Wall clock time and date at job start Tue Mar 31 2020 23:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 120.00111 * 2 1 4 4 C 1.50696 * 109.46889 * 270.00059 * 3 2 1 5 5 C 1.38395 * 120.00307 * 94.99868 * 4 3 2 6 6 N 1.32127 * 119.99563 * 179.71799 * 5 4 3 7 7 C 1.32148 * 120.00214 * 0.02562 * 6 5 4 8 8 C 1.38345 * 120.00590 * 359.97438 * 7 6 5 9 9 N 1.32129 * 119.99931 * 274.72028 * 4 3 2 10 10 C 1.34775 * 119.99740 * 179.97438 * 2 1 3 11 11 O 1.21725 * 119.99690 * 179.97438 * 10 2 1 12 12 C 1.46256 * 120.00352 * 0.02562 * 10 2 1 13 13 C 1.35017 * 119.99975 * 179.97438 * 12 10 2 14 14 C 1.46965 * 119.99962 * 180.02562 * 13 12 10 15 15 C 1.40021 * 120.09850 * 359.72048 * 14 13 12 16 16 C 1.37604 * 119.89497 * 179.69601 * 15 14 13 17 17 C 1.39170 * 120.09866 * 0.60686 * 16 15 14 18 18 O 1.35578 * 119.89544 * 179.69374 * 17 16 15 19 19 C 1.34782 * 116.99806 * 174.42349 * 18 17 16 20 20 H 1.07999 * 120.00252 * 5.05750 * 19 18 17 21 21 C 1.38720 * 120.00103 * 185.05330 * 19 18 17 22 22 N 1.31508 * 120.00376 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99694 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47032 * 89.99500 * 23 21 19 25 25 H 1.48497 * 109.46864 * 209.99795 * 23 21 19 26 26 H 1.48497 * 109.46949 * 329.99555 * 23 21 19 27 27 C 1.39178 * 120.20789 * 359.67277 * 17 16 15 28 28 C 1.37594 * 120.09840 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.46809 * 90.00190 * 1 2 3 30 30 H 1.08997 * 109.47064 * 210.00227 * 1 2 3 31 31 H 1.08999 * 109.47162 * 329.99998 * 1 2 3 32 32 H 1.08998 * 109.46930 * 150.00069 * 3 2 1 33 33 H 1.09002 * 109.46769 * 29.99539 * 3 2 1 34 34 H 1.07991 * 119.99821 * 359.69987 * 5 4 3 35 35 H 1.08005 * 119.99632 * 180.02562 * 7 6 5 36 36 H 1.07991 * 120.00205 * 180.02562 * 8 7 6 37 37 H 1.07996 * 120.00143 * 0.02562 * 12 10 2 38 38 H 1.08002 * 120.00642 * 359.97438 * 13 12 10 39 39 H 1.08003 * 120.05257 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.95005 * 180.27618 * 16 15 14 41 41 H 0.96995 * 119.99798 * 180.02562 * 22 21 19 42 42 H 1.08003 * 119.94876 * 179.97438 * 27 17 16 43 43 H 1.08001 * 120.05307 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.5793 2.5857 -2.0384 6 7 1.8027 2.9713 -3.2823 7 6 2.8559 2.5144 -3.9367 8 6 3.7251 1.6327 -3.3193 9 7 3.5020 1.2473 -2.0750 10 6 2.1389 -1.1672 0.0005 11 8 3.3561 -1.1672 0.0001 12 6 1.4076 -2.4338 0.0005 13 6 2.0827 -3.6031 0.0005 14 6 1.3479 -4.8759 0.0000 15 6 -0.0523 -4.8783 0.0053 16 6 -0.7361 -6.0724 -0.0016 17 6 -0.0380 -7.2764 -0.0011 18 8 -0.7159 -8.4505 -0.0016 19 6 0.0133 -9.5780 -0.1178 20 1 1.0920 -9.5254 -0.1228 21 6 -0.6216 -10.8062 -0.2309 22 7 0.0899 -11.9063 -0.3448 23 14 -2.4875 -10.8972 -0.2228 24 1 -2.9945 -10.7864 -1.6141 25 1 -2.9172 -12.1942 0.3589 26 1 -3.0338 -9.7834 0.5933 27 6 1.3537 -7.2789 -0.0005 28 6 2.0459 -6.0898 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.1500 1.1383 0.5138 33 1 1.6084 2.0284 0.5138 34 1 0.7182 2.9585 -1.5039 35 1 3.0387 2.8300 -4.9533 36 1 4.5860 1.2597 -3.8540 37 1 0.3277 -2.4339 -0.0003 38 1 3.1628 -3.6032 0.0001 39 1 -0.5948 -3.9444 0.0095 40 1 -1.8161 -6.0753 -0.0019 41 1 -0.3542 -12.7650 -0.4242 42 1 1.8912 -8.2157 0.0003 43 1 3.1259 -6.0926 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491841534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:17 Heat of formation + Delta-G solvation = 42.112728 kcal Electronic energy + Delta-G solvation = -26877.988520 eV Core-core repulsion = 22890.213799 eV Total energy + Delta-G solvation = -3987.774721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44913 -39.77472 -39.29837 -37.10362 -35.93097 -34.53307 -33.35935 -32.59219 -32.27324 -30.54544 -28.95594 -27.94231 -26.56860 -25.58749 -24.85162 -23.79650 -22.49979 -22.17275 -20.34938 -18.77127 -18.10873 -17.79239 -17.51624 -17.34059 -17.11526 -16.62120 -16.28149 -15.15965 -15.02931 -14.95066 -14.79466 -14.11583 -13.99669 -13.98763 -13.83777 -13.49651 -13.19961 -12.98029 -12.87456 -12.80905 -12.59581 -12.41726 -12.28155 -11.89306 -11.83056 -11.66052 -11.50455 -11.20096 -11.03121 -10.76911 -10.28734 -9.94694 -9.65493 -9.57356 -9.54899 -9.49185 -8.95274 -8.83991 -8.48321 -7.25472 -6.61188 -4.25001 0.36315 0.80839 0.97928 2.02103 2.45832 2.82700 3.10967 3.14882 3.27979 3.44792 3.48183 3.72278 3.89729 4.07902 4.11049 4.40200 4.42595 4.56343 4.61775 4.82221 4.85938 4.91075 4.93014 5.02879 5.07850 5.10974 5.24062 5.37484 5.40264 5.45034 5.56912 5.59656 5.92681 5.97355 6.01325 6.17849 6.28629 6.44150 6.51650 6.66302 6.90868 6.93815 7.07725 7.13843 7.28792 7.40568 7.46959 7.61844 7.83204 8.24873 8.72047 9.32166 10.45040 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.001804 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.074023 B =15514.529328 C =15635.401657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.618 5.618 3 C 0.170 3.830 4 C 0.062 3.938 5 C 0.058 3.942 6 N -0.440 5.440 7 C 0.045 3.955 8 C 0.052 3.948 9 N -0.410 5.410 10 C 0.555 3.445 11 O -0.534 6.534 12 C -0.280 4.280 13 C 0.036 3.964 14 C -0.189 4.189 15 C -0.045 4.045 16 C -0.199 4.199 17 C 0.173 3.827 18 O -0.202 6.202 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.867 5.867 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.229 4.229 28 C -0.037 4.037 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.283 0.717 42 H 0.138 0.862 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 26.962 -1.799 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.045 3.955 4 C -0.080 4.080 5 C -0.103 4.103 6 N -0.155 5.155 7 C -0.115 4.115 8 C -0.108 4.108 9 N -0.125 5.125 10 C 0.348 3.652 11 O -0.412 6.412 12 C -0.301 4.301 13 C 0.017 3.983 14 C -0.190 4.190 15 C -0.064 4.064 16 C -0.219 4.219 17 C 0.119 3.881 18 O -0.105 6.105 19 C -0.467 4.467 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.502 5.502 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.248 4.248 28 C -0.055 4.055 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.230 26.601 -1.786 26.689 hybrid contribution -0.745 -0.260 -0.264 0.832 sum 0.485 26.341 -2.050 26.425 Atomic orbital electron populations 1.21875 0.79200 1.03586 1.01861 1.47658 1.06824 1.05116 1.75659 1.20168 0.99690 0.85895 0.89712 1.22803 0.91794 0.94437 0.98939 1.23606 0.99376 0.95434 0.91868 1.68452 1.17833 1.21495 1.07694 1.23807 0.91227 0.95175 1.01252 1.23899 1.00075 0.94998 0.91850 1.68450 1.17344 1.19140 1.07565 1.18453 0.87269 0.83979 0.75460 1.90817 1.13543 1.87291 1.49503 1.22552 1.00016 0.91414 1.16091 1.22325 0.99440 0.90909 0.85666 1.18525 0.93066 0.92100 1.15315 1.20863 0.92967 0.96575 0.95948 1.20141 0.99595 0.89953 1.12172 1.19361 0.90725 0.86205 0.91832 1.83505 1.36781 1.12371 1.77846 1.20877 0.92868 0.81391 1.51529 0.87190 1.24545 1.00674 0.93578 0.95163 1.69615 1.36882 0.98288 1.45436 0.86154 0.83052 0.78213 0.79392 1.19640 1.20512 1.18207 1.21224 0.93915 0.99045 1.10662 1.21048 0.98860 0.91264 0.94327 0.92926 0.90056 0.91028 0.87758 0.88497 0.81588 0.81346 0.81316 0.85683 0.85783 0.86368 0.86118 0.90650 0.84488 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.19 59.85 0.61 1.12 16 2 N -0.62 -6.24 2.86 -184.67 -0.53 -6.76 16 3 C 0.17 1.48 5.78 -5.20 -0.03 1.45 16 4 C 0.06 0.61 6.37 -82.41 -0.52 0.09 16 5 C 0.06 0.48 10.86 -17.37 -0.19 0.29 16 6 N -0.44 -4.12 10.50 -13.06 -0.14 -4.26 16 7 C 0.05 0.36 11.22 -17.38 -0.20 0.16 16 8 C 0.05 0.46 11.23 -17.37 -0.19 0.27 16 9 N -0.41 -4.86 10.42 -9.29 -0.10 -4.96 16 10 C 0.56 7.68 7.60 -13.04 -0.10 7.58 16 11 O -0.53 -9.19 15.81 5.17 0.08 -9.11 16 12 C -0.28 -3.71 8.61 -37.51 -0.32 -4.03 16 13 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 14 C -0.19 -3.09 5.87 -105.02 -0.62 -3.71 16 15 C -0.05 -0.72 9.40 -39.14 -0.37 -1.09 16 16 C -0.20 -3.66 9.97 -39.47 -0.39 -4.06 16 17 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 18 O -0.20 -5.03 8.57 0.71 0.01 -5.03 16 19 C -0.39 -10.47 9.94 30.91 0.31 -10.16 16 20 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 21 C 0.07 1.76 5.50 -17.51 -0.10 1.66 16 22 N -0.87 -23.88 13.96 55.48 0.77 -23.10 16 23 Si 0.91 20.54 28.62 -169.99 -4.86 15.67 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.26 -5.85 7.11 56.52 0.40 -5.44 16 27 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 28 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.52 6.09 -51.93 -0.32 0.20 16 31 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 32 H 0.10 1.10 7.42 -51.93 -0.39 0.72 16 33 H 0.10 0.45 7.80 -51.93 -0.41 0.05 16 34 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.39 4.21 -52.49 -0.22 1.17 16 38 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 39 H 0.12 1.49 6.16 -52.48 -0.32 1.16 16 40 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.14 2.92 5.62 -52.48 -0.29 2.63 16 43 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -33.18 374.50 -7.29 -40.47 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.71 Total: 4.25 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.47 Total: -12.81 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.01 Total: -39.09 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.18 -7.29 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491841534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.581 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds