Wall clock time and date at job start Tue Mar 31 2020 22:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.47062 * 2 1 4 4 C 1.34792 * 116.99686 * 180.02562 * 3 2 1 5 5 O 1.21555 * 120.00505 * 0.02562 * 4 3 2 6 6 C 1.47113 * 119.99982 * 180.02562 * 4 3 2 7 7 C 1.35291 * 123.15837 * 179.97438 * 6 4 3 8 8 S 1.70937 * 108.82299 * 180.02562 * 7 6 4 9 9 C 1.70765 * 91.13653 * 0.02562 * 8 7 6 10 10 C 1.50699 * 124.70834 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47140 * 270.02117 * 10 9 8 12 12 C 1.46951 * 111.00081 * 293.80060 * 11 10 9 13 13 C 1.53045 * 109.36542 * 176.80928 * 12 11 10 14 14 N 1.46956 * 109.36490 * 58.40251 * 13 12 11 15 15 C 1.46896 * 111.00231 * 176.81047 * 14 13 12 16 16 C 1.50702 * 109.47333 * 293.79945 * 15 14 13 17 17 H 1.07997 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00182 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99931 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46893 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46940 * 119.99596 * 20 18 16 23 23 H 1.48497 * 109.47270 * 239.99877 * 20 18 16 24 24 C 1.46954 * 110.88190 * 300.68146 * 14 13 12 25 25 C 1.46953 * 110.99875 * 170.00105 * 11 10 9 26 26 N 1.28618 * 110.58393 * 0.26133 * 9 8 7 27 27 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46963 * 299.99914 * 1 2 3 29 29 H 1.09003 * 109.47039 * 59.99337 * 1 2 3 30 30 H 1.08999 * 109.46780 * 240.00589 * 2 1 3 31 31 H 1.08996 * 109.47447 * 120.00145 * 2 1 3 32 32 H 1.08006 * 125.58584 * 0.03722 * 7 6 4 33 33 H 1.09004 * 109.47103 * 150.02217 * 10 9 8 34 34 H 1.09000 * 109.47247 * 30.02095 * 10 9 8 35 35 H 1.09005 * 109.48678 * 296.77705 * 12 11 10 36 36 H 1.09004 * 109.48825 * 56.84230 * 12 11 10 37 37 H 1.08998 * 109.49025 * 298.43470 * 13 12 11 38 38 H 1.09007 * 109.49248 * 178.36674 * 13 12 11 39 39 H 1.08998 * 109.47493 * 53.80015 * 15 14 13 40 40 H 1.09007 * 109.47227 * 173.79659 * 15 14 13 41 41 H 0.96994 * 119.99782 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.48381 * 299.35289 * 24 14 13 43 43 H 1.08996 * 109.49567 * 179.29237 * 24 14 13 44 44 H 1.09003 * 109.48921 * 303.15321 * 25 11 10 45 45 H 1.09004 * 109.49415 * 63.22045 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5456 -0.0005 5 8 4.0909 0.5816 -0.0015 6 6 3.9127 2.9050 0.0000 7 6 5.2422 3.1558 0.0000 8 16 5.4841 4.8480 0.0014 9 6 3.7988 5.1232 0.0027 10 6 3.1516 6.4841 0.0038 11 7 2.9427 6.9259 1.3892 12 6 1.9586 6.0738 2.0709 13 6 1.8288 6.5161 3.5303 14 7 1.4215 7.9273 3.5774 15 6 1.2126 8.3691 4.9627 16 6 0.0324 7.6390 5.5503 17 1 -0.5086 6.9191 4.9540 18 6 -0.3573 7.8907 6.8487 19 7 0.3013 8.7677 7.5745 20 14 -1.8206 6.9863 7.5767 21 1 -2.3842 6.0595 6.5625 22 1 -1.3821 6.2113 8.7651 23 1 -2.8582 7.9685 7.9814 24 6 2.4056 8.7795 2.8956 25 6 2.5354 8.3371 1.4361 26 7 3.1585 4.0078 0.0075 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.0226 2.4092 -0.0009 33 1 2.1913 6.4302 -0.5091 34 1 3.7988 7.1947 -0.5105 35 1 0.9921 6.1665 1.5755 36 1 2.2886 5.0356 2.0336 37 1 2.7887 6.3977 4.0329 38 1 1.0781 5.9041 4.0305 39 1 2.1038 8.1522 5.5516 40 1 1.0200 9.4419 4.9769 41 1 0.0269 8.9451 8.4878 42 1 3.3721 8.6868 3.3910 43 1 2.0756 9.8177 2.9330 44 1 3.2861 8.9491 0.9361 45 1 1.5755 8.4556 0.9335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590115443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:45 Heat of formation + Delta-G solvation = -48.177454 kcal Electronic energy + Delta-G solvation = -26921.815998 eV Core-core repulsion = 23065.569952 eV Total energy + Delta-G solvation = -3856.246046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.90423 -40.67830 -39.87634 -37.79402 -36.78219 -34.65010 -32.83792 -32.35497 -31.78272 -30.18762 -28.31678 -27.18557 -25.73521 -24.54061 -23.86970 -23.28186 -22.41689 -21.05530 -20.64324 -20.04208 -18.49853 -18.07264 -17.79581 -17.49629 -17.37914 -16.56231 -16.28948 -16.04173 -15.81628 -15.71340 -15.36706 -15.07102 -14.90987 -14.61176 -14.46005 -14.15576 -13.81281 -13.68926 -13.44825 -13.09372 -13.01348 -12.99719 -12.89363 -12.71484 -12.57183 -12.42275 -12.27241 -12.12330 -11.97553 -11.89606 -11.60412 -11.54499 -11.18778 -10.86216 -10.74561 -10.62642 -10.05005 -9.42559 -9.02361 -8.21772 -6.31621 -0.67325 0.17350 0.47435 0.56557 1.39572 1.39881 1.53740 1.64568 1.93083 2.39318 2.75597 3.05725 3.10529 3.30715 3.60127 3.94608 3.95490 3.98711 4.00839 4.08694 4.17820 4.22364 4.27936 4.36989 4.49626 4.51975 4.58031 4.67561 4.70663 4.83452 4.86932 4.90784 4.97723 5.04094 5.05047 5.06212 5.21545 5.29175 5.30395 5.63381 5.89191 5.97739 6.05426 6.25498 6.32716 6.64185 6.64815 6.84400 7.38130 8.89542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003031 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.346437 B = 9235.964021 C =11349.745248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.547 3.453 5 O -0.525 6.525 6 C -0.009 4.009 7 C -0.227 4.227 8 S 0.341 5.659 9 C 0.013 3.987 10 C 0.129 3.871 11 N -0.540 5.540 12 C 0.078 3.922 13 C 0.074 3.926 14 N -0.545 5.545 15 C 0.210 3.790 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.275 1.275 24 C 0.052 3.948 25 C 0.072 3.928 26 N -0.450 5.450 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.208 0.792 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.014 0.986 38 H 0.060 0.940 39 H -0.041 1.041 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -10.555 -21.593 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.390 3.610 5 O -0.415 6.415 6 C -0.144 4.144 7 C -0.370 4.370 8 S 0.600 5.400 9 C -0.267 4.267 10 C -0.001 4.001 11 N -0.266 5.266 12 C -0.050 4.050 13 C -0.055 4.055 14 N -0.271 5.271 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.077 4.077 25 C -0.055 4.055 26 N -0.166 5.166 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.224 0.776 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.078 0.922 39 H -0.023 1.023 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.095 0.905 44 H 0.135 0.865 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.705 -10.112 -21.434 26.005 hybrid contribution -1.192 -1.552 1.152 2.271 sum 9.513 -11.664 -20.281 25.256 Atomic orbital electron populations 1.21831 0.90702 1.04477 1.03442 1.23393 0.96988 0.78632 1.03017 1.86708 1.22682 1.34038 1.83062 1.20084 0.81104 0.87877 0.71921 1.90839 1.61038 1.41821 1.47843 1.19256 0.90065 0.91191 1.13855 1.27084 0.99988 1.05287 1.04640 1.82631 1.04766 0.93256 1.59338 1.27232 0.96887 0.98127 1.04439 1.20769 1.01001 0.88285 0.90006 1.62152 1.46355 1.03528 1.14558 1.21955 0.93598 0.96590 0.92864 1.21894 0.97415 0.90232 0.95960 1.62212 1.44682 1.02528 1.17634 1.19337 0.94015 0.94850 0.83449 1.21482 1.13898 1.23319 0.97498 0.92267 1.25887 1.00005 0.96188 0.97443 1.70084 1.42124 1.35392 1.09784 0.85363 0.78800 0.78477 0.78171 1.18959 1.20421 1.20093 1.22218 0.93264 0.97312 0.94879 1.22163 1.00666 0.87515 0.95185 1.66972 1.38208 0.97338 1.14078 0.87554 0.92106 0.91367 0.90307 0.91033 0.77552 0.91412 0.84550 0.94610 0.90913 0.96808 0.92192 1.02294 0.97409 0.92641 0.95735 0.90498 0.86477 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.29 71.98 0.74 -1.48 16 2 C 0.05 1.04 6.20 71.98 0.45 1.48 16 3 O -0.35 -9.38 10.16 -57.04 -0.58 -9.96 16 4 C 0.55 15.07 7.94 70.15 0.56 15.63 16 5 O -0.52 -15.34 16.51 19.66 0.32 -15.02 16 6 C -0.01 -0.23 6.71 40.52 0.27 0.04 16 7 C -0.23 -4.17 10.62 67.14 0.71 -3.46 16 8 S 0.34 4.82 22.92 -56.49 -1.29 3.53 16 9 C 0.01 0.26 6.02 88.58 0.53 0.79 16 10 C 0.13 2.40 5.54 85.56 0.47 2.87 16 11 N -0.54 -13.83 4.70 -900.27 -4.23 -18.06 16 12 C 0.08 2.57 5.43 86.31 0.47 3.04 16 13 C 0.07 3.05 5.43 86.31 0.47 3.52 16 14 N -0.55 -24.13 4.70 -900.28 -4.23 -28.36 16 15 C 0.21 11.45 4.72 85.56 0.40 11.85 16 16 C -0.52 -30.43 8.47 25.60 0.22 -30.21 16 17 H 0.06 3.42 7.13 -2.91 -0.02 3.40 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 20 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 C 0.05 1.79 5.61 86.31 0.48 2.27 16 25 C 0.07 1.78 5.61 86.31 0.48 2.27 16 26 N -0.45 -11.75 9.70 -180.91 -1.75 -13.51 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.21 2.95 8.03 -2.91 -0.02 2.93 16 33 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 34 H 0.14 1.46 8.03 -2.39 -0.02 1.44 16 35 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 2.43 6.53 -2.39 -0.02 2.41 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.06 2.75 6.79 -2.38 -0.02 2.73 16 39 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 40 H 0.01 0.45 8.03 -2.38 -0.02 0.43 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 44 H 0.12 1.96 8.07 -2.39 -0.02 1.94 16 45 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -74.21 385.35 -1.75 -75.96 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.98 Total: 5.57 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.72 Total: 9.25 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -9.93 Total: -116.48 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.25 Total: -24.98 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.29 Total: 3.53 kcal Total: -74.21 -1.75 -75.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590115443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.786 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds