Wall clock time and date at job start Tue Mar 31 2020 23:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35934 * 117.00427 * 2 1 4 4 C 1.38657 * 119.99810 * 359.97438 * 3 2 1 5 5 C 1.38731 * 119.89469 * 180.02562 * 4 3 2 6 6 N 1.39835 * 120.04515 * 179.97438 * 5 4 3 7 7 C 1.46955 * 111.00282 * 63.81646 * 6 5 4 8 8 C 1.53057 * 109.36205 * 176.81095 * 7 6 5 9 9 N 1.46958 * 109.36303 * 58.39883 * 8 7 6 10 10 C 1.46903 * 110.99770 * 176.80833 * 9 8 7 11 11 C 1.50701 * 109.46620 * 58.98267 * 10 9 8 12 12 H 1.08003 * 120.00396 * 5.00290 * 11 10 9 13 13 C 1.37881 * 119.99880 * 185.01060 * 11 10 9 14 14 N 1.31514 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47531 * 59.99802 * 15 13 11 17 17 H 1.48509 * 109.46763 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47178 * 299.99483 * 15 13 11 19 19 C 1.46955 * 110.88432 * 300.67795 * 9 8 7 20 20 C 1.46958 * 110.99608 * 300.01267 * 6 5 4 21 21 C 1.39120 * 119.90130 * 359.97438 * 5 4 3 22 22 F 1.35094 * 120.00264 * 179.72801 * 21 5 4 23 23 C 1.38234 * 119.99652 * 0.02562 * 21 5 4 24 24 C 1.38283 * 120.10457 * 359.96862 * 23 21 5 25 25 N 1.48029 * 119.95068 * 180.02562 * 24 23 21 26 26 O 1.21804 * 119.99773 * 0.02689 * 25 24 23 27 27 O 1.21791 * 120.00171 * 180.02562 * 25 24 23 28 28 H 1.08997 * 109.46839 * 60.00061 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47023 * 300.00523 * 1 2 3 31 31 H 1.07999 * 120.04697 * 359.97424 * 4 3 2 32 32 H 1.08994 * 109.49007 * 296.77663 * 7 6 5 33 33 H 1.08999 * 109.49124 * 56.84720 * 7 6 5 34 34 H 1.08996 * 109.48546 * 298.43212 * 8 7 6 35 35 H 1.08992 * 109.50393 * 178.38013 * 8 7 6 36 36 H 1.09001 * 109.47069 * 178.97946 * 10 9 8 37 37 H 1.09004 * 109.47152 * 298.98426 * 10 9 8 38 38 H 0.96997 * 120.00808 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.48564 * 299.35869 * 19 9 8 40 40 H 1.08990 * 109.48869 * 179.28572 * 19 9 8 41 41 H 1.08999 * 109.49342 * 303.15836 * 20 6 5 42 42 H 1.08999 * 109.48520 * 63.20671 * 20 6 5 43 43 H 1.08003 * 119.94996 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2911 2.3740 -0.0005 5 6 1.9232 3.6090 -0.0011 6 7 1.1648 4.7837 -0.0022 7 6 0.3700 4.8987 1.2286 8 6 -0.3822 6.2317 1.2242 9 7 -1.2439 6.3010 0.0358 10 6 -2.0406 7.5352 0.0346 11 6 -1.1195 8.7277 0.0591 12 1 -0.0509 8.5861 -0.0075 13 6 -1.6410 9.9995 0.1667 14 7 -2.9423 10.1720 0.2475 15 14 -0.4994 11.4777 0.1963 16 1 0.2900 11.5189 -1.0608 17 1 -1.3025 12.7210 0.3169 18 1 0.4218 11.3685 1.3559 19 6 -0.4491 6.1861 -1.1950 20 6 0.3031 4.8531 -1.1906 21 6 3.3128 3.6768 -0.0005 22 9 3.9305 4.8782 -0.0066 23 6 4.0614 2.5147 0.0000 24 6 3.4313 1.2837 0.0007 25 7 4.2364 0.0415 0.0018 26 8 5.4528 0.1041 0.0027 27 8 3.6824 -1.0432 0.0019 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2125 2.3184 -0.0014 32 1 -0.3453 4.0777 1.2776 33 1 1.0315 4.8573 2.0939 34 1 0.3338 7.0531 1.2027 35 1 -0.9949 6.3067 2.1225 36 1 -2.6558 7.5697 -0.8646 37 1 -2.6828 7.5540 0.9152 38 1 -3.3093 11.0667 0.3228 39 1 0.2662 7.0071 -1.2439 40 1 -1.1106 6.2275 -2.0602 41 1 0.9158 4.7785 -2.0890 42 1 -0.4127 4.0313 -1.1692 43 1 5.1401 2.5682 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:46 Heat of formation + Delta-G solvation = -49.216432 kcal Electronic energy + Delta-G solvation = -29981.610260 eV Core-core repulsion = 25559.105985 eV Total energy + Delta-G solvation = -4422.504275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03362 -43.31768 -41.80302 -40.42583 -38.72670 -37.58762 -36.77506 -34.57511 -32.36456 -31.94869 -31.44606 -29.65253 -28.55527 -27.55846 -26.07611 -24.56501 -24.28597 -23.64028 -22.98919 -20.90772 -20.71010 -19.85769 -19.22878 -18.68381 -18.54099 -18.13562 -17.97223 -17.16038 -17.04228 -16.70067 -16.58799 -15.99742 -15.87775 -15.85325 -15.73714 -15.21513 -14.90585 -14.72717 -14.29232 -13.79676 -13.76883 -13.59222 -13.42711 -13.01393 -12.84800 -12.79376 -12.67390 -12.60351 -12.32679 -12.25372 -12.23665 -12.15670 -12.11572 -11.87595 -11.83205 -11.48125 -10.74903 -10.61703 -9.83303 -9.70097 -9.09052 -8.17906 -6.36204 -1.41340 -0.38754 0.05167 0.24391 1.36546 1.36913 1.45020 1.74940 1.79615 2.29016 2.35867 2.77093 3.08043 3.08939 3.26966 3.35548 3.50696 3.77267 3.95069 4.02992 4.07895 4.21094 4.21858 4.30717 4.33798 4.36678 4.38200 4.55487 4.63559 4.73074 4.74634 4.86203 5.02372 5.06221 5.16749 5.19392 5.23063 5.32774 5.64887 5.70613 5.75401 5.92537 6.01908 6.20857 6.44882 6.50721 6.84109 7.35420 8.84555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.002735 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.400493 B =10234.190094 C =11203.207838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.294 6.294 3 C 0.208 3.792 4 C -0.203 4.203 5 C 0.164 3.836 6 N -0.521 5.521 7 C 0.074 3.926 8 C 0.065 3.935 9 N -0.536 5.536 10 C 0.201 3.799 11 C -0.556 4.556 12 H 0.055 0.945 13 C 0.016 3.984 14 N -0.924 5.924 15 Si 0.951 3.049 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.063 3.937 20 C 0.073 3.927 21 C 0.081 3.919 22 F -0.122 7.122 23 C -0.043 4.043 24 C -0.078 4.078 25 N 0.040 4.960 26 O -0.189 6.189 27 O -0.154 6.154 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.184 0.816 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.007 0.993 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.022 0.978 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -19.853 -0.528 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.204 6.204 3 C 0.157 3.843 4 C -0.224 4.224 5 C 0.068 3.932 6 N -0.244 5.244 7 C -0.051 4.051 8 C -0.064 4.064 9 N -0.260 5.260 10 C 0.075 3.925 11 C -0.595 4.595 12 H 0.073 0.927 13 C -0.184 4.184 14 N -0.564 5.564 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.066 4.066 20 C -0.052 4.052 21 C 0.060 3.940 22 F -0.100 7.100 23 C -0.063 4.063 24 C -0.163 4.163 25 N 0.555 4.445 26 O -0.397 6.397 27 O -0.372 6.372 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.201 0.799 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.696 -19.266 -0.513 20.753 hybrid contribution 0.473 1.480 0.026 1.554 sum 8.169 -17.786 -0.486 19.578 Atomic orbital electron populations 1.23723 0.74492 1.07168 1.03440 1.86428 1.24922 1.23688 1.85396 1.18526 0.88846 0.86927 0.90042 1.21867 1.02808 0.89342 1.08385 1.19080 0.91633 0.89957 0.92577 1.59838 1.27714 1.31831 1.05015 1.22298 0.94989 0.97618 0.90214 1.21932 0.94741 0.95690 0.94000 1.62674 1.23797 1.37404 1.02129 1.19382 0.92392 0.85067 0.95688 1.21951 0.93754 0.93009 1.50821 0.92721 1.25729 0.96259 1.01829 0.94606 1.70031 1.12396 1.23277 1.50708 0.85716 0.78970 0.78814 0.78851 1.19727 1.20743 1.19689 1.21970 0.95391 0.95767 0.93468 1.22308 0.94100 0.97600 0.91211 1.17054 0.88945 0.80656 1.07386 1.91572 1.82350 1.42169 1.93917 1.20694 1.03384 0.87354 0.94840 1.20164 0.88358 0.84801 1.23007 1.43399 1.01105 1.02625 0.97372 1.94530 0.95993 1.94072 1.55116 1.94578 1.74133 1.15412 1.53032 0.90389 0.85098 0.90423 0.79919 0.91389 0.89170 0.95750 0.90911 0.97508 0.97138 0.92589 0.95932 0.90601 0.89036 0.91318 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.29 -4.87 8.49 -71.60 -0.61 -5.48 16 3 C 0.21 3.64 6.67 22.48 0.15 3.79 16 4 C -0.20 -3.09 7.63 22.49 0.17 -2.92 16 5 C 0.16 3.24 4.73 38.19 0.18 3.42 16 6 N -0.52 -12.69 4.51 -694.58 -3.14 -15.83 16 7 C 0.07 1.81 5.36 86.31 0.46 2.28 16 8 C 0.07 2.24 5.24 86.31 0.45 2.69 16 9 N -0.54 -20.42 4.92 -900.28 -4.43 -24.85 16 10 C 0.20 9.89 5.14 85.56 0.44 10.33 16 11 C -0.56 -29.59 7.66 25.60 0.20 -29.39 16 12 H 0.05 2.91 5.82 -2.91 -0.02 2.89 16 13 C 0.02 0.85 5.46 84.66 0.46 1.31 16 14 N -0.92 -53.39 13.29 21.45 0.28 -53.10 16 15 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.06 2.12 5.32 86.31 0.46 2.58 16 20 C 0.07 1.76 5.31 86.31 0.46 2.21 16 21 C 0.08 1.68 7.31 22.48 0.16 1.85 16 22 F -0.12 -3.04 17.07 44.97 0.77 -2.27 16 23 C -0.04 -0.79 9.52 22.28 0.21 -0.58 16 24 C -0.08 -1.60 6.87 36.50 0.25 -1.35 16 25 N 0.04 1.01 4.45 -46.16 -0.21 0.80 16 26 O -0.19 -4.90 18.44 18.88 0.35 -4.55 16 27 O -0.15 -4.12 17.23 25.64 0.44 -3.67 16 28 H 0.08 0.42 7.66 -2.39 -0.02 0.40 16 29 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.43 7.66 -2.39 -0.02 0.41 16 31 H 0.18 1.98 5.29 -2.91 -0.02 1.96 16 32 H 0.07 1.38 7.44 -2.39 -0.02 1.36 16 33 H 0.09 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.02 0.99 6.62 -2.39 -0.02 0.97 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.01 0.36 8.12 -2.39 -0.02 0.34 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.02 0.89 6.78 -2.39 -0.02 0.88 16 40 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 41 H 0.09 1.95 8.13 -2.39 -0.02 1.93 16 42 H 0.07 1.35 7.24 -2.39 -0.02 1.33 16 43 H 0.19 2.87 7.60 -2.91 -0.02 2.85 16 Total: -1.00 -65.51 358.63 1.72 -63.79 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.06 Total: 2.66 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.17 Total: -2.61 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -7.48 Total: -92.98 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.18 Total: -13.71 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.77 Total: -2.27 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.51 1.72 -63.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.575 kcal (2) G-P(sol) polarization free energy of solvation -65.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds