Wall clock time and date at job start Tue Mar 31 2020 23:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35934 * 117.00427 * 2 1 4 4 C 1.38657 * 119.99810 * 359.97438 * 3 2 1 5 5 C 1.38731 * 119.89469 * 180.02562 * 4 3 2 6 6 N 1.39835 * 120.04515 * 179.97438 * 5 4 3 7 7 C 1.46955 * 111.00282 * 63.81646 * 6 5 4 8 8 C 1.53057 * 109.36205 * 176.81095 * 7 6 5 9 9 N 1.46958 * 109.36303 * 58.39883 * 8 7 6 10 10 C 1.46903 * 110.99770 * 176.80833 * 9 8 7 11 11 C 1.50701 * 109.46620 * 58.98267 * 10 9 8 12 12 H 1.08003 * 120.00396 * 5.00290 * 11 10 9 13 13 C 1.37881 * 119.99880 * 185.01060 * 11 10 9 14 14 N 1.31514 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47531 * 59.99802 * 15 13 11 17 17 H 1.48509 * 109.46763 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47178 * 299.99483 * 15 13 11 19 19 C 1.46955 * 110.88432 * 300.67795 * 9 8 7 20 20 C 1.46958 * 110.99608 * 300.01267 * 6 5 4 21 21 C 1.39120 * 119.90130 * 359.97438 * 5 4 3 22 22 F 1.35094 * 120.00264 * 179.72801 * 21 5 4 23 23 C 1.38234 * 119.99652 * 0.02562 * 21 5 4 24 24 C 1.38283 * 120.10457 * 359.96862 * 23 21 5 25 25 N 1.48029 * 119.95068 * 180.02562 * 24 23 21 26 26 O 1.21804 * 119.99773 * 0.02689 * 25 24 23 27 27 O 1.21791 * 120.00171 * 180.02562 * 25 24 23 28 28 H 1.08997 * 109.46839 * 60.00061 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47023 * 300.00523 * 1 2 3 31 31 H 1.07999 * 120.04697 * 359.97424 * 4 3 2 32 32 H 1.08994 * 109.49007 * 296.77663 * 7 6 5 33 33 H 1.08999 * 109.49124 * 56.84720 * 7 6 5 34 34 H 1.08996 * 109.48546 * 298.43212 * 8 7 6 35 35 H 1.08992 * 109.50393 * 178.38013 * 8 7 6 36 36 H 1.09001 * 109.47069 * 178.97946 * 10 9 8 37 37 H 1.09004 * 109.47152 * 298.98426 * 10 9 8 38 38 H 0.96997 * 120.00808 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.48564 * 299.35869 * 19 9 8 40 40 H 1.08990 * 109.48869 * 179.28572 * 19 9 8 41 41 H 1.08999 * 109.49342 * 303.15836 * 20 6 5 42 42 H 1.08999 * 109.48520 * 63.20671 * 20 6 5 43 43 H 1.08003 * 119.94996 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2911 2.3740 -0.0005 5 6 1.9232 3.6090 -0.0011 6 7 1.1648 4.7837 -0.0022 7 6 0.3700 4.8987 1.2286 8 6 -0.3822 6.2317 1.2242 9 7 -1.2439 6.3010 0.0358 10 6 -2.0406 7.5352 0.0346 11 6 -1.1195 8.7277 0.0591 12 1 -0.0509 8.5861 -0.0075 13 6 -1.6410 9.9995 0.1667 14 7 -2.9423 10.1720 0.2475 15 14 -0.4994 11.4777 0.1963 16 1 0.2900 11.5189 -1.0608 17 1 -1.3025 12.7210 0.3169 18 1 0.4218 11.3685 1.3559 19 6 -0.4491 6.1861 -1.1950 20 6 0.3031 4.8531 -1.1906 21 6 3.3128 3.6768 -0.0005 22 9 3.9305 4.8782 -0.0066 23 6 4.0614 2.5147 0.0000 24 6 3.4313 1.2837 0.0007 25 7 4.2364 0.0415 0.0018 26 8 5.4528 0.1041 0.0027 27 8 3.6824 -1.0432 0.0019 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2125 2.3184 -0.0014 32 1 -0.3453 4.0777 1.2776 33 1 1.0315 4.8573 2.0939 34 1 0.3338 7.0531 1.2027 35 1 -0.9949 6.3067 2.1225 36 1 -2.6558 7.5697 -0.8646 37 1 -2.6828 7.5540 0.9152 38 1 -3.3093 11.0667 0.3228 39 1 0.2662 7.0071 -1.2439 40 1 -1.1106 6.2275 -2.0602 41 1 0.9158 4.7785 -2.0890 42 1 -0.4127 4.0313 -1.1692 43 1 5.1401 2.5682 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:47 Heat of formation + Delta-G solvation = -30.969602 kcal Electronic energy + Delta-G solvation = -29980.819018 eV Core-core repulsion = 25559.105985 eV Total energy + Delta-G solvation = -4421.713033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.10872 -42.38244 -40.92579 -39.41902 -37.71689 -36.59222 -35.46745 -32.68605 -31.26060 -30.71491 -30.66636 -28.23887 -27.94526 -26.13809 -24.70342 -23.39127 -23.29187 -22.47528 -21.68513 -19.89021 -19.50690 -18.85479 -18.39067 -17.74220 -17.41607 -17.05064 -16.46899 -16.40919 -15.91660 -15.87836 -15.14424 -15.00797 -14.84753 -14.48496 -14.46790 -14.13684 -13.62720 -13.46830 -13.11919 -13.08562 -12.50614 -12.30038 -12.23290 -11.97297 -11.66319 -11.60337 -11.25682 -11.24974 -11.21467 -11.07669 -11.00786 -10.79459 -10.59627 -10.31532 -9.99501 -9.88487 -9.71800 -8.90507 -8.82079 -8.52631 -7.39252 -6.12924 -4.22361 -0.50339 0.39479 1.00371 1.14487 2.39237 2.62106 3.23322 3.26054 3.28576 3.31456 3.61778 3.84889 4.10572 4.32907 4.33239 4.59930 4.65561 4.69079 4.74621 4.78700 5.01432 5.07239 5.11947 5.15995 5.19095 5.32501 5.40236 5.54909 5.59258 5.73749 5.85697 5.97068 6.11094 6.34405 6.43003 6.53543 6.62518 6.72130 6.90150 7.10011 7.39318 7.53109 7.77146 7.85498 8.06192 8.15903 8.87146 9.45448 10.92547 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.002735 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.400493 B =10234.190094 C =11203.207838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.280 6.280 3 C 0.199 3.801 4 C -0.220 4.220 5 C 0.165 3.835 6 N -0.505 5.505 7 C 0.063 3.937 8 C 0.064 3.936 9 N -0.544 5.544 10 C 0.188 3.812 11 C -0.554 4.554 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.063 3.937 20 C 0.063 3.937 21 C 0.091 3.909 22 F -0.108 7.108 23 C -0.056 4.056 24 C -0.067 4.067 25 N 0.039 4.961 26 O -0.177 6.177 27 O -0.135 6.135 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 -18.491 -0.466 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.190 6.190 3 C 0.148 3.852 4 C -0.241 4.241 5 C 0.069 3.931 6 N -0.228 5.228 7 C -0.062 4.062 8 C -0.065 4.065 9 N -0.268 5.268 10 C 0.063 3.937 11 C -0.593 4.593 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.066 4.066 20 C -0.063 4.063 21 C 0.070 3.930 22 F -0.086 7.086 23 C -0.076 4.076 24 C -0.152 4.152 25 N 0.558 4.442 26 O -0.387 6.387 27 O -0.356 6.356 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.231 -17.857 -0.449 19.270 hybrid contribution 0.659 1.119 0.012 1.298 sum 7.890 -16.738 -0.437 18.509 Atomic orbital electron populations 1.23366 0.76702 1.05459 1.02212 1.86415 1.22627 1.23956 1.86006 1.18487 0.89220 0.86359 0.91129 1.21826 1.02003 0.90658 1.09611 1.19181 0.92016 0.90177 0.91726 1.60011 1.27464 1.30087 1.05210 1.22441 0.94623 0.99746 0.89424 1.21942 0.95553 0.93996 0.94972 1.62750 1.23066 1.40536 1.00477 1.19733 0.92537 0.83342 0.98072 1.21701 0.93684 0.92098 1.51787 0.92312 1.24953 0.94940 0.99031 0.94719 1.69922 1.10836 1.22666 1.49470 0.86692 0.80808 0.82020 0.78747 1.20197 1.21190 1.20178 1.21956 0.96051 0.94131 0.94509 1.22429 0.93745 0.99683 0.90418 1.16990 0.88781 0.80929 1.06344 1.91604 1.82049 1.41329 1.93647 1.20673 1.02794 0.88108 0.96016 1.20046 0.87899 0.85501 1.21763 1.43178 1.01077 1.02164 0.97806 1.94543 0.95444 1.93883 1.54825 1.94588 1.74172 1.14593 1.52217 0.91716 0.86786 0.91699 0.82101 0.93711 0.90598 0.92614 0.90509 0.95340 0.94608 0.92657 0.92867 0.90580 0.90611 0.93704 0.80946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.28 -2.72 8.49 -41.71 -0.35 -3.08 16 3 C 0.20 2.03 6.67 -39.25 -0.26 1.77 16 4 C -0.22 -2.09 7.63 -39.24 -0.30 -2.39 16 5 C 0.17 1.88 4.73 -83.70 -0.40 1.49 16 6 N -0.51 -6.77 4.51 -170.89 -0.77 -7.54 16 7 C 0.06 0.85 5.36 -3.76 -0.02 0.83 16 8 C 0.06 1.12 5.24 -3.76 -0.02 1.10 16 9 N -0.54 -10.40 4.92 -235.91 -1.16 -11.56 16 10 C 0.19 4.50 5.14 -4.97 -0.03 4.47 16 11 C -0.55 -14.40 7.66 -34.44 -0.26 -14.67 16 12 H 0.06 1.53 5.82 -52.48 -0.31 1.22 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.06 1.07 5.32 -3.76 -0.02 1.05 16 20 C 0.06 0.84 5.31 -3.76 -0.02 0.82 16 21 C 0.09 1.04 7.31 -39.26 -0.29 0.75 16 22 F -0.11 -1.42 17.07 2.25 0.04 -1.38 16 23 C -0.06 -0.57 9.52 -39.57 -0.38 -0.95 16 24 C -0.07 -0.76 6.87 -79.75 -0.55 -1.31 16 25 N 0.04 0.52 4.45 34.06 0.15 0.67 16 26 O -0.18 -2.39 18.44 -29.46 -0.54 -2.93 16 27 O -0.13 -1.87 17.23 -36.51 -0.63 -2.50 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 31 H 0.16 1.28 5.29 -52.49 -0.28 1.00 16 32 H 0.04 0.55 7.44 -51.93 -0.39 0.16 16 33 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.06 1.11 6.62 -51.93 -0.34 0.77 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 40 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 41 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.04 0.54 7.24 -51.93 -0.38 0.16 16 43 H 0.17 1.49 7.60 -52.48 -0.40 1.09 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -29.71 358.63 -9.12 -38.83 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.33 Total: -2.99 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.64 Total: -4.23 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.04 Total: -42.94 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.53 Total: -8.51 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.71 -9.12 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.861 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds