Wall clock time and date at job start Tue Mar 31 2020 23:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00166 * 2 1 4 4 O 1.21280 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00211 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47006 * 179.97438 * 6 5 3 8 8 N 1.46512 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99788 * 180.02562 * 8 7 6 10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 7 12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8 13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9 14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11 15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12 16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13 17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13 18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14 19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15 20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17 21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18 22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18 23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20 26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20 27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20 28 28 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46769 * 300.00044 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.00153 * 1 2 3 31 31 H 0.97003 * 120.00190 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47772 * 59.99604 * 5 3 2 33 33 H 1.09003 * 109.47107 * 299.99250 * 5 3 2 34 34 H 1.09001 * 109.47520 * 59.99513 * 6 5 3 35 35 H 1.09003 * 109.47105 * 299.99424 * 6 5 3 36 36 H 1.08995 * 109.47307 * 60.00253 * 7 6 5 37 37 H 1.08997 * 109.47129 * 299.99125 * 7 6 5 38 38 H 0.96998 * 120.00122 * 0.02562 * 8 7 6 39 39 H 0.97002 * 119.99705 * 354.05574 * 11 9 8 40 40 H 1.07999 * 119.99259 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.90963 * 180.25088 * 14 13 12 42 42 H 1.08002 * 120.01361 * 180.02562 * 17 15 14 43 43 H 0.96998 * 120.00116 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1558 2.6097 -0.0011 7 6 5.6859 2.6097 -0.0011 8 7 6.1742 3.9910 -0.0022 9 6 7.4993 4.2373 -0.0028 10 8 8.2895 3.3130 -0.0021 11 7 7.9485 5.5079 0.0018 12 6 9.3203 5.7657 0.1268 13 6 10.1486 4.8381 0.7410 14 6 11.5022 5.0910 0.8585 15 6 12.0341 6.2750 0.3743 16 9 13.3572 6.5193 0.4965 17 6 11.2135 7.2078 -0.2344 18 6 9.8547 6.9577 -0.3613 19 8 9.0473 7.8714 -0.9589 20 6 9.6430 8.9513 -1.5032 21 1 10.7058 9.1005 -1.3816 22 6 8.8915 9.8704 -2.2190 23 7 9.4727 10.9246 -2.7498 24 14 7.0533 9.6127 -2.4287 25 1 6.3306 10.2674 -1.3088 26 1 6.6138 10.2076 -3.7164 27 1 6.7540 8.1581 -2.4278 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0090 0.6535 -0.8908 33 1 4.0096 0.6532 0.8892 34 1 3.7928 3.1238 0.8888 35 1 3.7922 3.1233 -0.8911 36 1 6.0492 2.0956 -0.8908 37 1 6.0492 2.0963 0.8892 38 1 5.5439 4.7283 -0.0024 39 1 7.3223 6.2440 -0.0815 40 1 9.7363 3.9162 1.1238 41 1 12.1463 4.3657 1.3334 42 1 11.6306 8.1299 -0.6114 43 1 8.9469 11.5674 -3.2510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761662494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:15 Heat of formation + Delta-G solvation = -137.319025 kcal Electronic energy + Delta-G solvation = -28128.244978 eV Core-core repulsion = 23701.920288 eV Total energy + Delta-G solvation = -4426.324690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.82527 -41.83372 -40.73238 -40.46342 -38.27877 -36.73701 -35.61738 -35.57509 -34.46783 -33.68252 -31.21056 -30.22870 -28.78604 -27.33156 -26.46685 -24.21418 -23.30657 -22.75660 -22.00997 -21.28547 -20.15323 -19.77488 -19.23945 -18.54086 -18.04849 -17.33277 -17.13480 -16.90873 -16.82491 -16.59271 -16.36496 -16.19391 -15.87615 -15.70598 -15.43176 -15.30613 -15.17234 -14.90227 -14.48745 -14.26042 -14.09087 -13.81552 -13.59469 -13.28591 -13.22351 -13.03704 -12.92485 -12.63139 -12.45821 -12.39657 -12.17438 -11.85631 -11.65631 -11.40621 -11.07974 -10.95378 -10.91967 -10.13181 -10.11141 -9.59597 -8.73726 -8.51403 -6.25122 0.18775 0.41438 1.33424 1.38006 1.50718 1.55615 1.66131 2.00851 2.26003 2.34927 2.66602 2.76836 3.03508 3.17115 3.40053 3.73147 3.90959 4.02798 4.06290 4.15266 4.28885 4.31442 4.51103 4.53183 4.57985 4.65315 4.71102 4.78580 4.89638 4.95535 5.08262 5.16667 5.18379 5.22593 5.30985 5.46488 5.47207 5.50079 5.61140 5.82389 5.92455 6.10381 6.57927 6.80436 6.91089 7.29916 7.38892 7.48311 8.59524 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.002478 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.129846 B =11295.706741 C =13737.880956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.727 5.727 3 C 0.504 3.496 4 O -0.592 6.592 5 C -0.130 4.130 6 C -0.109 4.109 7 C 0.141 3.859 8 N -0.732 5.732 9 C 0.703 3.297 10 O -0.606 6.606 11 N -0.669 5.669 12 C 0.097 3.903 13 C -0.063 4.063 14 C -0.187 4.187 15 C 0.112 3.888 16 F -0.147 7.147 17 C -0.253 4.253 18 C 0.133 3.867 19 O -0.223 6.223 20 C -0.400 4.400 21 H 0.080 0.920 22 C 0.012 3.988 23 N -0.920 5.920 24 Si 0.971 3.029 25 H -0.261 1.261 26 H -0.276 1.276 27 H -0.251 1.251 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.421 0.579 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.415 0.585 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -24.443 7.422 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.379 5.379 3 C 0.292 3.708 4 O -0.472 6.472 5 C -0.170 4.170 6 C -0.148 4.148 7 C 0.017 3.983 8 N -0.388 5.388 9 C 0.404 3.596 10 O -0.486 6.486 11 N -0.316 5.316 12 C 0.001 3.999 13 C -0.083 4.083 14 C -0.207 4.207 15 C 0.092 3.908 16 F -0.126 7.126 17 C -0.274 4.274 18 C 0.081 3.919 19 O -0.130 6.130 20 C -0.476 4.476 21 H 0.097 0.903 22 C -0.187 4.187 23 N -0.560 5.560 24 Si 0.792 3.208 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.175 1.175 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.258 0.742 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.245 0.755 39 H 0.251 0.749 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.144 0.856 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.510 -24.384 7.281 29.802 hybrid contribution -0.292 1.324 -0.533 1.457 sum -15.801 -23.060 6.748 28.758 Atomic orbital electron populations 1.21631 0.79467 1.04042 1.01118 1.45802 1.08177 1.09033 1.74887 1.21269 0.91526 0.83392 0.74612 1.90717 1.71774 1.33247 1.51507 1.21556 0.89579 0.98386 1.07441 1.21417 0.92577 0.97147 1.03625 1.21317 0.93457 0.80603 1.02879 1.45082 1.04013 1.10688 1.79032 1.15939 0.83584 0.82276 0.77811 1.90830 1.55280 1.43734 1.58750 1.42290 1.05991 1.07673 1.75631 1.16866 0.84215 0.93662 1.05186 1.21058 0.91933 0.99126 0.96205 1.20964 0.96031 0.96872 1.06845 1.17501 0.77044 0.95474 1.00768 1.91430 1.32128 1.94779 1.94228 1.20955 0.93711 1.02619 1.10106 1.18712 0.89181 0.89583 0.94417 1.83440 1.34184 1.29828 1.65528 1.20634 0.95367 0.98532 1.33028 0.90263 1.25321 1.05076 0.93937 0.94401 1.69738 1.39076 1.12318 1.34826 0.85211 0.77269 0.79955 0.78322 1.18528 1.20078 1.17468 0.87255 0.93493 0.93616 0.74246 0.86030 0.85681 0.91096 0.91596 0.91400 0.90599 0.75502 0.74880 0.81704 0.82119 0.85580 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.70 127.77 1.37 2.02 16 2 N -0.73 -5.73 5.71 -484.53 -2.77 -8.49 16 3 C 0.50 7.19 7.83 87.66 0.69 7.87 16 4 O -0.59 -14.68 15.98 -3.03 -0.05 -14.72 16 5 C -0.13 -1.02 5.70 29.85 0.17 -0.85 16 6 C -0.11 -1.43 4.62 30.59 0.14 -1.29 16 7 C 0.14 2.22 5.68 86.38 0.49 2.71 16 8 N -0.73 -15.42 5.56 -478.51 -2.66 -18.08 16 9 C 0.70 20.87 8.37 179.06 1.50 22.37 16 10 O -0.61 -20.87 13.51 -4.03 -0.05 -20.93 16 11 N -0.67 -21.86 5.30 -316.70 -1.68 -23.54 16 12 C 0.10 3.70 6.45 38.22 0.25 3.95 16 13 C -0.06 -2.16 8.71 22.37 0.19 -1.97 16 14 C -0.19 -6.23 10.02 22.33 0.22 -6.01 16 15 C 0.11 4.35 7.29 22.37 0.16 4.51 16 16 F -0.15 -5.54 17.26 44.97 0.78 -4.77 16 17 C -0.25 -11.32 9.14 22.42 0.20 -11.12 16 18 C 0.13 5.97 6.66 22.68 0.15 6.13 16 19 O -0.22 -11.06 8.00 -22.88 -0.18 -11.24 16 20 C -0.40 -22.39 9.94 67.91 0.68 -21.72 16 21 H 0.08 4.76 5.44 -2.91 -0.02 4.74 16 22 C 0.01 0.65 5.49 84.83 0.47 1.12 16 23 N -0.92 -53.47 13.96 21.61 0.30 -53.17 16 24 Si 0.97 42.18 28.62 68.60 1.96 44.15 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 28 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 0.21 8.83 -92.71 -0.82 -0.61 16 32 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.41 7.11 8.49 -92.71 -0.79 6.32 16 39 H 0.41 12.56 8.36 -92.71 -0.78 11.78 16 40 H 0.17 5.36 5.78 -2.91 -0.02 5.34 16 41 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.13 6.18 5.63 -2.91 -0.02 6.16 16 43 H 0.29 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -76.12 373.94 1.05 -75.07 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -1.28 Total: 27.99 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.68 Total: 7.73 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -6.80 Total: -103.28 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.29 Total: -46.90 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.96 Total: 44.15 kcal Total: -76.12 1.05 -75.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761662494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.247 kcal (2) G-P(sol) polarization free energy of solvation -76.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds