Wall clock time and date at job start Tue Mar 31 2020 22:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47177 * 2 1 4 4 C 1.46505 * 120.00145 * 275.00203 * 3 2 1 5 5 C 1.50700 * 109.46978 * 275.00016 * 4 3 2 6 6 H 1.08002 * 119.99992 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00052 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46847 * 90.00495 * 9 7 5 11 11 H 1.48504 * 109.47359 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47148 * 330.00468 * 9 7 5 13 13 S 1.65604 * 119.99739 * 95.00287 * 3 2 1 14 14 O 1.42095 * 106.40208 * 336.45720 * 13 3 2 15 15 O 1.42103 * 106.39797 * 203.53712 * 13 3 2 16 16 N 1.65598 * 107.22003 * 90.00154 * 13 3 2 17 17 C 1.47421 * 125.64972 * 90.01643 * 16 13 3 18 18 C 1.54917 * 104.83002 * 155.84033 * 17 16 13 19 19 C 1.55151 * 101.58025 * 37.01304 * 18 17 16 20 20 C 1.47021 * 125.64577 * 269.98380 * 16 13 3 21 21 H 1.08996 * 109.88310 * 300.50874 * 20 16 13 22 22 C 1.50705 * 109.88447 * 61.67670 * 20 16 13 23 23 C 1.38224 * 119.61661 * 204.73133 * 22 20 16 24 24 C 1.38626 * 119.16040 * 179.70771 * 23 22 20 25 25 C 1.38670 * 118.41838 * 0.55122 * 24 23 22 26 26 C 1.38176 * 119.16606 * 359.72890 * 25 24 23 27 27 N 1.31850 * 119.61861 * 24.99453 * 22 20 16 28 28 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46798 * 299.99858 * 1 2 3 30 30 H 1.09000 * 109.47021 * 59.99605 * 1 2 3 31 31 H 1.08999 * 109.46637 * 240.00028 * 2 1 3 32 32 H 1.09000 * 109.47021 * 120.00394 * 2 1 3 33 33 H 1.08995 * 109.47149 * 34.99872 * 4 3 2 34 34 H 1.08996 * 109.46848 * 155.00112 * 4 3 2 35 35 H 0.97002 * 120.00001 * 179.97438 * 8 7 5 36 36 H 1.09002 * 110.36865 * 37.00526 * 17 16 13 37 37 H 1.09001 * 110.37117 * 274.67844 * 17 16 13 38 38 H 1.08998 * 111.00193 * 155.08783 * 18 17 16 39 39 H 1.09004 * 111.00194 * 278.93638 * 18 17 16 40 40 H 1.09000 * 110.72429 * 82.86540 * 19 18 17 41 41 H 1.09003 * 110.71831 * 206.13662 * 19 18 17 42 42 H 1.08007 * 120.42048 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.79240 * 180.30044 * 24 23 22 44 44 H 1.08001 * 120.41805 * 179.71017 * 25 24 23 45 45 H 1.08004 * 119.62158 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1720 1.1110 -1.3840 7 6 3.8525 2.3606 -3.0848 8 7 3.0275 3.1856 -3.6920 9 14 5.5094 1.9646 -3.8511 10 1 5.3745 0.7811 -4.7378 11 1 5.9778 3.1280 -4.6464 12 1 6.4931 1.6699 -2.7784 13 16 2.4123 2.1201 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5185 1.1999 16 7 4.0145 1.8136 1.7137 17 6 5.1424 2.6503 1.2653 18 6 6.2916 2.3293 2.2532 19 6 6.0835 0.8101 2.4900 20 6 4.5477 0.6623 2.4565 21 1 4.1531 0.6617 3.4725 22 6 4.1713 -0.6181 1.7566 23 6 4.0962 -1.7946 2.4784 24 6 3.7432 -2.9658 1.8263 25 6 3.4888 -2.9118 0.4641 26 6 3.5895 -1.7000 -0.1922 27 7 3.9224 -0.6042 0.4619 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3618 1.8098 -1.9453 34 1 2.0922 3.1802 -1.0755 35 1 3.2794 3.5881 -4.5378 36 1 4.8774 3.7062 1.3218 37 1 5.4310 2.3847 0.2483 38 1 7.2631 2.5244 1.7990 39 1 6.1766 2.8889 3.1815 40 1 6.5444 0.2286 1.6917 41 1 6.4783 0.5137 3.4618 42 1 4.3058 -1.8005 3.5379 43 1 3.6718 -3.8989 2.3654 44 1 3.2158 -3.8057 -0.0770 45 1 3.3927 -1.6495 -1.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558564900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:55 Heat of formation + Delta-G solvation = -13.565509 kcal Electronic energy + Delta-G solvation = -30510.627160 eV Core-core repulsion = 26655.882001 eV Total energy + Delta-G solvation = -3854.745159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.40623 -37.91405 -36.51949 -35.81379 -35.08336 -32.59763 -32.26354 -31.85141 -30.55095 -29.76949 -28.02502 -26.41861 -23.52666 -23.42549 -22.86715 -21.76595 -21.33567 -20.69556 -18.39381 -17.19770 -17.13519 -16.54140 -16.12364 -15.91729 -15.54403 -15.45500 -14.86806 -14.39814 -14.10949 -13.85078 -13.52230 -13.33047 -13.18018 -13.00088 -12.76533 -12.57117 -12.29108 -11.95337 -11.84772 -11.83212 -11.55517 -11.42825 -11.24151 -11.21026 -11.10922 -10.95243 -10.87053 -10.80548 -10.58912 -10.36990 -10.28369 -9.92552 -9.53709 -9.50621 -9.03284 -8.86097 -8.46091 -8.33897 -7.77721 -5.94997 -3.97450 1.21704 1.43392 1.46954 3.31279 3.39241 3.41466 3.58724 3.97645 4.23287 4.40948 4.49120 4.68242 4.77691 4.88411 5.00182 5.16282 5.19825 5.26046 5.27774 5.38970 5.51801 5.56220 5.67082 5.75451 5.85296 5.87682 5.88935 5.94537 6.00470 6.06800 6.14570 6.20883 6.27453 6.30971 6.40141 6.56107 6.65844 6.74660 6.77331 6.84352 6.94046 7.51439 7.66358 7.86598 8.06892 8.28297 8.38978 9.15721 9.66884 11.13812 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.006528 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.933149 B = 4288.048242 C = 4353.412095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.139 3.861 3 N -0.972 5.972 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.084 0.916 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.274 1.274 13 S 2.800 3.200 14 O -1.002 7.002 15 O -0.981 6.981 16 N -0.996 5.996 17 C 0.122 3.878 18 C -0.128 4.128 19 C -0.113 4.113 20 C 0.206 3.794 21 H 0.089 0.911 22 C 0.100 3.900 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.182 4.182 26 C 0.110 3.890 27 N -0.435 5.435 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -11.000 11.764 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 N -0.812 5.812 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.102 0.898 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 S 2.811 3.189 14 O -0.986 6.986 15 O -0.965 6.965 16 N -0.832 5.832 17 C -0.003 4.003 18 C -0.168 4.168 19 C -0.153 4.153 20 C 0.098 3.902 21 H 0.107 0.893 22 C -0.040 4.040 23 C -0.186 4.186 24 C -0.105 4.105 25 C -0.202 4.202 26 C -0.046 4.046 27 N -0.144 5.144 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.930 -9.524 11.658 15.559 hybrid contribution 1.029 -1.401 -0.567 1.829 sum 4.959 -10.926 11.091 16.339 Atomic orbital electron populations 1.22327 0.97990 1.00966 1.02194 1.21351 0.92203 0.83838 1.01360 1.57470 1.77728 1.22228 1.23804 1.19132 0.97410 0.91820 0.79073 1.21862 1.02235 1.27018 1.05137 0.89830 1.24978 0.96816 0.95296 0.97246 1.69957 1.36015 1.30662 1.17120 0.86642 0.84731 0.77541 0.79225 1.21097 1.21603 1.19896 1.01235 0.71756 0.73070 0.72886 1.93509 1.70302 1.76652 1.58153 1.93560 1.85702 1.31027 1.86213 1.58989 1.23753 1.32537 1.67964 1.21992 0.84889 0.94754 0.98686 1.22781 0.99002 0.95133 0.99835 1.22602 0.92857 0.97493 1.02326 1.20084 0.94980 0.81596 0.93582 0.89316 1.21802 0.96053 0.95227 0.90936 1.21791 1.02403 0.93261 1.01107 1.21446 0.96322 0.98142 0.94602 1.22155 1.02885 0.99722 0.95435 1.22888 0.93617 0.87287 1.00816 1.67879 1.08444 1.30341 1.07701 0.92778 0.92949 0.92137 0.90145 0.92613 0.94911 0.93710 0.93039 0.90424 0.89978 0.90202 0.90974 0.90488 0.90423 0.85215 0.85323 0.85172 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 10.24 37.16 0.38 -2.63 16 2 C 0.14 2.59 3.35 -4.04 -0.01 2.58 16 3 N -0.97 -20.96 2.26 -115.66 -0.26 -21.22 16 4 C 0.25 6.25 5.44 -5.19 -0.03 6.22 16 5 C -0.52 -13.49 9.38 -34.44 -0.32 -13.82 16 6 H 0.08 2.08 6.88 -52.49 -0.36 1.71 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 S 2.80 60.17 5.86 -107.50 -0.63 59.54 16 14 O -1.00 -21.88 16.69 -57.17 -0.95 -22.83 16 15 O -0.98 -24.23 16.01 -57.17 -0.92 -25.15 16 16 N -1.00 -17.87 3.06 -105.63 -0.32 -18.20 16 17 C 0.12 2.05 7.10 -2.53 -0.02 2.03 16 18 C -0.13 -1.56 7.09 -24.58 -0.17 -1.73 16 19 C -0.11 -1.32 6.47 -24.90 -0.16 -1.48 16 20 C 0.21 2.99 3.08 -68.10 -0.21 2.78 16 21 H 0.09 1.18 8.12 -51.93 -0.42 0.76 16 22 C 0.10 1.48 4.55 -82.59 -0.38 1.10 16 23 C -0.17 -1.97 9.77 -39.44 -0.39 -2.36 16 24 C -0.08 -0.84 10.18 -39.28 -0.40 -1.24 16 25 C -0.18 -2.06 10.11 -39.44 -0.40 -2.46 16 26 C 0.11 1.58 7.84 -17.55 -0.14 1.44 16 27 N -0.44 -7.19 5.62 -9.47 -0.05 -7.25 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.46 5.75 -51.93 -0.30 1.16 16 32 H 0.06 1.01 4.82 -51.93 -0.25 0.76 16 33 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 34 H 0.04 1.27 6.91 -51.93 -0.36 0.91 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 1.35 7.78 -51.93 -0.40 0.94 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.16 2.25 7.37 -52.48 -0.39 1.87 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -33.01 366.76 -10.91 -43.92 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.67 Total: 3.07 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.34 Total: -8.09 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: 0.10 Total: -71.89 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.87 Total: -47.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 60.17 SS G_CDS: -0.63 Total: 59.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.01 -10.91 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558564900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.356 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds