Wall clock time and date at job start Tue Mar 31 2020 22:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29830 * 119.99645 * 2 1 4 4 N 1.40100 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.34774 * 120.00233 * 180.02562 * 4 3 2 6 6 O 1.21316 * 119.99797 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00171 * 179.97438 * 5 4 3 8 8 C 1.50709 * 109.47054 * 179.97438 * 7 5 4 9 9 C 1.38649 * 120.78886 * 269.71822 * 8 7 5 10 10 C 1.38201 * 119.16141 * 179.79661 * 9 8 7 11 11 N 1.31875 * 120.76323 * 0.48997 * 10 9 8 12 12 C 1.31863 * 121.72482 * 359.73976 * 11 10 9 13 13 C 1.38203 * 120.76587 * 0.02562 * 12 11 10 14 14 C 1.47359 * 120.00473 * 179.97438 * 2 1 3 15 15 C 1.39812 * 120.08273 * 359.72726 * 14 2 1 16 16 C 1.37712 * 119.90643 * 179.73892 * 15 14 2 17 17 C 1.39081 * 120.09249 * 0.53438 * 16 15 14 18 18 O 1.35651 * 119.91687 * 179.69542 * 17 16 15 19 19 C 1.34807 * 116.99864 * 174.47338 * 18 17 16 20 20 H 1.07994 * 120.00016 * 5.05707 * 19 18 17 21 21 C 1.38645 * 119.99526 * 185.05770 * 19 18 17 22 22 N 1.31556 * 120.00512 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47195 * 60.00331 * 23 21 19 25 25 H 1.48498 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47470 * 300.00530 * 23 21 19 27 27 C 1.39080 * 120.16901 * 359.72063 * 17 16 15 28 28 C 1.37715 * 120.09184 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.46815 * 90.00262 * 1 2 3 30 30 H 1.09001 * 109.46691 * 209.99826 * 1 2 3 31 31 H 1.08992 * 109.47324 * 330.00291 * 1 2 3 32 32 H 0.97004 * 120.00089 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.47341 * 59.99723 * 7 5 4 34 34 H 1.09001 * 109.46973 * 299.99204 * 7 5 4 35 35 H 1.07998 * 120.41767 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.61807 * 180.20167 * 10 9 8 37 37 H 1.08004 * 119.61617 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.41858 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.04685 * 0.02562 * 15 14 2 40 40 H 1.08001 * 119.95407 * 180.25600 * 16 15 14 41 41 H 0.96995 * 120.00127 * 179.97438 * 22 21 19 42 42 H 1.07998 * 119.95674 * 179.97438 * 27 17 16 43 43 H 1.08003 * 120.04652 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3377 0.0005 5 6 2.1293 3.5049 0.0000 6 8 3.3425 3.5050 -0.0004 7 6 1.3758 4.8100 0.0000 8 6 2.3550 5.9555 0.0000 9 6 2.8117 6.4988 1.1911 10 6 3.7128 7.5459 1.1519 11 7 4.1300 8.0340 0.0000 12 6 3.7135 7.5454 -1.1518 13 6 2.8162 6.4950 -1.1910 14 6 2.2440 -1.2761 0.0006 15 6 1.5468 -2.4880 0.0069 16 6 2.2391 -3.6784 0.0019 17 6 3.6299 -3.6763 0.0019 18 8 4.3082 -4.8510 0.0033 19 6 5.6496 -4.7833 -0.1124 20 1 6.1432 -3.8228 -0.1186 21 6 6.3953 -5.9468 -0.2236 22 7 5.7940 -7.1168 -0.2166 23 14 8.2540 -5.8529 -0.3847 24 1 8.8209 -5.1762 0.8094 25 1 8.8119 -7.2253 -0.4880 26 1 8.6069 -5.0826 -1.6043 27 6 4.3270 -2.4728 0.0010 28 6 3.6420 -1.2781 0.0007 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 0.4855 2.3376 0.0005 33 1 0.7494 4.8679 0.8902 34 1 0.7489 4.8675 -0.8898 35 1 2.4705 6.1061 2.1375 36 1 4.0759 7.9725 2.0752 37 1 4.0779 7.9709 -2.0752 38 1 2.4784 6.0994 -2.1376 39 1 0.4667 -2.4905 0.0109 40 1 1.7012 -4.6150 0.0026 41 1 6.3157 -7.9308 -0.2948 42 1 5.4070 -2.4752 0.0015 43 1 4.1841 -0.3440 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747641610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:35 Heat of formation + Delta-G solvation = 16.711980 kcal Electronic energy + Delta-G solvation = -26623.982588 eV Core-core repulsion = 22635.106408 eV Total energy + Delta-G solvation = -3988.876180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40470 -40.88521 -40.35218 -38.94380 -37.41252 -34.90064 -34.47790 -33.80349 -32.12354 -32.04971 -30.67376 -29.41823 -28.80691 -27.40822 -24.41736 -24.32794 -23.48467 -23.26626 -21.63235 -20.91814 -19.80316 -18.96390 -18.45870 -17.75010 -17.48145 -17.26213 -16.53061 -16.47896 -16.23862 -16.09509 -15.84629 -15.61762 -15.48465 -15.22455 -14.87897 -14.60122 -14.54185 -14.53156 -14.15788 -13.69756 -13.59122 -13.34751 -13.22910 -13.08593 -12.71893 -12.64503 -12.45752 -12.33554 -12.32094 -12.16277 -11.36488 -11.26123 -10.91670 -10.88918 -10.54530 -10.46725 -10.08193 -10.06355 -9.86827 -8.72084 -8.52133 -6.18685 -0.00500 0.21033 0.22120 0.59164 1.23367 1.34187 1.45078 1.49214 1.62162 1.89152 2.14852 2.83742 2.86460 3.16603 3.42278 3.42808 3.58070 3.60457 3.71936 3.81547 3.98460 4.10965 4.15779 4.20672 4.23437 4.33843 4.43522 4.48430 4.49580 4.69217 4.73410 4.74355 4.84720 4.88319 4.99460 5.02122 5.07757 5.22563 5.25844 5.32071 5.55999 5.63877 5.66341 5.78072 5.97743 6.09154 6.18448 6.60386 6.92448 7.02888 7.49659 7.68627 8.69413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.001939 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.112565 B =14438.696231 C =16075.731626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 N -0.306 5.306 4 N -0.573 5.573 5 C 0.525 3.475 6 O -0.562 6.562 7 C -0.085 4.085 8 C -0.037 4.037 9 C -0.165 4.165 10 C 0.082 3.918 11 N -0.517 5.517 12 C 0.082 3.918 13 C -0.165 4.165 14 C -0.144 4.144 15 C -0.022 4.022 16 C -0.201 4.201 17 C 0.133 3.867 18 O -0.218 6.218 19 C -0.417 4.417 20 H 0.099 0.901 21 C -0.016 4.016 22 N -0.911 5.911 23 Si 1.014 2.986 24 H -0.260 1.260 25 H -0.267 1.267 26 H -0.260 1.260 27 C -0.253 4.253 28 C -0.034 4.034 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.404 0.596 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.132 0.868 41 H 0.275 0.725 42 H 0.115 0.885 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 25.091 0.182 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.114 5.114 4 N -0.317 5.317 5 C 0.313 3.687 6 O -0.437 6.437 7 C -0.125 4.125 8 C -0.046 4.046 9 C -0.184 4.184 10 C -0.074 4.074 11 N -0.227 5.227 12 C -0.074 4.074 13 C -0.184 4.184 14 C -0.148 4.148 15 C -0.042 4.042 16 C -0.220 4.220 17 C 0.080 3.920 18 O -0.123 6.123 19 C -0.493 4.493 20 H 0.116 0.884 21 C -0.215 4.215 22 N -0.548 5.548 23 Si 0.834 3.166 24 H -0.184 1.184 25 H -0.192 1.192 26 H -0.184 1.184 27 C -0.272 4.272 28 C -0.055 4.055 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.247 0.753 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.171 0.829 39 H 0.193 0.807 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.970 25.927 0.190 29.939 hybrid contribution -0.253 -1.337 -0.038 1.361 sum -15.223 24.590 0.152 28.921 Atomic orbital electron populations 1.21483 0.88517 1.05886 1.05506 1.23386 0.95629 0.89933 0.92845 1.75190 1.25539 0.92232 1.18391 1.46766 1.09408 1.02269 1.73306 1.21241 0.87961 0.84588 0.74865 1.90763 1.16573 1.87698 1.48685 1.20753 0.96850 0.85345 1.09576 1.19963 0.96179 0.94786 0.93663 1.22305 0.98823 0.97729 0.99585 1.23128 0.93814 0.93823 0.96673 1.67658 1.24974 1.30534 0.99532 1.23126 0.93838 0.93796 0.96675 1.22306 0.98822 0.97721 0.99596 1.18100 0.91882 0.91236 1.13557 1.21201 1.00845 0.88582 0.93536 1.20464 0.90000 1.00091 1.11485 1.20153 0.93339 0.85937 0.92522 1.83904 1.21385 1.27160 1.79824 1.21761 0.79041 0.95547 1.52916 0.88355 1.26517 1.05885 0.93485 0.95602 1.70144 1.38687 0.98354 1.47611 0.84707 0.73691 0.78463 0.79781 1.18398 1.19172 1.18448 1.21134 1.00492 0.92463 1.13141 1.21074 0.94452 0.96236 0.93702 0.87594 0.87666 0.89256 0.75344 0.83558 0.83550 0.82922 0.81006 0.81012 0.82943 0.80698 0.85051 0.91567 0.86678 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.04 71.24 0.64 -1.15 16 2 C 0.17 4.10 7.10 45.26 0.32 4.42 16 3 N -0.31 -8.71 10.15 -42.87 -0.44 -9.15 16 4 N -0.57 -10.99 6.11 -173.50 -1.06 -12.05 16 5 C 0.52 11.15 7.94 87.66 0.70 11.85 16 6 O -0.56 -19.10 16.37 -3.14 -0.05 -19.15 16 7 C -0.08 -0.79 5.88 29.10 0.17 -0.62 16 8 C -0.04 -0.58 4.41 -19.67 -0.09 -0.66 16 9 C -0.16 -2.63 9.82 22.36 0.22 -2.42 16 10 C 0.08 1.50 11.18 84.68 0.95 2.44 16 11 N -0.52 -11.31 10.36 -195.84 -2.03 -13.33 16 12 C 0.08 1.50 11.18 84.68 0.95 2.45 16 13 C -0.16 -2.64 9.82 22.36 0.22 -2.42 16 14 C -0.14 -4.54 5.87 -20.12 -0.12 -4.65 16 15 C -0.02 -0.63 9.35 22.53 0.21 -0.42 16 16 C -0.20 -7.71 9.97 22.35 0.22 -7.48 16 17 C 0.13 6.43 6.65 22.67 0.15 6.58 16 18 O -0.22 -12.76 9.75 -21.42 -0.21 -12.97 16 19 C -0.42 -24.13 9.48 67.92 0.64 -23.49 16 20 H 0.10 5.34 5.18 -2.91 -0.02 5.33 16 21 C -0.02 -0.90 5.49 84.83 0.47 -0.43 16 22 N -0.91 -54.68 13.67 21.61 0.30 -54.38 16 23 Si 1.01 42.98 29.55 68.60 2.03 45.01 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 27 C -0.25 -11.45 9.15 22.35 0.20 -11.25 16 28 C -0.03 -1.34 9.57 22.53 0.22 -1.12 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.96 6.45 -2.39 -0.02 0.94 16 31 H 0.09 0.60 6.35 -2.39 -0.02 0.58 16 32 H 0.40 3.75 6.44 -213.32 -1.37 2.38 16 33 H 0.15 0.35 8.10 -2.39 -0.02 0.33 16 34 H 0.15 0.35 8.10 -2.39 -0.02 0.33 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.18 3.09 6.34 -2.91 -0.02 3.07 16 40 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.12 5.43 5.62 -2.91 -0.02 5.41 16 43 H 0.12 4.61 7.55 -2.91 -0.02 4.59 16 Total: -1.00 -87.64 376.07 4.31 -83.33 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.30 Total: 21.07 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 6.07 Total: -28.38 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -3.23 Total: -88.91 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.26 Total: -32.12 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -87.64 4.31 -83.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747641610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.044 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds