63991 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.004524 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.773599 B = 6187.793615 C = 7269.492614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.086 4.086 3 C 0.240 3.760 4 N -0.434 5.434 5 C -0.328 4.328 6 H 0.096 0.904 7 C 0.041 3.959 8 N -0.862 5.862 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.539 3.461 14 O -0.593 6.593 15 C -0.222 4.222 16 C 0.095 3.905 17 N -0.380 5.380 18 C 0.106 3.894 19 N -0.271 5.271 20 C 0.142 3.858 21 C -0.041 4.041 22 C -0.042 4.042 23 C -0.160 4.160 24 C -0.077 4.077 25 C -0.223 4.223 26 C 0.146 3.854 27 O -0.290 6.290 28 C 0.027 3.973 29 H 0.195 0.805 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.270 0.730 33 H 0.178 0.822 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -1.714 9.679 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.088 4.088 3 C 0.118 3.882 4 N -0.151 5.151 5 C -0.456 4.456 6 H 0.113 0.887 7 C -0.165 4.165 8 N -0.499 5.499 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.328 3.672 14 O -0.479 6.479 15 C -0.236 4.236 16 C -0.050 4.050 17 N -0.162 5.162 18 C -0.036 4.036 19 N -0.092 5.092 20 C -0.025 4.025 21 C -0.044 4.044 22 C -0.062 4.062 23 C -0.178 4.178 24 C -0.096 4.096 25 C -0.241 4.241 26 C 0.099 3.901 27 O -0.202 6.202 28 C -0.069 4.069 29 H 0.212 0.788 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.196 0.804 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.040 -2.259 10.605 13.499 hybrid contribution -0.525 -0.740 -0.958 1.319 sum 7.515 -2.999 9.648 12.592 Atomic orbital electron populations 1.24135 0.95290 1.05998 1.05167 1.23135 0.94301 0.95263 0.96095 1.18176 0.84116 0.90267 0.95621 1.43584 1.55777 1.11469 1.04263 1.19553 1.21308 0.91626 1.13122 0.88668 1.25390 0.94989 0.99105 0.96974 1.69939 1.26311 1.35479 1.18199 0.86067 0.78837 0.82730 0.77962 1.20428 1.20796 1.19524 1.17179 0.81565 0.86834 0.81619 1.90660 1.56836 1.21952 1.78490 1.21116 0.98179 0.98584 1.05765 1.22677 0.98523 0.91673 0.92109 1.48000 1.17765 1.17493 1.32964 1.21763 1.01050 0.80960 0.99828 1.77339 1.03159 1.05912 1.22800 1.21450 0.93548 0.92665 0.94851 1.17103 0.93725 0.95801 0.97747 1.21640 0.97403 0.90673 0.96456 1.20983 0.95934 1.00191 1.00702 1.20956 0.97705 0.96806 0.94112 1.21030 1.01240 0.97628 1.04243 1.19028 0.93792 0.87578 0.89691 1.86309 1.47954 1.43391 1.42548 1.23010 0.89610 1.02686 0.91569 0.78781 0.91859 0.86868 0.91925 0.80448 0.91071 0.89729 0.89787 0.83187 0.85616 0.86056 0.85668 0.88658 0.93039 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.47 19.25 29.55 0.57 -5.90 16 2 C -0.09 -2.10 11.29 -37.12 -0.42 -2.52 16 3 C 0.24 5.75 5.12 -6.83 -0.03 5.72 16 4 N -0.43 -10.71 2.59 -119.24 -0.31 -11.02 16 5 C -0.33 -8.10 8.43 -14.98 -0.13 -8.22 16 6 H 0.10 2.38 6.95 -52.49 -0.36 2.01 16 7 C 0.04 0.98 5.35 -17.46 -0.09 0.89 16 8 N -0.86 -21.60 8.72 55.50 0.48 -21.12 16 9 Si 0.92 19.22 29.56 -169.99 -5.02 14.20 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.54 13.24 5.39 -12.63 -0.07 13.17 16 14 O -0.59 -15.59 15.08 5.24 0.08 -15.51 16 15 C -0.22 -5.01 4.75 -102.94 -0.49 -5.50 16 16 C 0.10 1.88 10.58 -16.61 -0.18 1.70 16 17 N -0.38 -6.75 3.95 -67.62 -0.27 -7.02 16 18 C 0.11 1.25 11.39 59.85 0.68 1.93 16 19 N -0.27 -5.47 11.04 34.57 0.38 -5.09 16 20 C 0.14 3.07 7.14 -80.56 -0.58 2.49 16 21 C -0.04 -0.82 5.89 -104.78 -0.62 -1.44 16 22 C -0.04 -0.82 9.18 -39.26 -0.36 -1.18 16 23 C -0.16 -2.52 10.03 -39.61 -0.40 -2.92 16 24 C -0.08 -1.04 10.03 -39.54 -0.40 -1.44 16 25 C -0.22 -3.13 9.03 -39.47 -0.36 -3.49 16 26 C 0.15 2.52 6.69 -38.86 -0.26 2.26 16 27 O -0.29 -4.73 8.87 -19.25 -0.17 -4.90 16 28 C 0.03 0.29 9.81 101.05 0.99 1.28 16 29 H 0.20 3.61 7.80 -54.10 -0.42 3.18 16 30 H 0.06 1.45 7.50 -51.93 -0.39 1.06 16 31 H 0.11 2.75 6.55 -51.93 -0.34 2.41 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.18 3.21 8.06 -52.48 -0.42 2.79 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 37 H 0.15 3.28 4.29 -52.49 -0.23 3.06 16 38 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 43 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.34 370.24 -6.34 -38.67 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.96 Total: 9.37 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.13 Total: -3.16 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.29 Total: -44.25 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.09 Total: -20.41 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.34 -6.34 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.227 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds