Wall clock time and date at job start Tue Mar 31 2020 22:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40297 * 126.09318 * 2 1 4 4 C 1.31068 * 108.26823 * 180.02562 * 3 2 1 5 5 C 1.39290 * 108.08243 * 0.02562 * 4 3 2 6 6 C 1.34326 * 126.09166 * 179.97438 * 2 1 3 7 7 C 1.50830 * 128.03227 * 359.79328 * 6 2 1 8 8 C 1.53361 * 108.38153 * 196.65444 * 7 6 2 9 9 C 1.53185 * 109.47579 * 310.02700 * 8 7 6 10 10 C 1.50843 * 127.90306 * 179.88829 * 5 4 3 11 11 H 1.08997 * 109.68106 * 76.84735 * 10 5 4 12 12 N 1.46502 * 109.68228 * 316.29321 * 10 5 4 13 13 S 1.65593 * 119.99895 * 94.99646 * 12 10 5 14 14 O 1.42100 * 104.27468 * 181.06898 * 13 12 10 15 15 O 1.42095 * 104.28044 * 308.92730 * 13 12 10 16 16 C 1.81396 * 104.45059 * 65.00307 * 13 12 10 17 17 C 1.52995 * 109.47464 * 173.78488 * 16 13 12 18 18 C 1.50704 * 115.55208 * 39.91996 * 17 16 13 19 19 H 1.07993 * 119.99861 * 264.80935 * 18 17 16 20 20 C 1.37876 * 119.99813 * 84.80631 * 18 17 16 21 21 N 1.31517 * 119.99655 * 353.05248 * 20 18 17 22 22 Si 1.86800 * 120.00098 * 173.05499 * 20 18 17 23 23 H 1.48502 * 109.47071 * 59.99622 * 22 20 18 24 24 H 1.48500 * 109.47203 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46848 * 300.00090 * 22 20 18 26 26 C 1.53006 * 117.49690 * 254.21549 * 17 16 13 27 27 C 1.52998 * 59.99888 * 252.50766 * 26 17 16 28 28 H 1.08998 * 109.47289 * 90.02314 * 1 2 3 29 29 H 1.09005 * 109.46776 * 210.02620 * 1 2 3 30 30 H 1.09010 * 109.46842 * 330.01930 * 1 2 3 31 31 H 1.08006 * 125.95698 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.67838 * 316.37334 * 7 6 2 33 33 H 1.08998 * 109.68170 * 76.92483 * 7 6 2 34 34 H 1.08997 * 109.46868 * 70.06931 * 8 7 6 35 35 H 1.09003 * 109.46533 * 190.05314 * 8 7 6 36 36 H 1.08992 * 109.50350 * 310.31453 * 9 8 7 37 37 H 1.08995 * 109.45449 * 190.31339 * 9 8 7 38 38 H 0.96998 * 119.99547 * 275.00050 * 12 10 5 39 39 H 1.09005 * 109.47364 * 293.78163 * 16 13 12 40 40 H 1.09002 * 109.47281 * 53.77811 * 16 13 12 41 41 H 0.97006 * 119.99618 * 185.03412 * 21 20 18 42 42 H 1.08994 * 117.49751 * 359.97438 * 26 17 16 43 43 H 1.09006 * 117.49825 * 145.01797 * 26 17 16 44 44 H 1.09002 * 117.49723 * 252.50941 * 27 26 17 45 45 H 1.09004 * 117.49977 * 107.49324 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5455 -0.6604 -0.0015 6 6 2.2563 -1.0855 0.0005 7 6 1.8437 -2.5362 0.0054 8 6 3.0537 -3.3817 0.4212 9 6 4.2698 -2.9815 -0.4201 10 6 4.7399 -1.5817 -0.0047 11 1 5.1754 -1.6217 0.9937 12 7 5.7376 -1.0929 -0.9597 13 16 6.9812 -0.1316 -0.4386 14 8 7.7157 0.1617 -1.6192 15 8 6.3412 0.8991 0.3011 16 6 7.9479 -1.2000 0.6634 17 6 9.2216 -0.4697 1.0936 18 6 9.0587 0.9974 1.3973 19 1 9.2661 1.7330 0.6343 20 6 8.6449 1.4005 2.6492 21 7 8.2615 0.5065 3.5344 22 14 8.6287 3.2161 3.0880 23 1 7.7241 3.9415 2.1603 24 1 8.1455 3.3842 4.4821 25 1 10.0030 3.7660 2.9701 26 6 10.5409 -0.9185 0.4618 27 6 10.2396 -1.2541 1.9238 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5136 31 1 4.4106 1.3706 -0.0003 32 1 1.0308 -2.6842 0.7163 33 1 1.5170 -2.8284 -0.9926 34 1 3.2696 -3.2130 1.4762 35 1 2.8323 -4.4368 0.2600 36 1 3.9962 -2.9751 -1.4751 37 1 5.0750 -3.6979 -0.2579 38 1 5.6696 -1.3323 -1.8972 39 1 7.3546 -1.4451 1.5444 40 1 8.2146 -2.1172 0.1384 41 1 7.9016 0.7930 4.3884 42 1 10.5013 -1.7343 -0.2599 43 1 11.2912 -0.1526 0.2655 44 1 10.7918 -0.7090 2.6894 45 1 10.0019 -2.2905 2.1636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589127669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:37 Heat of formation + Delta-G solvation = 25.093224 kcal Electronic energy + Delta-G solvation = -28863.187989 eV Core-core repulsion = 25010.119198 eV Total energy + Delta-G solvation = -3853.068791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.35092 -37.16928 -36.68735 -36.02391 -34.89480 -34.23189 -32.71201 -31.99868 -29.45943 -28.35471 -28.14803 -26.50293 -25.41073 -23.08928 -21.95211 -21.16989 -20.62834 -19.68210 -18.74599 -18.43018 -17.01701 -16.76735 -16.25530 -15.92567 -15.22681 -14.95715 -14.65526 -14.56150 -14.22999 -13.94513 -13.77002 -13.66265 -13.62086 -13.03425 -12.93120 -12.86316 -12.47492 -12.18407 -11.88987 -11.79245 -11.67556 -11.12591 -11.09992 -11.03093 -10.95112 -10.86463 -10.75113 -10.51800 -10.49422 -10.38837 -10.29319 -10.05159 -9.68716 -9.20050 -9.02615 -8.87266 -8.48844 -8.09710 -8.06445 -6.11298 -4.25641 1.25098 2.01330 2.65271 3.09824 3.39223 3.41614 3.49673 3.71422 4.44201 4.44929 4.52376 4.67379 4.73307 4.81811 4.98261 5.03846 5.06829 5.19068 5.21964 5.22474 5.30189 5.33854 5.40828 5.50843 5.57662 5.68756 5.76474 5.79666 5.98918 6.04313 6.08015 6.22853 6.31101 6.37142 6.38919 6.51620 6.65456 6.73172 6.98586 7.09835 7.17114 7.21410 7.42455 7.45604 7.83387 7.98821 8.23237 8.82696 9.51564 10.96232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.004478 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.233826 B = 6251.467855 C = 7181.750871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.378 5.378 3 N -0.311 5.311 4 C 0.077 3.923 5 C -0.249 4.249 6 C 0.082 3.918 7 C -0.053 4.053 8 C -0.112 4.112 9 C -0.125 4.125 10 C 0.235 3.765 11 H 0.093 0.907 12 N -1.128 6.128 13 S 2.623 3.377 14 O -0.978 6.978 15 O -0.939 6.939 16 C -0.560 4.560 17 C 0.052 3.948 18 C -0.543 4.543 19 H 0.068 0.932 20 C 0.100 3.900 21 N -0.867 5.867 22 Si 0.889 3.111 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.206 4.206 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.209 0.791 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.265 0.735 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -11.103 -5.901 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.159 5.159 3 N -0.132 5.132 4 C -0.108 4.108 5 C -0.263 4.263 6 C -0.048 4.048 7 C -0.092 4.092 8 C -0.151 4.151 9 C -0.164 4.164 10 C 0.126 3.874 11 H 0.110 0.890 12 N -0.882 5.882 13 S 2.720 3.280 14 O -0.968 6.968 15 O -0.928 6.928 16 C -0.693 4.693 17 C 0.050 3.950 18 C -0.580 4.580 19 H 0.086 0.914 20 C -0.107 4.107 21 N -0.501 5.501 22 Si 0.715 3.285 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.243 4.243 27 C -0.184 4.184 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.240 0.760 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.869 -9.135 -5.754 18.375 hybrid contribution 0.397 -0.486 0.338 0.713 sum -14.472 -9.621 -5.416 18.203 Atomic orbital electron populations 1.21738 0.75160 1.04058 1.02854 1.48259 1.06129 1.03847 1.57678 1.77615 1.01873 1.06809 1.26856 1.24533 0.95442 0.95260 0.95561 1.20269 0.93699 0.94587 1.17696 1.20829 0.91075 0.90425 1.02451 1.20326 0.98910 0.87668 1.02313 1.21550 0.93607 0.98969 1.00959 1.21940 0.97983 0.95940 1.00515 1.18930 0.85743 0.90535 0.92221 0.88966 1.56207 1.42240 1.72372 1.17407 1.04602 0.73283 0.75264 0.74823 1.93484 1.72797 1.83390 1.47146 1.93427 1.72940 1.52563 1.73891 1.29983 1.12780 1.12062 1.14451 1.18159 0.83213 0.94027 0.99578 1.20535 1.50248 0.88802 0.98403 0.91357 1.24853 0.92618 0.97741 0.95480 1.69937 1.38907 1.33672 1.07547 0.86680 0.78707 0.85345 0.77743 1.19064 1.21098 1.20041 1.23130 1.02591 1.02477 0.96073 1.22528 1.04927 0.98429 0.92492 0.91186 0.90008 0.89506 0.77515 0.90500 0.90020 0.90784 0.90600 0.91054 0.90519 0.76030 0.85530 0.88540 0.92546 0.91288 0.89734 0.89686 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.32 59.85 0.68 1.58 16 2 N -0.38 -5.31 4.00 -63.87 -0.26 -5.57 16 3 N -0.31 -5.63 12.59 30.54 0.38 -5.25 16 4 C 0.08 1.46 11.26 -17.49 -0.20 1.27 16 5 C -0.25 -3.98 5.60 -105.05 -0.59 -4.57 16 6 C 0.08 1.08 6.73 -82.33 -0.55 0.53 16 7 C -0.05 -0.46 5.90 -27.63 -0.16 -0.62 16 8 C -0.11 -0.93 5.90 -26.45 -0.16 -1.09 16 9 C -0.12 -1.24 5.44 -26.43 -0.14 -1.39 16 10 C 0.23 3.33 2.91 -68.81 -0.20 3.13 16 11 H 0.09 1.38 7.31 -51.93 -0.38 1.00 16 12 N -1.13 -17.32 5.25 -5.65 -0.03 -17.35 16 13 S 2.62 54.12 4.56 -107.50 -0.49 53.63 16 14 O -0.98 -22.58 18.08 -57.54 -1.04 -23.62 16 15 O -0.94 -22.27 13.72 -57.54 -0.79 -23.06 16 16 C -0.56 -11.52 6.02 37.16 0.22 -11.30 16 17 C 0.05 1.26 1.64 -155.66 -0.26 1.01 16 18 C -0.54 -14.79 6.89 -34.44 -0.24 -15.03 16 19 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 20 C 0.10 2.76 5.39 -17.82 -0.10 2.66 16 21 N -0.87 -23.85 12.96 55.43 0.72 -23.13 16 22 Si 0.89 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.21 -4.46 9.88 -26.73 -0.26 -4.72 16 27 C -0.14 -3.28 9.49 -26.73 -0.25 -3.53 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.48 7.57 -51.93 -0.39 0.09 16 30 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.21 4.33 5.33 -52.48 -0.28 4.05 16 32 H 0.08 0.52 7.76 -51.93 -0.40 0.12 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 5.33 8.79 -34.47 -0.30 5.02 16 39 H 0.13 2.60 7.64 -51.92 -0.40 2.21 16 40 H 0.10 1.64 7.95 -51.92 -0.41 1.23 16 41 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 42 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -34.95 374.35 -9.85 -44.80 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.76 Total: 9.04 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.21 Total: -32.06 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.82 Total: -51.30 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.83 Total: -46.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.49 Total: 53.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.95 -9.85 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.897 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds