Wall clock time and date at job start Tue Mar 31 2020 22:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47220 * 317.38629 * 3 2 1 5 5 C 1.36969 * 120.00025 * 94.35668 * 4 3 2 6 6 H 1.07999 * 120.00407 * 151.84888 * 5 4 3 7 7 C 1.38982 * 120.00047 * 331.57866 * 5 4 3 8 8 N 1.31413 * 119.99834 * 4.42509 * 7 5 4 9 9 Si 1.86800 * 120.00326 * 184.42790 * 7 5 4 10 10 H 1.48500 * 109.46881 * 89.99838 * 9 7 5 11 11 H 1.48494 * 109.47593 * 209.99834 * 9 7 5 12 12 H 1.48499 * 109.46998 * 330.00206 * 9 7 5 13 13 C 1.34778 * 120.00321 * 274.35854 * 4 3 2 14 14 O 1.21646 * 119.99535 * 355.99714 * 13 4 3 15 15 C 1.47183 * 120.00111 * 175.99336 * 13 4 3 16 16 C 1.38046 * 126.82298 * 299.49155 * 15 13 4 17 17 N 1.34154 * 107.88309 * 179.97438 * 16 15 13 18 18 C 1.46505 * 125.15719 * 180.02562 * 17 16 15 19 19 N 1.39772 * 109.69178 * 0.02562 * 17 16 15 20 20 C 1.31391 * 109.09184 * 359.74177 * 19 17 16 21 21 C 1.48216 * 126.51277 * 180.26660 * 20 19 17 22 22 C 1.39355 * 120.15254 * 172.63372 * 21 20 19 23 23 C 1.37995 * 119.92540 * 179.72361 * 22 21 20 24 24 C 1.38397 * 120.24391 * 0.55101 * 23 22 21 25 25 C 1.38188 * 120.31285 * 359.72526 * 24 23 22 26 26 C 1.38577 * 120.06768 * 359.97438 * 25 24 23 27 27 O 1.35845 * 120.12044 * 179.97438 * 26 25 24 28 28 C 1.42902 * 116.99956 * 0.02564 * 27 26 25 29 29 H 4.40643 * 5.51317 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.46833 * 197.38840 * 3 2 1 31 31 H 1.08998 * 109.47241 * 77.38800 * 3 2 1 32 32 H 0.97002 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.08005 * 126.05667 * 359.93878 * 16 15 13 34 34 H 1.09005 * 109.46620 * 90.00071 * 18 17 16 35 35 H 1.08995 * 109.47102 * 210.00074 * 18 17 16 36 36 H 1.09000 * 109.46676 * 330.00858 * 18 17 16 37 37 H 1.08000 * 120.04018 * 359.97438 * 22 21 20 38 38 H 1.08000 * 119.87614 * 180.27747 * 23 22 21 39 39 H 1.07993 * 119.84322 * 179.74223 * 24 23 22 40 40 H 1.07996 * 119.96648 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.46946 * 179.97438 * 28 27 26 42 42 H 1.08999 * 109.46807 * 299.99494 * 28 27 26 43 43 H 1.08999 * 109.47130 * 59.99739 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0156 0.9351 5 6 3.4487 -2.2693 0.4815 6 1 4.1958 -2.8576 0.9935 7 6 2.8016 -2.7867 -0.6344 8 7 1.9525 -2.0416 -1.3058 9 14 3.1387 -4.5412 -1.1797 10 1 2.1846 -5.4602 -0.5085 11 1 2.9716 -4.6430 -2.6517 12 1 4.5280 -4.9155 -0.8122 13 6 3.2758 -0.7170 2.2418 14 8 3.0670 0.4159 2.6327 15 6 3.6821 -1.7615 3.1958 16 6 3.0079 -2.9328 3.4770 17 7 3.7142 -3.6034 4.3995 18 6 3.3404 -4.9001 4.9699 19 7 4.8608 -2.8776 4.7342 20 6 4.8864 -1.7670 4.0326 21 6 5.9325 -0.7180 4.0796 22 6 5.9089 0.3355 3.1677 23 6 6.8819 1.3126 3.2194 24 6 7.8885 1.2446 4.1667 25 6 7.9248 0.2013 5.0722 26 6 6.9507 -0.7837 5.0359 27 8 6.9857 -1.8100 5.9252 28 6 8.0558 -1.8117 6.8722 29 1 -1.0498 -0.0001 0.0003 30 1 3.0089 0.9815 0.3071 31 1 3.0095 -0.2236 -1.0028 32 1 1.5012 -2.4026 -2.0849 33 1 2.0765 -3.2524 3.0333 34 1 3.7683 -5.6998 4.3652 35 1 3.7205 -4.9720 5.9889 36 1 2.2545 -4.9932 4.9796 37 1 5.1277 0.3893 2.4239 38 1 6.8603 2.1312 2.5152 39 1 8.6491 2.0106 4.1987 40 1 8.7126 0.1540 5.8093 41 1 7.9651 -2.6827 7.5213 42 1 9.0084 -1.8494 6.3439 43 1 8.0097 -0.9041 7.4741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490963595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:40 Heat of formation + Delta-G solvation = 96.743625 kcal Electronic energy + Delta-G solvation = -29568.132025 eV Core-core repulsion = 25582.726277 eV Total energy + Delta-G solvation = -3985.405748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04098 -40.80472 -40.09584 -38.21931 -36.91865 -34.56656 -33.70908 -33.25681 -31.84990 -31.37320 -30.75746 -28.44862 -28.13582 -27.32683 -26.35499 -24.23415 -23.25970 -22.47499 -21.12935 -20.79453 -19.65417 -18.86788 -18.51765 -17.96620 -17.33497 -16.88159 -16.62989 -16.45133 -16.29782 -16.07739 -16.05244 -15.79963 -15.27765 -14.85795 -14.62312 -14.39078 -13.96757 -13.94604 -13.81203 -13.60638 -13.45284 -13.20588 -13.14789 -12.95996 -12.77522 -12.55230 -12.35683 -12.16196 -11.96047 -11.93254 -11.50596 -11.29680 -11.08682 -10.84682 -10.50140 -10.41419 -9.74405 -9.67999 -9.35395 -8.79936 -8.20403 -5.95055 0.00720 0.51094 0.92916 1.39336 1.45560 1.55293 1.61499 1.63852 2.12317 2.17197 2.34613 2.43839 2.50027 2.95951 3.13148 3.23203 3.54007 3.68508 3.97615 3.99993 4.05544 4.21610 4.31372 4.43331 4.45309 4.46544 4.49425 4.56618 4.68073 4.68615 4.74171 4.76447 4.85107 4.92712 5.04780 5.11341 5.33062 5.36691 5.46083 5.48255 5.54240 5.71816 5.84900 5.89599 6.10795 6.47388 6.53326 6.73417 7.13731 7.20443 7.57070 7.97893 8.76451 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.004524 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.773599 B = 6187.793615 C = 7269.492614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.132 4.132 3 C 0.244 3.756 4 N -0.441 5.441 5 C -0.338 4.338 6 H 0.086 0.914 7 C 0.007 3.993 8 N -0.880 5.880 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.541 3.459 14 O -0.623 6.623 15 C -0.267 4.267 16 C 0.103 3.897 17 N -0.371 5.371 18 C 0.093 3.907 19 N -0.281 5.281 20 C 0.129 3.871 21 C -0.083 4.083 22 C -0.071 4.071 23 C -0.167 4.167 24 C -0.060 4.060 25 C -0.213 4.213 26 C 0.141 3.859 27 O -0.316 6.316 28 C 0.016 3.984 29 H 0.233 0.767 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.270 0.730 33 H 0.192 0.808 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 -2.940 11.135 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.134 4.134 3 C 0.122 3.878 4 N -0.157 5.157 5 C -0.466 4.466 6 H 0.104 0.896 7 C -0.196 4.196 8 N -0.517 5.517 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.331 3.669 14 O -0.512 6.512 15 C -0.281 4.281 16 C -0.044 4.044 17 N -0.152 5.152 18 C -0.046 4.046 19 N -0.102 5.102 20 C -0.038 4.038 21 C -0.086 4.086 22 C -0.091 4.091 23 C -0.185 4.185 24 C -0.079 4.079 25 C -0.231 4.231 26 C 0.093 3.907 27 O -0.229 6.229 28 C -0.078 4.078 29 H 0.249 0.751 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.208 0.792 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.159 0.841 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.294 -3.509 12.084 15.643 hybrid contribution -0.872 -0.359 -1.326 1.627 sum 8.421 -3.868 10.758 14.199 Atomic orbital electron populations 1.25031 0.96257 1.04105 1.03258 1.23441 0.95004 0.97058 0.97898 1.18040 0.84670 0.90098 0.94979 1.43703 1.55881 1.11670 1.04491 1.19551 1.21673 0.91748 1.13582 0.89575 1.26060 0.94632 1.02331 0.96586 1.70071 1.26726 1.36644 1.18237 0.85111 0.78549 0.78428 0.77405 1.19541 1.20614 1.19684 1.17462 0.80724 0.86935 0.81804 1.90598 1.58181 1.23356 1.79043 1.21135 1.00145 0.99702 1.07135 1.22804 0.98570 0.90993 0.92063 1.48460 1.16487 1.18449 1.31833 1.22268 1.03231 0.78508 1.00639 1.77263 1.04196 1.05807 1.22953 1.21793 0.93807 0.93499 0.94658 1.17346 0.95192 0.96241 0.99807 1.21479 0.98242 0.92632 0.96726 1.21236 0.95772 0.99645 1.01879 1.21439 0.97163 0.97194 0.92084 1.21489 1.00851 0.96221 1.04547 1.19137 0.93634 0.88574 0.89316 1.86263 1.50179 1.43292 1.43138 1.23364 0.88902 1.04418 0.91103 0.75073 0.92210 0.87888 0.91984 0.79165 0.89437 0.88198 0.86913 0.86789 0.84059 0.81492 0.81720 0.86980 0.91343 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.01 19.25 74.32 1.43 -10.58 16 2 C -0.13 -6.64 11.29 31.12 0.35 -6.29 16 3 C 0.24 12.40 5.12 84.57 0.43 12.84 16 4 N -0.44 -23.00 2.59 -649.41 -1.68 -24.68 16 5 C -0.34 -17.31 8.43 84.07 0.71 -16.60 16 6 H 0.09 4.50 6.95 -2.91 -0.02 4.48 16 7 C 0.01 0.35 5.35 84.93 0.45 0.80 16 8 N -0.88 -44.74 8.72 21.67 0.19 -44.55 16 9 Si 0.98 39.47 29.56 68.60 2.03 41.50 16 10 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 13 C 0.54 28.30 5.39 86.59 0.47 28.77 16 14 O -0.62 -35.19 15.08 -4.18 -0.06 -35.26 16 15 C -0.27 -12.66 4.75 -18.78 -0.09 -12.75 16 16 C 0.10 4.15 10.58 84.29 0.89 5.04 16 17 N -0.37 -13.05 3.95 -367.85 -1.45 -14.50 16 18 C 0.09 2.00 11.39 127.77 1.46 3.45 16 19 N -0.28 -11.49 11.04 -44.54 -0.49 -11.98 16 20 C 0.13 5.82 7.14 44.06 0.31 6.14 16 21 C -0.08 -3.48 5.89 -19.97 -0.12 -3.59 16 22 C -0.07 -2.93 9.18 22.48 0.21 -2.73 16 23 C -0.17 -5.29 10.03 22.25 0.22 -5.07 16 24 C -0.06 -1.48 10.03 22.30 0.22 -1.25 16 25 C -0.21 -5.41 9.03 22.34 0.20 -5.21 16 26 C 0.14 4.79 6.69 22.74 0.15 4.94 16 27 O -0.32 -10.00 8.87 -91.81 -0.81 -10.82 16 28 C 0.02 0.30 9.81 113.37 1.11 1.42 16 29 H 0.23 8.11 7.80 -4.43 -0.03 8.08 16 30 H 0.06 2.97 7.50 -2.39 -0.02 2.96 16 31 H 0.10 5.32 6.55 -2.39 -0.02 5.30 16 32 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.79 8.13 -2.39 -0.02 1.77 16 37 H 0.11 5.50 4.29 -2.91 -0.01 5.48 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.17 2.81 6.30 -2.91 -0.02 2.79 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 43 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 Total: -1.00 -74.89 370.24 7.18 -67.71 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 1.05 Total: 33.23 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 8.42 Total: -0.66 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -3.44 Total: -95.71 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.88 Total: -46.07 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -74.89 7.18 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.451 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds