Wall clock time and date at job start Tue Mar 31 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00001 * 2 1 4 4 C 1.52995 * 109.47019 * 125.00136 * 3 2 1 5 5 H 1.08993 * 109.47623 * 54.99506 * 4 3 2 6 6 N 1.46511 * 109.47049 * 294.99805 * 4 3 2 7 7 S 1.65594 * 120.00203 * 114.45360 * 6 4 3 8 8 O 1.42103 * 106.40137 * 174.98616 * 7 6 4 9 9 O 1.42105 * 106.40324 * 307.90439 * 7 6 4 10 10 N 1.65599 * 107.21721 * 61.44363 * 7 6 4 11 11 C 1.46502 * 119.99795 * 76.01866 * 10 7 6 12 12 C 1.53000 * 109.47564 * 97.92191 * 11 10 7 13 13 C 1.46497 * 120.00395 * 256.01472 * 10 7 6 14 14 C 1.50698 * 109.47033 * 94.99988 * 13 10 7 15 15 H 1.08003 * 120.00425 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00147 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00304 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47351 * 89.99563 * 18 16 14 20 20 H 1.48496 * 109.47065 * 209.99725 * 18 16 14 21 21 H 1.48503 * 109.46703 * 329.99384 * 18 16 14 22 22 C 1.50699 * 109.47278 * 174.99918 * 4 3 2 23 23 C 1.38651 * 120.79033 * 79.96935 * 22 4 3 24 24 C 1.38202 * 119.16586 * 180.02562 * 23 22 4 25 25 N 1.31868 * 120.76111 * 359.97438 * 24 23 22 26 26 C 1.31876 * 121.72931 * 359.97438 * 25 24 23 27 27 C 1.38204 * 120.75916 * 0.02997 * 26 25 24 28 28 H 1.07996 * 120.00360 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99669 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99425 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.46880 * 4.99618 * 3 2 1 32 32 H 1.09004 * 109.46684 * 244.99504 * 3 2 1 33 33 H 0.97004 * 119.99585 * 294.45630 * 6 4 3 34 34 H 1.08998 * 109.46893 * 217.92516 * 11 10 7 35 35 H 1.09004 * 109.47014 * 337.92185 * 11 10 7 36 36 H 1.09001 * 109.47166 * 305.02779 * 12 11 10 37 37 H 1.08998 * 109.46683 * 65.02206 * 12 11 10 38 38 H 1.08993 * 109.47383 * 185.02171 * 12 11 10 39 39 H 1.08992 * 109.47522 * 214.99927 * 13 10 7 40 40 H 1.09003 * 109.47119 * 335.00434 * 13 10 7 41 41 H 0.97007 * 120.00239 * 180.02562 * 17 16 14 42 42 H 1.08009 * 120.41948 * 0.04583 * 23 22 4 43 43 H 1.07996 * 119.62347 * 180.25953 * 24 23 22 44 44 H 1.07997 * 119.61823 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.41552 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 3.6826 0.4573 1.1404 6 7 2.2785 1.3223 2.4362 7 16 2.3886 0.0242 3.4584 8 8 1.6452 0.3645 4.6207 9 8 2.1187 -1.1290 2.6732 10 7 3.9708 -0.0931 3.9330 11 6 4.5069 0.8354 4.9313 12 6 4.4915 0.1687 6.3083 13 6 4.8345 -1.1255 3.3547 14 6 5.6009 -0.5466 2.1934 15 1 5.4592 0.4871 1.9143 16 6 6.4830 -1.3365 1.4872 17 7 6.6561 -2.5950 1.8272 18 14 7.4336 -0.6187 0.0482 19 1 8.7172 -0.0530 0.5356 20 1 7.7092 -1.6874 -0.9453 21 1 6.6299 0.4548 -0.5897 22 6 3.8748 2.5825 1.1121 23 6 3.3738 3.7995 1.5483 24 6 4.1729 4.9243 1.4687 25 7 5.3976 4.8487 0.9855 26 6 5.9071 3.7083 0.5625 27 6 5.1670 2.5422 0.6113 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.7131 2.0756 2.6680 34 1 5.5306 1.1011 4.6677 35 1 3.8929 1.7358 4.9568 36 1 3.4826 -0.1771 6.5334 37 1 5.1750 -0.6804 6.3084 38 1 4.8060 0.8884 7.0640 39 1 5.5344 -1.4796 4.1115 40 1 4.2229 -1.9582 3.0073 41 1 7.2770 -3.1507 1.3306 42 1 2.3718 3.8676 1.9457 43 1 3.7917 5.8752 1.8102 44 1 6.9140 3.6856 0.1727 45 1 5.5897 1.6113 0.2630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800055641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:09 Heat of formation + Delta-G solvation = -24.448666 kcal Electronic energy + Delta-G solvation = -29618.239696 eV Core-core repulsion = 25763.022608 eV Total energy + Delta-G solvation = -3855.217088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.14350 -37.16450 -36.51939 -36.05654 -35.19397 -33.44635 -32.80713 -31.78340 -31.01338 -29.97239 -28.25248 -26.69878 -24.22183 -23.52653 -23.05915 -21.73885 -21.20838 -19.69330 -18.88447 -17.36336 -17.07453 -16.84868 -16.24618 -15.97788 -15.79733 -15.38940 -15.15560 -14.58036 -14.08676 -13.93101 -13.81637 -13.55446 -13.54596 -13.39563 -13.16889 -12.99283 -12.22788 -12.12366 -12.00869 -11.76241 -11.69440 -11.52828 -11.30562 -11.28774 -11.20460 -11.12632 -10.87401 -10.70971 -10.55838 -10.35077 -10.06635 -9.82891 -9.61286 -9.45036 -9.26011 -8.96672 -8.88893 -8.57490 -8.11392 -6.19654 -4.26288 1.20716 1.29398 1.43287 2.60043 3.10738 3.17265 3.24472 3.44677 3.97599 4.13328 4.24167 4.58628 4.65194 4.89174 5.06213 5.13894 5.22483 5.25050 5.30114 5.32453 5.39352 5.45868 5.60825 5.66708 5.74940 5.79015 5.82549 5.91720 5.97614 6.05990 6.15139 6.15867 6.28237 6.31183 6.59853 6.65715 6.68026 6.86170 6.98797 7.06726 7.20073 7.31330 7.39707 7.62068 7.77777 8.08137 8.10196 8.77353 9.38441 10.88445 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007528 B = 0.007336 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3718.326469 B = 3815.668095 C = 4820.522447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.097 4.097 4 C 0.186 3.814 5 H 0.137 0.863 6 N -1.121 6.121 7 S 2.782 3.218 8 O -1.001 7.001 9 O -0.967 6.967 10 N -0.991 5.991 11 C 0.133 3.867 12 C -0.169 4.169 13 C 0.244 3.756 14 C -0.548 4.548 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.884 5.884 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.263 1.263 22 C -0.037 4.037 23 C -0.164 4.164 24 C 0.090 3.910 25 N -0.490 5.490 26 C 0.096 3.904 27 C -0.158 4.158 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.265 0.735 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 10.421 -1.291 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.149 4.149 3 C -0.136 4.136 4 C 0.079 3.921 5 H 0.154 0.846 6 N -0.877 5.877 7 S 2.790 3.210 8 O -0.985 6.985 9 O -0.951 6.951 10 N -0.833 5.833 11 C 0.007 3.993 12 C -0.228 4.228 13 C 0.122 3.878 14 C -0.587 4.587 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.521 5.521 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.047 4.047 23 C -0.184 4.184 24 C -0.067 4.067 25 N -0.199 5.199 26 C -0.060 4.060 27 C -0.178 4.178 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.237 0.763 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.212 10.230 -1.156 12.024 hybrid contribution 0.290 0.135 -0.678 0.750 sum -5.922 10.364 -1.834 12.077 Atomic orbital electron populations 1.23690 0.95923 1.01150 1.03674 1.23005 0.96112 0.98538 0.97282 1.21135 0.98142 0.96387 0.97955 1.19943 0.91559 0.97309 0.83282 0.84594 1.56170 1.59318 1.39056 1.33166 1.01945 0.73144 0.73155 0.72795 1.93557 1.71343 1.84914 1.48706 1.93597 1.83642 1.47464 1.70348 1.57710 1.30112 1.43621 1.51906 1.20924 1.00396 0.90523 0.87475 1.22196 1.02443 1.01373 0.96834 1.19204 0.89743 0.85393 0.93430 1.21693 1.24524 0.97825 1.14645 0.91104 1.24932 0.96597 0.94704 0.97347 1.69919 1.35798 1.06026 1.40406 0.86868 0.80715 0.78990 0.82531 1.20383 1.21056 1.18911 1.20542 0.94346 0.95161 0.94633 1.21867 1.01339 0.93227 1.02017 1.22622 0.89892 0.98130 0.96048 1.67633 1.13397 1.28637 1.10250 1.22698 0.99751 0.87753 0.95843 1.22575 0.94308 1.01179 0.99722 0.88667 0.89355 0.85971 0.91286 0.89919 0.76305 0.90422 0.92481 0.92370 0.92068 0.92538 0.94406 0.93010 0.92522 0.85367 0.83250 0.83031 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.80 14.32 29.01 0.42 -2.38 16 2 C -0.13 -1.96 8.21 -36.03 -0.30 -2.26 16 3 C -0.10 -1.30 5.32 -27.89 -0.15 -1.45 16 4 C 0.19 2.84 2.33 -69.08 -0.16 2.68 16 5 H 0.14 2.49 5.13 -51.93 -0.27 2.23 16 6 N -1.12 -16.72 4.94 -5.88 -0.03 -16.75 16 7 S 2.78 52.35 5.80 -107.50 -0.62 51.72 16 8 O -1.00 -20.08 17.54 -57.17 -1.00 -21.08 16 9 O -0.97 -20.98 15.24 -57.17 -0.87 -21.85 16 10 N -0.99 -19.29 2.83 -115.67 -0.33 -19.62 16 11 C 0.13 2.26 6.13 -4.04 -0.02 2.23 16 12 C -0.17 -2.66 10.21 37.16 0.38 -2.28 16 13 C 0.24 5.67 5.35 -5.20 -0.03 5.64 16 14 C -0.55 -12.92 7.91 -34.44 -0.27 -13.19 16 15 H 0.07 1.53 4.03 -52.48 -0.21 1.32 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.88 -23.84 13.29 55.43 0.74 -23.10 16 18 Si 0.88 18.66 28.75 -169.99 -4.89 13.77 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.26 -4.98 5.20 56.52 0.29 -4.69 16 22 C -0.04 -0.53 4.84 -104.32 -0.50 -1.04 16 23 C -0.16 -2.03 9.40 -39.44 -0.37 -2.40 16 24 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 25 N -0.49 -7.14 10.36 -13.25 -0.14 -7.28 16 26 C 0.10 1.41 11.18 -17.54 -0.20 1.21 16 27 C -0.16 -2.47 8.50 -39.44 -0.34 -2.80 16 28 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.09 1.02 7.84 -52.48 -0.41 0.61 16 30 H 0.12 2.08 8.00 -52.49 -0.42 1.66 16 31 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 4.90 7.68 -34.47 -0.26 4.64 16 34 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 35 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 36 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.93 7.98 -51.93 -0.41 0.51 16 40 H 0.05 1.33 6.89 -51.93 -0.36 0.98 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.13 1.26 6.99 -52.48 -0.37 0.89 16 43 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 45 H 0.15 2.56 4.22 -52.48 -0.22 2.33 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -29.62 375.93 -9.68 -39.30 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.36 Total: 12.73 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.84 Total: -13.50 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.24 Total: -66.75 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.87 Total: -42.93 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.89 Total: 13.77 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.62 Total: 51.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.62 -9.68 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800055641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.851 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds