Wall clock time and date at job start Tue Mar 31 2020 22:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46748 * 110.99978 * 2 1 4 4 C 1.53424 * 108.58281 * 175.01544 * 3 2 1 5 5 O 1.43109 * 107.91624 * 296.69054 * 4 3 2 6 6 C 1.36010 * 116.72335 * 45.45984 * 5 4 3 7 7 C 1.39090 * 118.58391 * 165.22132 * 6 5 4 8 8 C 1.37693 * 120.40805 * 179.53908 * 7 6 5 9 9 C 1.39713 * 119.88318 * 0.02562 * 8 7 6 10 10 C 1.47579 * 120.10237 * 180.02562 * 9 8 7 11 11 O 1.21577 * 120.00201 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99608 * 0.02562 * 10 9 8 13 13 C 1.39381 * 120.00132 * 174.95850 * 12 10 9 14 14 C 1.38619 * 119.58360 * 185.37221 * 13 12 10 15 15 C 1.40799 * 118.79400 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99396 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99682 * 151.71830 * 16 15 14 18 18 C 1.40030 * 120.00295 * 331.71955 * 16 15 14 19 19 N 1.30733 * 120.00023 * 350.21067 * 18 16 15 20 20 Si 1.86803 * 119.99913 * 170.21387 * 18 16 15 21 21 H 1.48502 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47225 * 120.00099 * 20 18 16 23 23 H 1.48503 * 109.47040 * 240.00045 * 20 18 16 24 24 C 1.41175 * 118.01029 * 0.02562 * 15 14 13 25 25 C 1.37589 * 119.02083 * 359.97438 * 24 15 14 26 26 N 1.32089 * 121.10742 * 359.72388 * 25 24 15 27 27 C 1.39575 * 119.80632 * 0.08002 * 9 8 7 28 28 C 1.38728 * 120.12292 * 359.97438 * 27 9 8 29 29 H 1.08994 * 109.46905 * 56.04724 * 1 2 3 30 30 H 1.09000 * 109.47322 * 176.04414 * 1 2 3 31 31 H 1.08998 * 109.47067 * 296.04677 * 1 2 3 32 32 H 1.09004 * 109.62102 * 294.74649 * 3 2 1 33 33 H 1.09002 * 109.62177 * 55.28907 * 3 2 1 34 34 H 1.09002 * 109.76774 * 56.28538 * 4 3 2 35 35 H 1.08994 * 109.77218 * 177.07274 * 4 3 2 36 36 H 1.07989 * 119.79582 * 359.52883 * 7 6 5 37 37 H 1.07999 * 120.05521 * 180.02562 * 8 7 6 38 38 H 0.97009 * 120.00158 * 354.96085 * 12 10 9 39 39 H 1.08006 * 120.60330 * 0.02815 * 14 13 12 40 40 H 0.97004 * 120.00474 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.49030 * 180.02562 * 24 15 14 42 42 H 1.08001 * 119.44599 * 179.97438 * 25 24 15 43 43 H 1.07997 * 119.94066 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9950 1.3700 0.0000 4 6 3.5227 1.3073 0.1264 5 8 3.8359 0.7163 1.3915 6 6 3.1364 -0.3981 1.7360 7 6 3.6055 -1.1801 2.7863 8 6 2.9216 -2.3110 3.1726 9 6 1.7494 -2.6773 2.5065 10 6 1.0123 -3.8881 2.9169 11 8 -0.0073 -4.2054 2.3357 12 7 1.4695 -4.6422 3.9362 13 6 0.7201 -5.7251 4.3927 14 6 1.1422 -6.4263 5.5115 15 6 0.3729 -7.5177 5.9580 16 6 0.7608 -8.2665 7.0947 17 1 0.0130 -8.7634 7.6950 18 6 2.1142 -8.3630 7.4411 19 7 3.0322 -7.9284 6.6180 20 14 2.6078 -9.1129 9.0793 21 1 1.3898 -9.5241 9.8226 22 1 3.4675 -10.3001 8.8412 23 1 3.3587 -8.1099 9.8766 24 6 -0.7965 -7.8435 5.2373 25 6 -1.1352 -7.0886 4.1380 26 7 -0.3892 -6.0681 3.7549 27 6 1.2780 -1.8952 1.4509 28 6 1.9707 -0.7572 1.0641 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 -0.3633 0.4512 0.9233 32 1 1.7249 1.8658 -0.9325 33 1 1.5803 1.9213 0.8440 34 1 3.9343 0.6970 -0.6776 35 1 3.9384 2.3136 0.0762 36 1 4.5117 -0.8986 3.3017 37 1 3.2908 -2.9138 3.9891 38 1 2.3202 -4.4313 4.3520 39 1 2.0449 -6.1406 6.0313 40 1 3.9697 -7.9949 6.8581 41 1 -1.4166 -8.6726 5.5448 42 1 -2.0281 -7.3320 3.5813 43 1 0.3724 -2.1765 0.9342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588649598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:21 Heat of formation + Delta-G solvation = 13.253644 kcal Electronic energy + Delta-G solvation = -28101.966185 eV Core-core repulsion = 24112.940041 eV Total energy + Delta-G solvation = -3989.026145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32791 -39.69162 -38.09957 -37.19692 -36.68036 -34.35493 -33.75934 -31.32288 -30.66077 -30.48148 -29.41338 -28.40075 -26.00691 -25.65880 -24.74402 -22.93197 -22.00219 -21.63786 -20.83382 -19.45485 -18.56951 -17.66629 -17.61086 -17.02053 -16.31144 -15.53031 -15.36131 -15.24369 -14.90650 -14.69899 -14.51617 -14.26751 -14.22108 -14.18979 -13.89349 -13.61231 -13.30929 -12.88867 -12.61371 -12.61003 -12.47801 -12.25925 -12.06162 -11.80242 -11.45056 -11.21519 -11.17651 -10.93003 -10.91070 -10.29274 -10.18748 -10.13344 -9.74446 -9.47053 -9.39702 -8.65272 -7.96669 -7.87049 -7.74818 -7.04087 -6.75905 -4.62611 0.86448 1.18772 2.57947 2.78007 2.89084 3.02596 3.07858 3.14724 3.24355 3.39870 3.64356 3.86263 4.03121 4.15089 4.39535 4.60902 4.64454 4.70021 4.90079 4.97389 5.05040 5.06178 5.11477 5.13500 5.27655 5.31559 5.55027 5.65181 5.65799 5.79139 5.95919 6.07838 6.26129 6.33919 6.54257 6.57169 6.65676 6.69423 6.79601 6.95170 7.11462 7.15516 7.36774 7.45269 7.77744 7.93811 8.20010 8.41832 8.69502 8.75449 8.86433 9.66616 10.11011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.002475 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.817666 B =11312.688885 C =12623.829056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.490 5.490 3 C 0.013 3.987 4 C 0.058 3.942 5 O -0.313 6.313 6 C 0.106 3.894 7 C -0.129 4.129 8 C -0.079 4.079 9 C -0.129 4.129 10 C 0.545 3.455 11 O -0.479 6.479 12 N -0.652 5.652 13 C 0.336 3.664 14 C -0.235 4.235 15 C 0.143 3.857 16 C -0.456 4.456 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.280 4.280 25 C 0.117 3.883 26 N -0.551 5.551 27 C -0.065 4.065 28 C 0.031 3.969 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.407 0.593 39 H 0.130 0.870 40 H 0.281 0.719 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 17.748 -8.823 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.206 5.206 3 C -0.114 4.114 4 C -0.018 4.018 5 O -0.226 6.226 6 C 0.058 3.942 7 C -0.148 4.148 8 C -0.098 4.098 9 C -0.133 4.133 10 C 0.330 3.670 11 O -0.350 6.350 12 N -0.298 5.298 13 C 0.111 3.889 14 C -0.261 4.261 15 C 0.135 3.865 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.304 4.304 25 C -0.038 4.038 26 N -0.270 5.270 27 C -0.086 4.086 28 C -0.066 4.066 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.244 0.756 39 H 0.148 0.852 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.196 18.033 -10.426 21.074 hybrid contribution 0.777 -0.463 2.027 2.219 sum 3.973 17.570 -8.399 19.875 Atomic orbital electron populations 1.22606 0.84123 1.04173 1.01599 1.58864 1.09596 1.12394 1.39770 1.22832 0.96205 0.88898 1.03488 1.23170 0.94281 0.99681 0.84638 1.86196 1.60046 1.39214 1.37191 1.18857 0.91455 0.88012 0.95858 1.20344 1.01665 0.94718 0.98083 1.21105 0.93718 0.95967 0.99036 1.19902 0.97196 0.97346 0.98896 1.18167 0.85290 0.82891 0.80633 1.90844 1.23168 1.69713 1.51319 1.43314 1.23225 1.28606 1.34663 1.18170 0.90743 0.87999 0.91991 1.21608 1.05584 0.99428 0.99445 1.17591 0.89297 0.88812 0.90838 1.19593 0.92512 1.27627 1.09047 0.90005 1.25933 0.96446 0.93901 0.97953 1.69747 1.02014 1.36213 1.34270 0.86169 0.79400 0.79147 0.81473 1.18382 1.19897 1.19704 1.21953 1.03258 1.04549 1.00592 1.21781 0.96856 0.90868 0.94250 1.67225 1.06911 1.19437 1.33452 1.20991 0.99830 0.92272 0.95527 1.18745 0.96239 0.97569 0.94063 0.90345 0.89525 0.94032 0.88066 0.92383 0.90486 0.86692 0.84385 0.84653 0.75637 0.85227 0.90848 0.87895 0.85811 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.98 60.07 0.54 0.73 16 2 N -0.49 -5.14 4.89 -178.68 -0.87 -6.02 16 3 C 0.01 0.10 5.73 -3.69 -0.02 0.08 16 4 C 0.06 0.43 7.25 37.38 0.27 0.71 16 5 O -0.31 -3.45 10.39 -19.77 -0.21 -3.65 16 6 C 0.11 1.32 6.48 -38.89 -0.25 1.07 16 7 C -0.13 -1.53 9.91 -39.46 -0.39 -1.92 16 8 C -0.08 -1.01 9.53 -39.23 -0.37 -1.39 16 9 C -0.13 -2.02 5.87 -105.04 -0.62 -2.64 16 10 C 0.54 10.81 7.72 -12.45 -0.10 10.71 16 11 O -0.48 -11.24 14.58 5.30 0.08 -11.17 16 12 N -0.65 -13.14 5.33 -12.43 -0.07 -13.20 16 13 C 0.34 8.21 7.41 -154.77 -1.15 7.06 16 14 C -0.24 -5.96 8.59 -38.47 -0.33 -6.29 16 15 C 0.14 3.76 5.58 -106.55 -0.59 3.16 16 16 C -0.46 -11.69 9.13 -37.65 -0.34 -12.03 16 17 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 18 C 0.08 1.82 5.30 -17.35 -0.09 1.73 16 19 N -0.80 -19.56 10.83 55.55 0.60 -18.96 16 20 Si 0.91 17.94 29.57 -169.99 -5.03 12.92 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 C -0.28 -6.86 9.90 -38.70 -0.38 -7.25 16 25 C 0.12 2.82 11.15 -17.68 -0.20 2.62 16 26 N -0.55 -14.18 7.85 -12.54 -0.10 -14.28 16 27 C -0.06 -0.95 8.61 -38.90 -0.33 -1.28 16 28 C 0.03 0.40 5.82 -83.61 -0.49 -0.09 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.85 6.09 -51.93 -0.32 0.53 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 1.48 6.41 -52.49 -0.34 1.15 16 38 H 0.41 6.78 6.73 -40.82 -0.27 6.50 16 39 H 0.13 3.25 6.27 -52.48 -0.33 2.92 16 40 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 41 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 43 H 0.14 2.13 5.56 -52.49 -0.29 1.84 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -32.66 357.95 -9.95 -42.60 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.90 Total: 11.39 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -4.85 Total: -5.03 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.44 Total: -52.46 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.13 Total: -14.82 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.66 -9.95 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.858 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds