Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47478 * 2 1 4 4 C 1.46505 * 119.99722 * 274.94108 * 3 2 1 5 5 C 1.50699 * 109.47129 * 263.11181 * 4 3 2 6 6 H 1.07994 * 120.00290 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47433 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46995 * 119.99892 * 9 7 5 12 12 H 1.48502 * 109.47427 * 239.99868 * 9 7 5 13 13 C 1.34779 * 120.00560 * 94.93822 * 3 2 1 14 14 O 1.21364 * 119.99441 * 3.69327 * 13 3 2 15 15 C 1.49304 * 120.00223 * 183.69077 * 13 3 2 16 16 O 1.21377 * 120.00016 * 354.26536 * 15 13 3 17 17 N 1.34775 * 119.99665 * 174.26778 * 15 13 3 18 18 C 1.38752 * 119.99910 * 179.97438 * 17 15 13 19 19 N 1.29680 * 124.94733 * 179.97438 * 18 17 15 20 20 C 1.31910 * 116.92738 * 180.02562 * 19 18 17 21 21 C 1.50705 * 122.71203 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47340 * 299.99930 * 21 20 19 23 23 C 1.52998 * 109.47303 * 60.00452 * 21 20 19 24 24 C 1.33529 * 114.56918 * 0.02562 * 20 19 18 25 25 C 1.50696 * 125.97186 * 179.97438 * 24 20 19 26 26 S 1.70972 * 124.94257 * 0.31450 * 18 17 15 27 27 H 1.09001 * 109.47288 * 300.00641 * 1 2 3 28 28 H 1.09000 * 109.46937 * 60.00061 * 1 2 3 29 29 H 1.08992 * 109.47438 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47288 * 239.99359 * 2 1 3 31 31 H 1.09002 * 109.46925 * 119.99392 * 2 1 3 32 32 H 1.09000 * 109.46929 * 23.11540 * 4 3 2 33 33 H 1.09005 * 109.46612 * 143.10812 * 4 3 2 34 34 H 0.96994 * 120.00654 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00465 * 0.02562 * 17 15 13 36 36 H 1.09000 * 109.46535 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.46736 * 60.00259 * 22 21 20 38 38 H 1.08997 * 109.46873 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.47214 * 300.00756 * 22 21 20 40 40 H 1.09005 * 109.47010 * 299.99886 * 23 21 20 41 41 H 1.09004 * 109.46959 * 59.99532 * 23 21 20 42 42 H 1.08996 * 109.47253 * 179.97438 * 23 21 20 43 43 H 1.08998 * 109.47163 * 90.00287 * 25 24 20 44 44 H 1.08998 * 109.47193 * 329.99726 * 25 24 20 45 45 H 1.09008 * 109.46703 * 210.00033 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1081 -1.2641 5 6 3.5890 2.0256 -1.7341 6 1 4.3193 1.4860 -1.1496 7 6 3.9645 2.6398 -2.9099 8 7 3.0752 3.2974 -3.6216 9 14 5.7365 2.5381 -3.4922 10 1 6.5324 1.7464 -2.5202 11 1 5.7834 1.8795 -4.8224 12 1 6.3024 3.9071 -3.5975 13 6 2.3378 1.9831 1.1628 14 8 2.2849 1.3602 2.2031 15 6 2.7567 3.4161 1.1712 16 8 2.9103 4.0097 0.1237 17 7 2.9643 4.0506 2.3420 18 6 3.3542 5.3822 2.3499 19 7 3.5791 6.0841 3.4169 20 6 3.9427 7.3397 3.2403 21 6 4.2369 8.2715 4.3877 22 6 2.9917 8.4078 5.2662 23 6 5.3895 7.7069 5.2206 24 6 4.0291 7.7183 1.9627 25 6 4.4195 9.0878 1.4698 26 16 3.5999 6.3389 0.9544 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5043 1.6643 -2.0136 33 1 1.8857 3.1527 -1.1150 34 1 3.3395 3.7299 -4.4486 35 1 2.8420 3.5762 3.1792 36 1 4.5153 9.2507 3.9982 37 1 2.7129 7.4286 5.6557 38 1 3.2047 9.0813 6.0963 39 1 2.1706 8.8099 4.6728 40 1 5.1107 6.7278 5.6100 41 1 6.2766 7.6099 4.5946 42 1 5.6025 8.3811 6.0501 43 1 5.4999 9.1301 1.3323 44 1 4.1166 9.8372 2.2011 45 1 3.9242 9.2866 0.5193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565246289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = -36.690684 kcal Electronic energy + Delta-G solvation = -27704.198800 eV Core-core repulsion = 23848.450858 eV Total energy + Delta-G solvation = -3855.747942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21539 -41.08763 -39.83279 -37.64431 -36.55590 -34.97023 -34.70252 -32.90987 -32.08526 -29.15227 -28.15353 -27.96935 -26.39183 -25.05412 -24.90481 -23.71205 -22.50884 -21.60300 -19.84644 -19.04217 -18.74592 -18.17805 -18.03330 -17.43276 -17.21677 -16.69192 -16.21499 -16.11202 -15.81776 -15.40484 -15.04845 -14.96605 -14.53071 -14.36375 -14.14527 -13.89514 -13.83448 -13.70434 -13.57850 -13.51608 -13.16050 -12.97943 -12.94442 -12.73152 -12.71062 -12.40982 -12.17490 -12.12119 -11.82772 -11.74436 -11.70274 -11.61144 -11.49395 -10.75171 -10.70704 -10.28409 -10.13191 -9.68895 -9.12978 -8.15736 -6.24939 -0.43014 0.10174 0.37111 0.82208 1.09013 1.37493 1.40563 1.49623 1.70908 2.11780 2.32224 2.46302 3.17472 3.18353 3.45976 3.94788 4.08859 4.13494 4.30252 4.30967 4.32740 4.41003 4.50043 4.63883 4.73809 4.75124 4.84045 4.85645 4.91688 4.96928 5.00787 5.01571 5.04439 5.19423 5.24932 5.34934 5.38982 5.39742 5.40160 5.48306 5.68934 5.76050 6.08591 6.21211 6.46101 6.71552 6.77550 6.90298 7.41926 8.92341 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.003944 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.226164 B = 7098.455793 C = 8769.653448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.558 5.558 4 C 0.238 3.762 5 C -0.528 4.528 6 H 0.044 0.956 7 C 0.029 3.971 8 N -0.915 5.915 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.515 3.485 14 O -0.555 6.555 15 C 0.489 3.511 16 O -0.449 6.449 17 N -0.598 5.598 18 C 0.225 3.775 19 N -0.506 5.506 20 C 0.075 3.925 21 C -0.017 4.017 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.275 4.275 25 C -0.069 4.069 26 S 0.204 5.796 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.434 0.566 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 9.107 13.025 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.288 5.288 4 C 0.118 3.882 5 C -0.566 4.566 6 H 0.062 0.938 7 C -0.172 4.172 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.207 1.207 13 C 0.297 3.703 14 O -0.436 6.436 15 C 0.270 3.730 16 O -0.318 6.318 17 N -0.251 5.251 18 C -0.141 4.141 19 N -0.229 5.229 20 C -0.057 4.057 21 C -0.038 4.038 22 C -0.194 4.194 23 C -0.194 4.194 24 C -0.397 4.397 25 C -0.128 4.128 26 S 0.455 5.545 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.275 0.725 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.429 8.682 11.964 14.788 hybrid contribution 0.926 -0.178 0.383 1.018 sum 0.496 8.504 12.347 15.001 Atomic orbital electron populations 1.22047 0.93822 1.03736 1.01661 1.21753 0.95779 0.80641 1.03817 1.48303 1.58705 1.14810 1.07003 1.19672 0.96407 0.93243 0.78877 1.21413 0.95005 1.33413 1.06790 0.93761 1.25448 1.00594 0.94536 0.96588 1.70002 1.35145 1.34850 1.15421 0.85708 0.80991 0.77827 0.78344 1.19892 1.19888 1.20732 1.19278 0.79865 0.86406 0.84767 1.90675 1.55473 1.65644 1.31798 1.20754 0.79696 0.89470 0.83081 1.90891 1.44839 1.66193 1.29901 1.42336 1.64511 1.07223 1.11003 1.23259 1.04550 0.91036 0.95290 1.66071 1.20180 1.07247 1.29432 1.20155 1.01042 0.89612 0.94856 1.19927 0.96851 0.96001 0.91020 1.21742 0.96302 1.01879 0.99477 1.21739 0.96690 1.01238 0.99754 1.26610 1.12912 1.03689 0.96490 1.20309 1.02308 0.88083 1.02070 1.85579 1.62404 1.00243 1.06252 0.93203 0.92877 0.88552 0.89483 0.89572 0.95622 0.92731 0.92639 0.72495 0.87282 0.93704 0.89961 0.93170 0.93717 0.93406 0.89921 0.89746 0.88140 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 10.24 71.98 0.74 -3.52 16 2 C 0.10 3.39 6.18 86.38 0.53 3.92 16 3 N -0.56 -23.15 2.48 -827.90 -2.05 -25.21 16 4 C 0.24 11.63 4.79 85.63 0.41 12.04 16 5 C -0.53 -28.31 8.31 25.60 0.21 -28.10 16 6 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 7 C 0.03 1.56 5.46 84.65 0.46 2.02 16 8 N -0.91 -51.93 13.29 21.45 0.28 -51.64 16 9 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.52 21.15 7.66 87.22 0.67 21.82 16 14 O -0.55 -22.41 15.97 -3.29 -0.05 -22.46 16 15 C 0.49 20.03 7.72 87.22 0.67 20.71 16 16 O -0.45 -20.88 9.83 -3.33 -0.03 -20.91 16 17 N -0.60 -21.23 5.39 -315.14 -1.70 -22.92 16 18 C 0.22 7.93 8.18 179.27 1.47 9.40 16 19 N -0.51 -16.29 10.48 -189.74 -1.99 -18.28 16 20 C 0.08 2.05 5.31 41.48 0.22 2.27 16 21 C -0.02 -0.33 3.18 -11.54 -0.04 -0.37 16 22 C -0.14 -2.45 9.14 71.98 0.66 -1.79 16 23 C -0.14 -2.53 9.14 71.98 0.66 -1.87 16 24 C -0.27 -7.44 6.58 24.62 0.16 -7.27 16 25 C -0.07 -1.26 9.91 71.23 0.71 -0.56 16 26 S 0.20 7.14 20.21 -56.49 -1.14 6.00 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.85 8.11 -2.39 -0.02 2.83 16 31 H 0.09 2.77 7.24 -2.39 -0.02 2.75 16 32 H 0.03 1.30 8.02 -2.39 -0.02 1.28 16 33 H 0.06 2.92 5.41 -2.39 -0.01 2.91 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.43 13.81 8.30 -92.71 -0.77 13.04 16 36 H 0.11 1.57 6.29 -2.39 -0.02 1.55 16 37 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.10 1.32 6.80 -2.39 -0.02 1.31 16 45 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -64.72 386.14 3.12 -61.60 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.24 Total: 19.53 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 7.53 Total: 28.70 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -5.45 Total: -118.05 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.09 Total: -43.37 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.14 Total: 6.00 kcal Total: -64.72 3.12 -61.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565246289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.909 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds