Wall clock time and date at job start Tue Mar 31 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46748 * 110.99978 * 2 1 4 4 C 1.53424 * 108.58281 * 175.01544 * 3 2 1 5 5 O 1.43109 * 107.91624 * 296.69054 * 4 3 2 6 6 C 1.36010 * 116.72335 * 45.45984 * 5 4 3 7 7 C 1.39090 * 118.58391 * 165.22132 * 6 5 4 8 8 C 1.37693 * 120.40805 * 179.53908 * 7 6 5 9 9 C 1.39713 * 119.88318 * 0.02562 * 8 7 6 10 10 C 1.47579 * 120.10237 * 180.02562 * 9 8 7 11 11 O 1.21577 * 120.00201 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99608 * 0.02562 * 10 9 8 13 13 C 1.39381 * 120.00132 * 174.95850 * 12 10 9 14 14 C 1.38619 * 119.58360 * 185.37221 * 13 12 10 15 15 C 1.40799 * 118.79400 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99396 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99682 * 151.71830 * 16 15 14 18 18 C 1.40030 * 120.00295 * 331.71955 * 16 15 14 19 19 N 1.30733 * 120.00023 * 350.21067 * 18 16 15 20 20 Si 1.86803 * 119.99913 * 170.21387 * 18 16 15 21 21 H 1.48502 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47225 * 120.00099 * 20 18 16 23 23 H 1.48503 * 109.47040 * 240.00045 * 20 18 16 24 24 C 1.41175 * 118.01029 * 0.02562 * 15 14 13 25 25 C 1.37589 * 119.02083 * 359.97438 * 24 15 14 26 26 N 1.32089 * 121.10742 * 359.72388 * 25 24 15 27 27 C 1.39575 * 119.80632 * 0.08002 * 9 8 7 28 28 C 1.38728 * 120.12292 * 359.97438 * 27 9 8 29 29 H 1.08994 * 109.46905 * 56.04724 * 1 2 3 30 30 H 1.09000 * 109.47322 * 176.04414 * 1 2 3 31 31 H 1.08998 * 109.47067 * 296.04677 * 1 2 3 32 32 H 1.09004 * 109.62102 * 294.74649 * 3 2 1 33 33 H 1.09002 * 109.62177 * 55.28907 * 3 2 1 34 34 H 1.09002 * 109.76774 * 56.28538 * 4 3 2 35 35 H 1.08994 * 109.77218 * 177.07274 * 4 3 2 36 36 H 1.07989 * 119.79582 * 359.52883 * 7 6 5 37 37 H 1.07999 * 120.05521 * 180.02562 * 8 7 6 38 38 H 0.97009 * 120.00158 * 354.96085 * 12 10 9 39 39 H 1.08006 * 120.60330 * 0.02815 * 14 13 12 40 40 H 0.97004 * 120.00474 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.49030 * 180.02562 * 24 15 14 42 42 H 1.08001 * 119.44599 * 179.97438 * 25 24 15 43 43 H 1.07997 * 119.94066 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9950 1.3700 0.0000 4 6 3.5227 1.3073 0.1264 5 8 3.8359 0.7163 1.3915 6 6 3.1364 -0.3981 1.7360 7 6 3.6055 -1.1801 2.7863 8 6 2.9216 -2.3110 3.1726 9 6 1.7494 -2.6773 2.5065 10 6 1.0123 -3.8881 2.9169 11 8 -0.0073 -4.2054 2.3357 12 7 1.4695 -4.6422 3.9362 13 6 0.7201 -5.7251 4.3927 14 6 1.1422 -6.4263 5.5115 15 6 0.3729 -7.5177 5.9580 16 6 0.7608 -8.2665 7.0947 17 1 0.0130 -8.7634 7.6950 18 6 2.1142 -8.3630 7.4411 19 7 3.0322 -7.9284 6.6180 20 14 2.6078 -9.1129 9.0793 21 1 1.3898 -9.5241 9.8226 22 1 3.4675 -10.3001 8.8412 23 1 3.3587 -8.1099 9.8766 24 6 -0.7965 -7.8435 5.2373 25 6 -1.1352 -7.0886 4.1380 26 7 -0.3892 -6.0681 3.7549 27 6 1.2780 -1.8952 1.4509 28 6 1.9707 -0.7572 1.0641 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 -0.3633 0.4512 0.9233 32 1 1.7249 1.8658 -0.9325 33 1 1.5803 1.9213 0.8440 34 1 3.9343 0.6970 -0.6776 35 1 3.9384 2.3136 0.0762 36 1 4.5117 -0.8986 3.3017 37 1 3.2908 -2.9138 3.9891 38 1 2.3202 -4.4313 4.3520 39 1 2.0449 -6.1406 6.0313 40 1 3.9697 -7.9949 6.8581 41 1 -1.4166 -8.6726 5.5448 42 1 -2.0281 -7.3320 3.5813 43 1 0.3724 -2.1765 0.9342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588649598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:20 Heat of formation + Delta-G solvation = -7.336652 kcal Electronic energy + Delta-G solvation = -28102.859048 eV Core-core repulsion = 24112.940041 eV Total energy + Delta-G solvation = -3989.919007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24273 -41.26633 -39.72433 -38.23166 -37.65908 -36.14943 -35.54048 -32.54329 -32.17206 -31.62763 -30.54757 -29.80509 -27.91129 -26.60731 -25.64427 -24.16931 -23.82745 -22.83358 -22.23266 -20.79889 -19.68198 -19.30746 -18.78928 -18.01744 -17.55107 -17.01425 -16.94288 -16.26797 -16.14150 -16.06459 -15.84198 -15.62033 -15.53618 -15.27171 -15.14831 -14.72443 -14.59826 -14.39824 -14.27995 -14.11975 -13.51437 -13.19010 -13.11976 -12.87619 -12.85526 -12.70990 -12.62540 -12.14187 -12.03323 -11.86031 -11.75214 -11.51582 -11.19092 -11.13516 -11.05275 -9.91678 -9.66683 -9.63845 -8.91762 -8.74824 -8.58592 -6.57284 -0.27265 0.19592 0.80116 0.99344 1.42708 1.54744 1.57289 1.83864 2.02822 2.19463 2.21995 2.53811 2.76055 2.88821 3.41031 3.52404 3.64606 3.73234 3.93775 4.05359 4.07782 4.12071 4.23006 4.26197 4.38270 4.45313 4.62464 4.66946 4.72845 4.73246 4.81688 4.86013 4.88963 4.92940 5.03138 5.07264 5.23498 5.25194 5.37842 5.46477 5.61543 5.74344 5.84212 5.92408 6.13269 6.27285 6.45789 6.55775 6.78811 6.84454 7.22288 7.80108 8.31235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.002475 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.817666 B =11312.688885 C =12623.829056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.500 5.500 3 C 0.011 3.989 4 C 0.050 3.950 5 O -0.318 6.318 6 C 0.109 3.891 7 C -0.126 4.126 8 C -0.074 4.074 9 C -0.150 4.150 10 C 0.544 3.456 11 O -0.524 6.524 12 N -0.646 5.646 13 C 0.332 3.668 14 C -0.251 4.251 15 C 0.114 3.886 16 C -0.484 4.484 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.819 5.819 20 Si 0.990 3.010 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.293 4.293 25 C 0.111 3.889 26 N -0.577 5.577 27 C -0.076 4.076 28 C 0.030 3.970 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.422 0.578 39 H 0.128 0.872 40 H 0.291 0.709 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 19.555 -8.649 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.216 5.216 3 C -0.115 4.115 4 C -0.024 4.024 5 O -0.232 6.232 6 C 0.060 3.940 7 C -0.145 4.145 8 C -0.093 4.093 9 C -0.154 4.154 10 C 0.333 3.667 11 O -0.398 6.398 12 N -0.293 5.293 13 C 0.106 3.894 14 C -0.276 4.276 15 C 0.105 3.895 16 C -0.515 4.515 17 H 0.102 0.898 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.316 4.316 25 C -0.043 4.043 26 N -0.297 5.297 27 C -0.097 4.097 28 C -0.068 4.068 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.261 0.739 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.169 0.831 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.978 19.880 -10.273 22.925 hybrid contribution 0.281 -0.889 1.835 2.058 sum 5.258 18.991 -8.439 21.436 Atomic orbital electron populations 1.22633 0.83478 1.03687 1.02670 1.58916 1.10278 1.13946 1.38412 1.23026 0.96123 0.87240 1.05131 1.23548 0.94455 1.01285 0.83115 1.86198 1.59774 1.38362 1.38867 1.19053 0.91139 0.88303 0.95487 1.20622 1.02147 0.93895 0.97865 1.21240 0.92591 0.96526 0.98959 1.19580 0.98611 0.96427 1.00802 1.18805 0.84860 0.83486 0.79540 1.90802 1.25255 1.71058 1.52725 1.43306 1.23498 1.27637 1.34851 1.18413 0.90645 0.88670 0.91671 1.21590 1.05846 0.99979 1.00233 1.18032 0.90262 0.89473 0.91693 1.19868 0.93730 1.28428 1.09463 0.89824 1.26808 0.95753 0.93973 1.01409 1.69784 1.02809 1.36079 1.35829 0.85036 0.78973 0.78431 0.76533 1.18237 1.19191 1.18614 1.22142 1.03343 1.05303 1.00839 1.22245 0.97440 0.90299 0.94266 1.67347 1.07763 1.20354 1.34266 1.20947 0.99962 0.93196 0.95633 1.18840 0.96280 0.97216 0.94442 0.87608 0.91156 0.94288 0.85034 0.92331 0.90433 0.83077 0.81753 0.83044 0.73929 0.85478 0.89760 0.86395 0.83149 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.98 127.69 1.15 1.50 16 2 N -0.50 -9.73 4.89 -719.23 -3.52 -13.25 16 3 C 0.01 0.13 5.73 86.47 0.50 0.63 16 4 C 0.05 0.59 7.25 72.12 0.52 1.11 16 5 O -0.32 -6.12 10.39 -93.66 -0.97 -7.09 16 6 C 0.11 2.51 6.48 22.72 0.15 2.66 16 7 C -0.13 -2.76 9.91 22.35 0.22 -2.54 16 8 C -0.07 -1.84 9.53 22.50 0.21 -1.63 16 9 C -0.15 -4.81 5.87 -20.13 -0.12 -4.93 16 10 C 0.54 22.50 7.72 86.71 0.67 23.17 16 11 O -0.52 -25.85 14.58 -3.96 -0.06 -25.91 16 12 N -0.65 -26.86 5.33 -311.51 -1.66 -28.52 16 13 C 0.33 16.79 7.41 132.79 0.98 17.77 16 14 C -0.25 -13.12 8.59 22.99 0.20 -12.93 16 15 C 0.11 6.14 5.58 -21.12 -0.12 6.02 16 16 C -0.48 -25.15 9.13 23.52 0.21 -24.94 16 17 H 0.08 4.17 7.87 -2.91 -0.02 4.14 16 18 C 0.04 1.76 5.30 85.29 0.45 2.21 16 19 N -0.82 -40.25 10.83 21.84 0.24 -40.01 16 20 Si 0.99 36.10 29.57 68.60 2.03 38.13 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 23 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 24 C -0.29 -14.71 9.90 22.84 0.23 -14.48 16 25 C 0.11 5.49 11.15 84.50 0.94 6.43 16 26 N -0.58 -30.69 7.85 -193.57 -1.52 -32.21 16 27 C -0.08 -2.27 8.61 22.71 0.20 -2.07 16 28 C 0.03 0.75 5.82 38.21 0.22 0.98 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.43 6.09 -2.39 -0.01 1.42 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.16 2.68 8.06 -2.92 -0.02 2.66 16 37 H 0.15 3.17 6.41 -2.91 -0.02 3.15 16 38 H 0.42 14.33 6.73 -92.70 -0.62 13.71 16 39 H 0.13 6.56 6.27 -2.91 -0.02 6.54 16 40 H 0.29 12.76 8.29 -92.70 -0.77 11.99 16 41 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 42 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 43 H 0.13 4.20 5.56 -2.91 -0.02 4.18 16 Total: -1.00 -72.75 357.95 1.61 -71.14 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.45 Total: 38.76 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.62 Total: -1.04 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -6.46 Total: -113.99 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.03 Total: -33.00 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -72.75 1.61 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588649598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.804 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds