Wall clock time and date at job start Tue Mar 31 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47177 * 2 1 4 4 C 1.46505 * 120.00145 * 275.00203 * 3 2 1 5 5 C 1.50700 * 109.46978 * 275.00016 * 4 3 2 6 6 H 1.08002 * 119.99992 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00052 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46847 * 90.00495 * 9 7 5 11 11 H 1.48504 * 109.47359 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47148 * 330.00468 * 9 7 5 13 13 S 1.65604 * 119.99739 * 95.00287 * 3 2 1 14 14 O 1.42095 * 106.40208 * 336.45720 * 13 3 2 15 15 O 1.42103 * 106.39797 * 203.53712 * 13 3 2 16 16 N 1.65598 * 107.22003 * 90.00154 * 13 3 2 17 17 C 1.47421 * 125.64972 * 90.01643 * 16 13 3 18 18 C 1.54917 * 104.83002 * 155.84033 * 17 16 13 19 19 C 1.55151 * 101.58025 * 37.01304 * 18 17 16 20 20 C 1.47021 * 125.64577 * 269.98380 * 16 13 3 21 21 H 1.08996 * 109.88310 * 300.50874 * 20 16 13 22 22 C 1.50705 * 109.88447 * 61.67670 * 20 16 13 23 23 C 1.38224 * 119.61661 * 204.73133 * 22 20 16 24 24 C 1.38626 * 119.16040 * 179.70771 * 23 22 20 25 25 C 1.38670 * 118.41838 * 0.55122 * 24 23 22 26 26 C 1.38176 * 119.16606 * 359.72890 * 25 24 23 27 27 N 1.31850 * 119.61861 * 24.99453 * 22 20 16 28 28 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46798 * 299.99858 * 1 2 3 30 30 H 1.09000 * 109.47021 * 59.99605 * 1 2 3 31 31 H 1.08999 * 109.46637 * 240.00028 * 2 1 3 32 32 H 1.09000 * 109.47021 * 120.00394 * 2 1 3 33 33 H 1.08995 * 109.47149 * 34.99872 * 4 3 2 34 34 H 1.08996 * 109.46848 * 155.00112 * 4 3 2 35 35 H 0.97002 * 120.00001 * 179.97438 * 8 7 5 36 36 H 1.09002 * 110.36865 * 37.00526 * 17 16 13 37 37 H 1.09001 * 110.37117 * 274.67844 * 17 16 13 38 38 H 1.08998 * 111.00193 * 155.08783 * 18 17 16 39 39 H 1.09004 * 111.00194 * 278.93638 * 18 17 16 40 40 H 1.09000 * 110.72429 * 82.86540 * 19 18 17 41 41 H 1.09003 * 110.71831 * 206.13662 * 19 18 17 42 42 H 1.08007 * 120.42048 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.79240 * 180.30044 * 24 23 22 44 44 H 1.08001 * 120.41805 * 179.71017 * 25 24 23 45 45 H 1.08004 * 119.62158 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1720 1.1110 -1.3840 7 6 3.8525 2.3606 -3.0848 8 7 3.0275 3.1856 -3.6920 9 14 5.5094 1.9646 -3.8511 10 1 5.3745 0.7811 -4.7378 11 1 5.9778 3.1280 -4.6464 12 1 6.4931 1.6699 -2.7784 13 16 2.4123 2.1201 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5185 1.1999 16 7 4.0145 1.8136 1.7137 17 6 5.1424 2.6503 1.2653 18 6 6.2916 2.3293 2.2532 19 6 6.0835 0.8101 2.4900 20 6 4.5477 0.6623 2.4565 21 1 4.1531 0.6617 3.4725 22 6 4.1713 -0.6181 1.7566 23 6 4.0962 -1.7946 2.4784 24 6 3.7432 -2.9658 1.8263 25 6 3.4888 -2.9118 0.4641 26 6 3.5895 -1.7000 -0.1922 27 7 3.9224 -0.6042 0.4619 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3618 1.8098 -1.9453 34 1 2.0922 3.1802 -1.0755 35 1 3.2794 3.5881 -4.5378 36 1 4.8774 3.7062 1.3218 37 1 5.4310 2.3847 0.2483 38 1 7.2631 2.5244 1.7990 39 1 6.1766 2.8889 3.1815 40 1 6.5444 0.2286 1.6917 41 1 6.4783 0.5137 3.4618 42 1 4.3058 -1.8005 3.5379 43 1 3.6718 -3.8989 2.3654 44 1 3.2158 -3.8057 -0.0770 45 1 3.3927 -1.6495 -1.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558564900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:54 Heat of formation + Delta-G solvation = -35.494692 kcal Electronic energy + Delta-G solvation = -30511.578081 eV Core-core repulsion = 26655.882001 eV Total energy + Delta-G solvation = -3855.696080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40996 -39.06480 -38.29792 -37.52313 -36.88986 -34.58779 -33.25024 -32.88716 -31.76248 -31.43851 -29.09481 -28.37190 -24.91725 -24.55607 -24.26810 -23.29545 -22.56569 -21.81048 -19.87420 -18.78046 -18.69337 -18.10163 -17.77244 -17.27913 -16.81679 -16.52749 -16.38625 -15.87051 -15.59978 -15.12473 -14.94795 -14.68917 -14.49851 -14.33126 -14.09493 -13.88966 -13.65314 -13.47452 -13.36376 -13.30183 -13.22689 -13.04242 -12.84604 -12.72445 -12.66737 -12.56780 -12.23861 -12.13948 -12.02829 -11.97551 -11.67255 -11.57753 -11.41184 -10.53092 -10.48076 -10.15913 -9.97030 -9.64892 -9.51655 -8.05512 -6.14367 -0.24917 0.30280 0.56614 1.42800 1.44537 1.55018 2.01848 2.48724 2.63431 2.99655 3.24276 3.26883 3.42721 3.71834 3.91525 3.95784 4.01243 4.19119 4.21191 4.34250 4.40251 4.41312 4.46826 4.51206 4.66953 4.71386 4.76541 4.88031 4.92447 4.98097 4.99587 5.08295 5.12855 5.14676 5.19694 5.27761 5.35151 5.40733 5.41726 5.49249 5.55998 5.68981 5.90357 5.96443 6.10734 6.29603 7.05701 7.30681 7.53856 9.03572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.006528 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.933149 B = 4288.048242 C = 4353.412095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.140 3.860 3 N -0.976 5.976 4 C 0.267 3.733 5 C -0.513 4.513 6 H 0.094 0.906 7 C 0.003 3.997 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.263 1.263 13 S 2.808 3.192 14 O -1.007 7.007 15 O -1.023 7.023 16 N -0.995 5.995 17 C 0.114 3.886 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.193 3.807 21 H 0.103 0.897 22 C 0.074 3.926 23 C -0.161 4.161 24 C -0.074 4.074 25 C -0.170 4.170 26 C 0.085 3.915 27 N -0.477 5.477 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.014 0.986 34 H 0.006 0.994 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 -14.151 13.807 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 N -0.816 5.816 4 C 0.143 3.857 5 C -0.553 4.553 6 H 0.111 0.889 7 C -0.194 4.194 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.220 1.220 12 H -0.188 1.188 13 S 2.819 3.181 14 O -0.991 6.991 15 O -1.008 7.008 16 N -0.834 5.834 17 C -0.011 4.011 18 C -0.155 4.155 19 C -0.140 4.140 20 C 0.086 3.914 21 H 0.121 0.879 22 C -0.066 4.066 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.190 4.190 26 C -0.071 4.071 27 N -0.186 5.186 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.176 0.824 43 H 0.184 0.816 44 H 0.176 0.824 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.891 -12.710 13.722 19.610 hybrid contribution 0.391 -0.493 -1.130 1.293 sum 6.281 -13.203 12.593 19.296 Atomic orbital electron populations 1.22329 0.97085 1.02865 1.01044 1.21499 0.92861 0.82187 1.02022 1.57347 1.78661 1.23259 1.22284 1.18627 0.96846 0.89979 0.80241 1.22083 1.02242 1.26194 1.04764 0.88851 1.25798 1.00340 0.95271 0.97989 1.70107 1.38112 1.32220 1.17638 0.85582 0.80549 0.77179 0.78423 1.20256 1.21998 1.18756 1.00712 0.72654 0.72050 0.72688 1.93483 1.71226 1.76403 1.57998 1.93500 1.86781 1.33800 1.86713 1.58673 1.22542 1.34221 1.67986 1.22068 0.86423 0.93695 0.98943 1.22774 0.97477 0.95977 0.99226 1.22611 0.90625 0.96582 1.04212 1.20535 0.96913 0.80347 0.93610 0.87913 1.21903 0.97631 0.96241 0.90782 1.22114 1.01061 0.92545 1.02381 1.21893 0.94641 0.99168 0.94289 1.22410 1.01164 0.99357 0.96064 1.22867 0.95331 0.88296 1.00644 1.67709 1.09956 1.31914 1.09028 0.89341 0.94048 0.93294 0.89911 0.91504 0.96840 0.97643 0.93192 0.92158 0.92782 0.88395 0.89018 0.91315 0.86417 0.82385 0.81633 0.82448 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 10.24 71.98 0.74 -5.24 16 2 C 0.14 5.25 3.35 86.38 0.29 5.54 16 3 N -0.98 -43.70 2.26 -519.85 -1.17 -44.87 16 4 C 0.27 14.25 5.44 85.63 0.47 14.71 16 5 C -0.51 -27.44 9.38 25.60 0.24 -27.20 16 6 H 0.09 4.75 6.88 -2.91 -0.02 4.73 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.94 -56.46 13.29 21.44 0.28 -56.18 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 S 2.81 124.33 5.86 -56.49 -0.33 124.00 16 14 O -1.01 -44.12 16.69 -128.00 -2.14 -46.26 16 15 O -1.02 -53.47 16.01 -128.00 -2.05 -55.52 16 16 N -1.00 -35.76 3.06 -488.11 -1.49 -37.26 16 17 C 0.11 3.88 7.10 86.86 0.62 4.50 16 18 C -0.12 -2.54 7.09 31.99 0.23 -2.31 16 19 C -0.10 -2.03 6.47 31.78 0.21 -1.82 16 20 C 0.19 5.22 3.08 44.60 0.14 5.35 16 21 H 0.10 2.44 8.12 -2.39 -0.02 2.42 16 22 C 0.07 2.04 4.55 42.55 0.19 2.23 16 23 C -0.16 -3.22 9.77 22.36 0.22 -3.01 16 24 C -0.07 -1.25 10.18 22.47 0.23 -1.02 16 25 C -0.17 -3.32 10.11 22.36 0.23 -3.10 16 26 C 0.08 2.33 7.84 84.67 0.66 2.99 16 27 N -0.48 -15.36 5.62 -183.89 -1.03 -16.39 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 3.05 5.75 -2.39 -0.01 3.04 16 32 H 0.07 2.37 4.82 -2.39 -0.01 2.36 16 33 H 0.01 0.76 8.11 -2.39 -0.02 0.74 16 34 H 0.01 0.34 6.91 -2.39 -0.02 0.32 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 36 H 0.06 2.20 7.78 -2.39 -0.02 2.18 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 41 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.15 4.20 7.37 -2.91 -0.02 4.18 16 Total: -1.00 -75.59 366.76 -0.01 -75.60 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.98 Total: 18.79 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.91 Total: -7.72 kcal Atomic # 7 Polarization: -151.28 SS G_CDS: -3.42 Total: -154.70 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -4.19 Total: -101.78 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 124.33 SS G_CDS: -0.33 Total: 124.00 kcal Total: -75.59 -0.01 -75.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558564900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.103 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds