Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29830 * 119.99645 * 2 1 4 4 N 1.40100 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.34774 * 120.00233 * 180.02562 * 4 3 2 6 6 O 1.21316 * 119.99797 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00171 * 179.97438 * 5 4 3 8 8 C 1.50709 * 109.47054 * 179.97438 * 7 5 4 9 9 C 1.38649 * 120.78886 * 269.71822 * 8 7 5 10 10 C 1.38201 * 119.16141 * 179.79661 * 9 8 7 11 11 N 1.31875 * 120.76323 * 0.48997 * 10 9 8 12 12 C 1.31863 * 121.72482 * 359.73976 * 11 10 9 13 13 C 1.38203 * 120.76587 * 0.02562 * 12 11 10 14 14 C 1.47359 * 120.00473 * 179.97438 * 2 1 3 15 15 C 1.39812 * 120.08273 * 359.72726 * 14 2 1 16 16 C 1.37712 * 119.90643 * 179.73892 * 15 14 2 17 17 C 1.39081 * 120.09249 * 0.53438 * 16 15 14 18 18 O 1.35651 * 119.91687 * 179.69542 * 17 16 15 19 19 C 1.34807 * 116.99864 * 174.47338 * 18 17 16 20 20 H 1.07994 * 120.00016 * 5.05707 * 19 18 17 21 21 C 1.38645 * 119.99526 * 185.05770 * 19 18 17 22 22 N 1.31556 * 120.00512 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47195 * 60.00331 * 23 21 19 25 25 H 1.48498 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47470 * 300.00530 * 23 21 19 27 27 C 1.39080 * 120.16901 * 359.72063 * 17 16 15 28 28 C 1.37715 * 120.09184 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.46815 * 90.00262 * 1 2 3 30 30 H 1.09001 * 109.46691 * 209.99826 * 1 2 3 31 31 H 1.08992 * 109.47324 * 330.00291 * 1 2 3 32 32 H 0.97004 * 120.00089 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.47341 * 59.99723 * 7 5 4 34 34 H 1.09001 * 109.46973 * 299.99204 * 7 5 4 35 35 H 1.07998 * 120.41767 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.61807 * 180.20167 * 10 9 8 37 37 H 1.08004 * 119.61617 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.41858 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.04685 * 0.02562 * 15 14 2 40 40 H 1.08001 * 119.95407 * 180.25600 * 16 15 14 41 41 H 0.96995 * 120.00127 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.95674 * 179.97438 * 27 17 16 43 43 H 1.08003 * 120.04652 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3377 0.0005 5 6 2.1293 3.5049 0.0000 6 8 3.3425 3.5050 -0.0004 7 6 1.3758 4.8100 0.0000 8 6 2.3550 5.9555 0.0000 9 6 2.8117 6.4988 1.1911 10 6 3.7128 7.5459 1.1519 11 7 4.1300 8.0340 0.0000 12 6 3.7135 7.5454 -1.1518 13 6 2.8162 6.4950 -1.1910 14 6 2.2440 -1.2761 0.0006 15 6 1.5468 -2.4880 0.0069 16 6 2.2391 -3.6784 0.0019 17 6 3.6299 -3.6763 0.0019 18 8 4.3082 -4.8510 0.0033 19 6 5.6496 -4.7833 -0.1124 20 1 6.1432 -3.8228 -0.1186 21 6 6.3953 -5.9468 -0.2236 22 7 5.7940 -7.1168 -0.2166 23 14 8.2540 -5.8529 -0.3847 24 1 8.8209 -5.1762 0.8094 25 1 8.8119 -7.2253 -0.4880 26 1 8.6069 -5.0826 -1.6043 27 6 4.3270 -2.4728 0.0010 28 6 3.6420 -1.2781 0.0007 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 0.4855 2.3376 0.0005 33 1 0.7494 4.8679 0.8902 34 1 0.7489 4.8675 -0.8898 35 1 2.4705 6.1061 2.1375 36 1 4.0759 7.9725 2.0752 37 1 4.0779 7.9709 -2.0752 38 1 2.4784 6.0994 -2.1376 39 1 0.4667 -2.4905 0.0109 40 1 1.7012 -4.6150 0.0026 41 1 6.3157 -7.9308 -0.2948 42 1 5.4070 -2.4752 0.0015 43 1 4.1841 -0.3440 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747641610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = 41.149299 kcal Electronic energy + Delta-G solvation = -26622.922906 eV Core-core repulsion = 22635.106408 eV Total energy + Delta-G solvation = -3987.816498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.65973 -39.54569 -39.12072 -37.56089 -36.02316 -34.16727 -32.99485 -32.28304 -31.48014 -30.54169 -29.57542 -28.23445 -27.95401 -25.53418 -23.76059 -23.27090 -22.17535 -21.86285 -20.64841 -19.68927 -18.07877 -17.69129 -16.99155 -16.93954 -16.79814 -16.28010 -15.85362 -15.31618 -14.99556 -14.62464 -14.46111 -14.23191 -14.15926 -13.92659 -13.90775 -13.76696 -13.66467 -13.08687 -12.90962 -12.77887 -12.55792 -12.28483 -11.88854 -11.78270 -11.73957 -11.31156 -11.18254 -10.93015 -10.77646 -10.53069 -10.29715 -10.02038 -9.79201 -9.75147 -9.41230 -9.41042 -9.17222 -8.71560 -8.31584 -7.14652 -6.59382 -4.15264 0.87880 0.89325 1.31693 2.18087 2.40797 2.51765 2.97226 3.09110 3.12335 3.13946 3.55535 3.87696 4.05042 4.21038 4.35010 4.45100 4.52034 4.61434 4.72591 4.81491 4.88848 4.95068 4.96176 4.96764 5.01584 5.13652 5.31107 5.33586 5.48401 5.60651 5.64671 5.70583 5.76454 5.95966 5.99968 6.15316 6.32769 6.40869 6.53811 6.81884 6.92251 7.03814 7.10077 7.25901 7.31869 7.60495 7.67001 7.70405 7.86315 8.43157 8.85813 9.52019 10.57247 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.001939 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.112565 B =14438.696231 C =16075.731626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 N -0.268 5.268 4 N -0.587 5.587 5 C 0.528 3.472 6 O -0.499 6.499 7 C -0.099 4.099 8 C -0.022 4.022 9 C -0.158 4.158 10 C 0.099 3.901 11 N -0.487 5.487 12 C 0.099 3.901 13 C -0.157 4.157 14 C -0.167 4.167 15 C -0.042 4.042 16 C -0.198 4.198 17 C 0.168 3.832 18 O -0.165 6.165 19 C -0.392 4.392 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.855 5.855 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.243 4.243 28 C -0.020 4.020 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.379 0.621 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 22.386 0.229 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.012 4.012 3 N -0.075 5.075 4 N -0.329 5.329 5 C 0.313 3.687 6 O -0.371 6.371 7 C -0.141 4.141 8 C -0.031 4.031 9 C -0.177 4.177 10 C -0.057 4.057 11 N -0.196 5.196 12 C -0.057 4.057 13 C -0.177 4.177 14 C -0.171 4.171 15 C -0.063 4.063 16 C -0.217 4.217 17 C 0.111 3.889 18 O -0.066 6.066 19 C -0.468 4.468 20 H 0.114 0.886 21 C -0.164 4.164 22 N -0.488 5.488 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 C -0.262 4.262 28 C -0.040 4.040 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.217 0.783 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.261 23.163 0.233 25.756 hybrid contribution -1.059 -0.976 -0.067 1.442 sum -12.320 22.187 0.167 25.379 Atomic orbital electron populations 1.21343 0.93095 1.03698 1.03499 1.23353 0.92972 0.91849 0.93066 1.75330 1.22487 0.90351 1.19324 1.46896 1.08179 1.03771 1.74080 1.20191 0.88368 0.83242 0.76891 1.90774 1.13612 1.86803 1.45889 1.20671 0.97587 0.89787 1.06020 1.19607 0.95662 0.94157 0.93689 1.22006 0.99188 0.98030 0.98522 1.22732 0.93398 0.93261 0.96330 1.67661 1.23913 1.29389 0.98620 1.22732 0.93423 0.93236 0.96332 1.22008 0.99175 0.98010 0.98533 1.17625 0.92724 0.88798 1.17954 1.20699 0.98312 0.90707 0.96567 1.20085 0.91380 0.98026 1.12228 1.19585 0.91726 0.86377 0.91189 1.83926 1.21289 1.25313 1.76022 1.21406 0.78325 0.95015 1.52020 0.88614 1.25361 1.00896 0.94099 0.96075 1.70023 1.36812 0.97622 1.44335 0.85732 0.79979 0.78057 0.79485 1.19265 1.20140 1.19263 1.21132 1.00890 0.91738 1.12486 1.20999 0.92810 0.97445 0.92767 0.89787 0.89205 0.91919 0.78256 0.87242 0.87223 0.84845 0.82665 0.82663 0.84841 0.86360 0.85997 0.91657 0.85147 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.04 36.01 0.33 -1.10 16 2 C 0.17 2.47 7.10 -79.73 -0.57 1.90 16 3 N -0.27 -4.22 10.15 35.10 0.36 -3.86 16 4 N -0.59 -6.88 6.11 31.22 0.19 -6.69 16 5 C 0.53 6.47 7.94 -10.99 -0.09 6.38 16 6 O -0.50 -8.78 16.37 5.53 0.09 -8.69 16 7 C -0.10 -0.69 5.88 -29.03 -0.17 -0.86 16 8 C -0.02 -0.20 4.41 -104.32 -0.46 -0.66 16 9 C -0.16 -1.41 9.82 -39.44 -0.39 -1.80 16 10 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 11 N -0.49 -5.40 10.36 -13.25 -0.14 -5.53 16 12 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 13 C -0.16 -1.41 9.82 -39.44 -0.39 -1.80 16 14 C -0.17 -2.84 5.87 -105.01 -0.62 -3.46 16 15 C -0.04 -0.68 9.35 -39.19 -0.37 -1.05 16 16 C -0.20 -3.85 9.97 -39.46 -0.39 -4.24 16 17 C 0.17 3.88 6.65 -38.96 -0.26 3.62 16 18 O -0.16 -4.51 9.75 0.42 0.00 -4.50 16 19 C -0.39 -10.60 9.48 30.88 0.29 -10.31 16 20 H 0.10 2.41 5.18 -52.49 -0.27 2.13 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.85 -24.17 13.67 55.48 0.76 -23.41 16 23 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.24 -5.24 9.15 -39.46 -0.36 -5.61 16 28 C -0.02 -0.39 9.57 -39.19 -0.37 -0.76 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.74 6.45 -51.93 -0.34 0.40 16 31 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 32 H 0.38 2.89 6.44 -182.59 -1.18 1.72 16 33 H 0.11 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.11 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.12 1.43 6.34 -52.48 -0.33 1.10 16 40 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 43 H 0.12 2.32 7.55 -52.48 -0.40 1.93 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -35.72 376.07 -8.04 -43.76 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.65 Total: 5.48 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -4.30 Total: -17.23 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 1.17 Total: -39.50 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.72 -8.04 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747641610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.912 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds