Wall clock time and date at job start Tue Mar 31 2020 23:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00166 * 2 1 4 4 O 1.21280 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00211 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47006 * 179.97438 * 6 5 3 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46769 * 300.00044 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.00153 * 1 2 3 31 31 H 0.97003 * 120.00190 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47772 * 59.99604 * 5 3 2 33 33 H 1.09003 * 109.47107 * 299.99250 * 5 3 2 34 34 H 1.09001 * 109.47520 * 59.99513 * 6 5 3 35 35 H 1.09003 * 109.47105 * 299.99424 * 6 5 3 36 36 H 1.08995 * 109.47307 * 60.00253 * 7 6 5 37 37 H 1.08997 * 109.47129 * 299.99125 * 7 6 5 38 38 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 39 39 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 40 40 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 42 42 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 43 43 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1558 2.6097 -0.0011 7 6 5.6859 2.6097 -0.0011 8 7 6.1742 3.9910 -0.0022 9 6 7.4993 4.2373 -0.0028 10 8 8.2895 3.3130 -0.0021 11 7 7.9485 5.5079 0.0018 12 6 9.3203 5.7657 0.1268 13 6 10.1486 4.8381 0.7410 14 6 11.5022 5.0910 0.8585 15 6 12.0341 6.2750 0.3743 16 9 13.3572 6.5193 0.4965 17 6 11.2135 7.2078 -0.2344 18 6 9.8547 6.9577 -0.3613 19 8 9.0473 7.8714 -0.9589 20 6 9.6430 8.9513 -1.5032 21 1 10.7058 9.1005 -1.3816 22 6 8.8915 9.8704 -2.2190 23 7 9.4727 10.9246 -2.7498 24 14 7.0533 9.6127 -2.4287 25 1 6.3306 10.2674 -1.3088 26 1 6.6138 10.2076 -3.7164 27 1 6.7540 8.1581 -2.4278 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0090 0.6535 -0.8908 33 1 4.0096 0.6532 0.8892 34 1 3.7928 3.1238 0.8888 35 1 3.7922 3.1233 -0.8911 36 1 6.0492 2.0956 -0.8908 37 1 6.0492 2.0963 0.8892 38 1 5.5439 4.7283 -0.0024 39 1 7.3223 6.2440 -0.0815 40 1 9.7363 3.9162 1.1238 41 1 12.1463 4.3657 1.3334 42 1 11.6306 8.1299 -0.6114 43 1 8.9469 11.5674 -3.2510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761662494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:16 Heat of formation + Delta-G solvation = -111.758343 kcal Electronic energy + Delta-G solvation = -28127.136584 eV Core-core repulsion = 23701.920288 eV Total energy + Delta-G solvation = -4425.216296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.24516 -40.44606 -40.06569 -38.94950 -36.72536 -35.75376 -35.00348 -34.19660 -32.85972 -32.48282 -29.58112 -28.97414 -27.89622 -25.87032 -25.38231 -22.81963 -22.05481 -21.59145 -20.93716 -20.48588 -18.42427 -18.20792 -17.87627 -17.63189 -16.81938 -16.51447 -16.28054 -15.71414 -15.41714 -15.18248 -15.15756 -15.00156 -14.56452 -14.30464 -14.10600 -13.91014 -13.74222 -13.52353 -13.41033 -13.21980 -12.83725 -12.56677 -12.43727 -12.40568 -12.27151 -11.85327 -11.78106 -11.51303 -11.24229 -10.97108 -10.79627 -10.45178 -10.32086 -9.98735 -9.76718 -9.61440 -9.54514 -9.10643 -8.98688 -7.93844 -7.15665 -6.52318 -4.19538 1.78828 2.04198 2.22878 2.60701 2.89980 3.12539 3.15627 3.24990 3.31756 4.10577 4.22630 4.26073 4.29964 4.54967 4.59476 4.61357 4.71055 4.96925 4.98902 5.02199 5.02409 5.15644 5.17237 5.33257 5.41132 5.51769 5.71396 5.79488 5.84770 5.92462 5.93362 6.08418 6.37153 6.49951 6.63571 6.83940 6.90471 6.97662 7.00518 7.14294 7.48322 7.67206 7.78045 7.89460 8.10507 8.69080 8.80773 9.35690 10.54890 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.002478 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.129846 B =11295.706741 C =13737.880956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.740 5.740 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.137 4.137 6 C -0.119 4.119 7 C 0.140 3.860 8 N -0.747 5.747 9 C 0.704 3.296 10 O -0.581 6.581 11 N -0.667 5.667 12 C 0.085 3.915 13 C -0.064 4.064 14 C -0.217 4.217 15 C 0.123 3.877 16 F -0.150 7.150 17 C -0.243 4.243 18 C 0.160 3.840 19 O -0.212 6.212 20 C -0.390 4.390 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.873 5.873 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.260 1.260 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.403 0.597 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.409 0.591 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 -20.895 6.387 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.392 5.392 3 C 0.297 3.703 4 O -0.413 6.413 5 C -0.177 4.177 6 C -0.157 4.157 7 C 0.016 3.984 8 N -0.403 5.403 9 C 0.405 3.595 10 O -0.459 6.459 11 N -0.313 5.313 12 C -0.010 4.010 13 C -0.084 4.084 14 C -0.237 4.237 15 C 0.103 3.897 16 F -0.128 7.128 17 C -0.263 4.263 18 C 0.106 3.894 19 O -0.117 6.117 20 C -0.465 4.465 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.510 5.510 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.244 0.756 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.082 -20.748 6.220 25.835 hybrid contribution -0.826 0.479 -0.341 1.014 sum -14.908 -20.269 5.879 25.839 Atomic orbital electron populations 1.21542 0.79633 1.02223 1.02430 1.45848 1.07886 1.08884 1.76569 1.20788 0.90456 0.83535 0.75473 1.90737 1.70598 1.31275 1.48690 1.21549 0.91494 0.99556 1.05110 1.21543 0.93956 0.95601 1.04596 1.21152 0.92621 0.82145 1.02508 1.45059 1.05407 1.09042 1.80808 1.15836 0.82476 0.83200 0.78022 1.90859 1.54245 1.43319 1.57510 1.42255 1.06903 1.06711 1.75433 1.16707 0.82714 0.94777 1.06816 1.20806 0.91894 0.99087 0.96643 1.20558 0.95797 0.97699 1.09636 1.17462 0.77010 0.95069 1.00142 1.91424 1.32473 1.94714 1.94227 1.20951 0.93115 1.02705 1.09563 1.18395 0.88933 0.88653 0.93465 1.83489 1.34368 1.29870 1.63928 1.20747 0.96227 0.97231 1.32298 0.87382 1.24469 1.00252 0.94384 0.94794 1.69641 1.37168 1.11030 1.33132 0.86194 0.83185 0.79550 0.77990 1.19723 1.20662 1.18462 0.90656 0.92209 0.92189 0.76363 0.88270 0.88287 0.90325 0.90299 0.91443 0.91414 0.76744 0.75551 0.83195 0.85768 0.83346 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.74 -3.75 5.71 -67.08 -0.38 -4.13 16 3 C 0.51 4.07 7.83 -10.99 -0.09 3.99 16 4 O -0.54 -6.73 15.98 5.56 0.09 -6.64 16 5 C -0.14 -0.74 5.70 -27.88 -0.16 -0.90 16 6 C -0.12 -0.90 4.62 -26.73 -0.12 -1.03 16 7 C 0.14 1.30 5.68 -4.03 -0.02 1.28 16 8 N -0.75 -8.77 5.56 -65.22 -0.36 -9.14 16 9 C 0.70 11.28 8.37 -86.92 -0.73 10.55 16 10 O -0.58 -10.81 13.51 5.28 0.07 -10.74 16 11 N -0.67 -11.46 5.30 -14.07 -0.07 -11.53 16 12 C 0.08 1.68 6.45 -83.44 -0.54 1.14 16 13 C -0.06 -1.18 8.71 -39.43 -0.34 -1.53 16 14 C -0.22 -3.92 10.02 -39.48 -0.40 -4.32 16 15 C 0.12 2.44 7.29 -39.43 -0.29 2.16 16 16 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 17 C -0.24 -5.29 9.14 -39.36 -0.36 -5.65 16 18 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 19 O -0.21 -5.14 8.00 0.01 0.00 -5.14 16 20 C -0.39 -10.45 9.94 30.88 0.31 -10.14 16 21 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 22 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 23 N -0.87 -24.40 13.96 55.48 0.77 -23.63 16 24 Si 0.91 20.31 28.62 -169.99 -4.86 15.44 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 0.76 8.83 -40.82 -0.36 0.40 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.91 8.49 -40.82 -0.35 3.56 16 39 H 0.41 6.49 8.36 -40.82 -0.34 6.15 16 40 H 0.15 2.71 5.78 -52.49 -0.30 2.40 16 41 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 42 H 0.15 3.39 5.63 -52.49 -0.30 3.09 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -33.85 373.94 -6.82 -40.67 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.29 Total: 10.51 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.45 Total: 1.54 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.05 Total: -48.42 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.16 Total: -22.52 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.86 Total: 15.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.85 -6.82 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.088 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds