Wall clock time and date at job start Tue Mar 31 2020 22:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40297 * 126.09318 * 2 1 4 4 C 1.31068 * 108.26823 * 180.02562 * 3 2 1 5 5 C 1.39290 * 108.08243 * 0.02562 * 4 3 2 6 6 C 1.34326 * 126.09166 * 179.97438 * 2 1 3 7 7 C 1.50830 * 128.03227 * 359.79328 * 6 2 1 8 8 C 1.53361 * 108.38153 * 196.65444 * 7 6 2 9 9 C 1.53185 * 109.47579 * 310.02700 * 8 7 6 10 10 C 1.50843 * 127.90306 * 179.88829 * 5 4 3 11 11 H 1.08997 * 109.68106 * 76.84735 * 10 5 4 12 12 N 1.46502 * 109.68228 * 316.29321 * 10 5 4 13 13 S 1.65593 * 119.99895 * 94.99646 * 12 10 5 14 14 O 1.42100 * 104.27468 * 181.06898 * 13 12 10 15 15 O 1.42095 * 104.28044 * 308.92730 * 13 12 10 16 16 C 1.81396 * 104.45059 * 65.00307 * 13 12 10 17 17 C 1.52995 * 109.47464 * 173.78488 * 16 13 12 18 18 C 1.50704 * 115.55208 * 39.91996 * 17 16 13 19 19 H 1.07993 * 119.99861 * 264.80935 * 18 17 16 20 20 C 1.37876 * 119.99813 * 84.80631 * 18 17 16 21 21 N 1.31517 * 119.99655 * 353.05248 * 20 18 17 22 22 Si 1.86800 * 120.00098 * 173.05499 * 20 18 17 23 23 H 1.48502 * 109.47071 * 59.99622 * 22 20 18 24 24 H 1.48500 * 109.47203 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46848 * 300.00090 * 22 20 18 26 26 C 1.53006 * 117.49690 * 254.21549 * 17 16 13 27 27 C 1.52998 * 59.99888 * 252.50766 * 26 17 16 28 28 H 1.08998 * 109.47289 * 90.02314 * 1 2 3 29 29 H 1.09005 * 109.46776 * 210.02620 * 1 2 3 30 30 H 1.09010 * 109.46842 * 330.01930 * 1 2 3 31 31 H 1.08006 * 125.95698 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.67838 * 316.37334 * 7 6 2 33 33 H 1.08998 * 109.68170 * 76.92483 * 7 6 2 34 34 H 1.08997 * 109.46868 * 70.06931 * 8 7 6 35 35 H 1.09003 * 109.46533 * 190.05314 * 8 7 6 36 36 H 1.08992 * 109.50350 * 310.31453 * 9 8 7 37 37 H 1.08995 * 109.45449 * 190.31339 * 9 8 7 38 38 H 0.96998 * 119.99547 * 275.00050 * 12 10 5 39 39 H 1.09005 * 109.47364 * 293.78163 * 16 13 12 40 40 H 1.09002 * 109.47281 * 53.77811 * 16 13 12 41 41 H 0.97006 * 119.99618 * 185.03412 * 21 20 18 42 42 H 1.08994 * 117.49751 * 359.97438 * 26 17 16 43 43 H 1.09006 * 117.49825 * 145.01797 * 26 17 16 44 44 H 1.09002 * 117.49723 * 252.50941 * 27 26 17 45 45 H 1.09004 * 117.49977 * 107.49324 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0006 5 6 3.5455 -0.6604 -0.0015 6 6 2.2563 -1.0855 0.0005 7 6 1.8437 -2.5362 0.0054 8 6 3.0537 -3.3817 0.4212 9 6 4.2698 -2.9815 -0.4201 10 6 4.7399 -1.5817 -0.0047 11 1 5.1754 -1.6217 0.9937 12 7 5.7376 -1.0929 -0.9597 13 16 6.9812 -0.1316 -0.4386 14 8 7.7157 0.1617 -1.6192 15 8 6.3412 0.8991 0.3011 16 6 7.9479 -1.2000 0.6634 17 6 9.2216 -0.4697 1.0936 18 6 9.0587 0.9974 1.3973 19 1 9.2661 1.7330 0.6343 20 6 8.6449 1.4005 2.6492 21 7 8.2615 0.5065 3.5344 22 14 8.6287 3.2161 3.0880 23 1 7.7241 3.9415 2.1603 24 1 8.1455 3.3842 4.4821 25 1 10.0030 3.7660 2.9701 26 6 10.5409 -0.9185 0.4618 27 6 10.2396 -1.2541 1.9238 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5136 31 1 4.4106 1.3706 -0.0003 32 1 1.0308 -2.6842 0.7163 33 1 1.5170 -2.8284 -0.9926 34 1 3.2696 -3.2130 1.4762 35 1 2.8323 -4.4368 0.2600 36 1 3.9962 -2.9751 -1.4751 37 1 5.0750 -3.6979 -0.2579 38 1 5.6696 -1.3323 -1.8972 39 1 7.3546 -1.4451 1.5444 40 1 8.2146 -2.1172 0.1384 41 1 7.9016 0.7930 4.3884 42 1 10.5013 -1.7343 -0.2599 43 1 11.2912 -0.1526 0.2655 44 1 10.7918 -0.7090 2.6894 45 1 10.0019 -2.2905 2.1636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589127669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:34 Heat of formation + Delta-G solvation = -0.262284 kcal Electronic energy + Delta-G solvation = -28864.287486 eV Core-core repulsion = 25010.119198 eV Total energy + Delta-G solvation = -3854.168288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.44565 -38.50075 -38.19211 -37.71058 -36.60299 -35.25477 -34.07491 -33.75545 -30.41248 -29.83203 -29.36361 -27.46418 -27.39224 -24.05823 -22.93084 -22.81829 -21.79349 -21.48380 -20.15204 -19.61151 -18.46428 -18.17788 -17.91579 -16.98390 -16.78784 -16.56024 -16.38296 -15.75751 -15.49708 -15.35906 -14.99272 -14.79846 -14.63336 -14.51484 -13.90107 -13.83412 -13.71564 -13.67322 -13.35208 -13.05574 -13.02147 -12.88863 -12.78024 -12.72658 -12.52439 -12.42636 -12.04163 -11.97873 -11.80558 -11.75416 -11.58985 -11.51857 -11.42291 -10.84674 -10.52610 -10.40819 -10.13826 -9.86155 -9.21028 -8.21291 -6.37139 -0.35789 0.93161 1.34930 1.39756 1.45466 1.71274 1.79437 2.29987 2.40407 3.09178 3.12826 3.38323 3.57708 3.63649 3.77655 3.87912 4.05030 4.16041 4.18383 4.30176 4.34581 4.41029 4.47079 4.59549 4.62416 4.64164 4.64502 4.71321 4.79271 4.80221 4.89695 5.00811 5.01727 5.20218 5.23202 5.27224 5.32358 5.34364 5.44030 5.55425 5.64286 5.70792 5.76051 6.22590 6.23999 6.32763 6.70987 6.77722 7.40093 8.85323 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.004478 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.233826 B = 6251.467855 C = 7181.750871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.374 5.374 3 N -0.351 5.351 4 C 0.041 3.959 5 C -0.279 4.279 6 C 0.100 3.900 7 C -0.050 4.050 8 C -0.111 4.111 9 C -0.120 4.120 10 C 0.228 3.772 11 H 0.077 0.923 12 N -1.109 6.109 13 S 2.629 3.371 14 O -1.010 7.010 15 O -0.980 6.980 16 C -0.552 4.552 17 C 0.015 3.985 18 C -0.555 4.555 19 H 0.045 0.955 20 C 0.066 3.934 21 N -0.881 5.881 22 Si 0.920 3.080 23 H -0.282 1.282 24 H -0.274 1.274 25 H -0.264 1.264 26 C -0.192 4.192 27 C -0.140 4.140 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.420 0.580 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.265 0.735 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -14.935 -6.474 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.155 5.155 3 N -0.174 5.174 4 C -0.143 4.143 5 C -0.292 4.292 6 C -0.032 4.032 7 C -0.089 4.089 8 C -0.149 4.149 9 C -0.159 4.159 10 C 0.119 3.881 11 H 0.095 0.905 12 N -0.868 5.868 13 S 2.727 3.273 14 O -1.000 7.000 15 O -0.969 6.969 16 C -0.685 4.685 17 C 0.013 3.987 18 C -0.592 4.592 19 H 0.064 0.936 20 C -0.139 4.139 21 N -0.515 5.515 22 Si 0.745 3.255 23 H -0.208 1.208 24 H -0.198 1.198 25 H -0.189 1.189 26 C -0.229 4.229 27 C -0.179 4.179 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.255 0.745 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.840 -12.945 -6.332 22.165 hybrid contribution 0.897 0.710 0.477 1.240 sum -15.943 -12.235 -5.855 20.933 Atomic orbital electron populations 1.22215 0.72068 1.05907 1.04718 1.48675 1.07802 1.03054 1.55979 1.77470 1.02133 1.09352 1.28413 1.24242 0.95126 0.96899 0.97999 1.20510 0.95828 0.93391 1.19444 1.21605 0.89900 0.92471 0.99198 1.20618 0.99880 0.83665 1.04735 1.21615 0.92438 1.00915 0.99945 1.21983 0.99483 0.92840 1.01590 1.19213 0.84654 0.92891 0.91297 0.90501 1.55644 1.41130 1.71616 1.18368 1.04071 0.73591 0.75471 0.74122 1.93427 1.74031 1.84363 1.48194 1.93400 1.73716 1.55087 1.74715 1.29825 1.11013 1.13085 1.14561 1.18307 0.85497 0.92956 1.01947 1.20670 1.49966 0.90683 0.97892 0.93640 1.25307 0.92840 1.00043 0.95758 1.69961 1.39641 1.34295 1.07652 0.86202 0.78827 0.82770 0.77670 1.20821 1.19828 1.18868 1.23218 1.00580 1.02936 0.96189 1.22475 1.03876 0.99070 0.92505 0.89257 0.86196 0.89703 0.80897 0.87686 0.87285 0.91767 0.86885 0.89735 0.88817 0.74510 0.85787 0.84461 0.92549 0.87954 0.90377 0.91874 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.32 127.77 1.45 2.77 16 2 N -0.37 -10.02 4.00 -355.99 -1.42 -11.44 16 3 N -0.35 -13.25 12.59 -57.28 -0.72 -13.97 16 4 C 0.04 1.66 11.26 85.06 0.96 2.62 16 5 C -0.28 -8.90 5.60 -20.14 -0.11 -9.01 16 6 C 0.10 2.43 6.73 41.64 0.28 2.71 16 7 C -0.05 -0.61 5.90 30.01 0.18 -0.43 16 8 C -0.11 -1.30 5.90 30.78 0.18 -1.12 16 9 C -0.12 -1.95 5.44 30.79 0.17 -1.79 16 10 C 0.23 6.28 2.91 44.42 0.13 6.41 16 11 H 0.08 2.32 7.31 -2.39 -0.02 2.30 16 12 N -1.11 -33.88 5.25 -171.78 -0.90 -34.78 16 13 S 2.63 111.55 4.56 -56.49 -0.26 111.30 16 14 O -1.01 -47.83 18.08 -127.65 -2.31 -50.14 16 15 O -0.98 -49.69 13.72 -127.65 -1.75 -51.44 16 16 C -0.55 -22.33 6.02 71.98 0.43 -21.89 16 17 C 0.01 0.72 1.64 -52.93 -0.09 0.63 16 18 C -0.55 -31.19 6.89 25.60 0.18 -31.01 16 19 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 20 C 0.07 3.71 5.39 84.65 0.46 4.17 16 21 N -0.88 -49.42 12.96 21.45 0.28 -49.14 16 22 Si 0.92 46.18 29.55 68.60 2.03 48.21 16 23 H -0.28 -14.83 7.11 99.48 0.71 -14.12 16 24 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 C -0.19 -8.07 9.88 30.60 0.30 -7.77 16 27 C -0.14 -6.22 9.49 30.59 0.29 -5.93 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.12 0.85 7.57 -2.38 -0.02 0.83 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.17 8.09 5.33 -2.91 -0.02 8.07 16 32 H 0.10 0.77 7.76 -2.39 -0.02 0.75 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 10.63 8.79 -96.75 -0.85 9.78 16 39 H 0.12 5.08 7.64 -2.39 -0.02 5.06 16 40 H 0.14 4.30 7.95 -2.39 -0.02 4.28 16 41 H 0.27 14.34 8.32 -92.70 -0.77 13.56 16 42 H 0.10 3.59 8.08 -2.39 -0.02 3.57 16 43 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 44 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -81.81 374.35 -0.11 -81.91 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.16 Total: 29.16 kcal Atomic # 6 Polarization: -64.46 SS G_CDS: 4.80 Total: -59.66 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -2.77 Total: -109.33 kcal Atomic # 8 Polarization: -97.52 SS G_CDS: -4.06 Total: -101.58 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: 111.55 SS G_CDS: -0.26 Total: 111.30 kcal Total: -81.81 -0.11 -81.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.651 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds