Wall clock time and date at job start Tue Mar 31 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00001 * 2 1 4 4 C 1.52995 * 109.47019 * 125.00136 * 3 2 1 5 5 H 1.08993 * 109.47623 * 54.99506 * 4 3 2 6 6 N 1.46511 * 109.47049 * 294.99805 * 4 3 2 7 7 S 1.65594 * 120.00203 * 114.45360 * 6 4 3 8 8 O 1.42103 * 106.40137 * 174.98616 * 7 6 4 9 9 O 1.42105 * 106.40324 * 307.90439 * 7 6 4 10 10 N 1.65599 * 107.21721 * 61.44363 * 7 6 4 11 11 C 1.46502 * 119.99795 * 76.01866 * 10 7 6 12 12 C 1.53000 * 109.47564 * 97.92191 * 11 10 7 13 13 C 1.46497 * 120.00395 * 256.01472 * 10 7 6 14 14 C 1.50698 * 109.47033 * 94.99988 * 13 10 7 15 15 H 1.08003 * 120.00425 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00147 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00304 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47351 * 89.99563 * 18 16 14 20 20 H 1.48496 * 109.47065 * 209.99725 * 18 16 14 21 21 H 1.48503 * 109.46703 * 329.99384 * 18 16 14 22 22 C 1.50699 * 109.47278 * 174.99918 * 4 3 2 23 23 C 1.38651 * 120.79033 * 79.96935 * 22 4 3 24 24 C 1.38202 * 119.16586 * 180.02562 * 23 22 4 25 25 N 1.31868 * 120.76111 * 359.97438 * 24 23 22 26 26 C 1.31876 * 121.72931 * 359.97438 * 25 24 23 27 27 C 1.38204 * 120.75916 * 0.02997 * 26 25 24 28 28 H 1.07996 * 120.00360 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99669 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99425 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.46880 * 4.99618 * 3 2 1 32 32 H 1.09004 * 109.46684 * 244.99504 * 3 2 1 33 33 H 0.97004 * 119.99585 * 294.45630 * 6 4 3 34 34 H 1.08998 * 109.46893 * 217.92516 * 11 10 7 35 35 H 1.09004 * 109.47014 * 337.92185 * 11 10 7 36 36 H 1.09001 * 109.47166 * 305.02779 * 12 11 10 37 37 H 1.08998 * 109.46683 * 65.02206 * 12 11 10 38 38 H 1.08993 * 109.47383 * 185.02171 * 12 11 10 39 39 H 1.08992 * 109.47522 * 214.99927 * 13 10 7 40 40 H 1.09003 * 109.47119 * 335.00434 * 13 10 7 41 41 H 0.97007 * 120.00239 * 180.02562 * 17 16 14 42 42 H 1.08009 * 120.41948 * 0.04583 * 23 22 4 43 43 H 1.07996 * 119.62347 * 180.25953 * 24 23 22 44 44 H 1.07997 * 119.61823 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.41552 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 3.6826 0.4573 1.1404 6 7 2.2785 1.3223 2.4362 7 16 2.3886 0.0242 3.4584 8 8 1.6452 0.3645 4.6207 9 8 2.1187 -1.1290 2.6732 10 7 3.9708 -0.0931 3.9330 11 6 4.5069 0.8354 4.9313 12 6 4.4915 0.1687 6.3083 13 6 4.8345 -1.1255 3.3547 14 6 5.6009 -0.5466 2.1934 15 1 5.4592 0.4871 1.9143 16 6 6.4830 -1.3365 1.4872 17 7 6.6561 -2.5950 1.8272 18 14 7.4336 -0.6187 0.0482 19 1 8.7172 -0.0530 0.5356 20 1 7.7092 -1.6874 -0.9453 21 1 6.6299 0.4548 -0.5897 22 6 3.8748 2.5825 1.1121 23 6 3.3738 3.7995 1.5483 24 6 4.1729 4.9243 1.4687 25 7 5.3976 4.8487 0.9855 26 6 5.9071 3.7083 0.5625 27 6 5.1670 2.5422 0.6113 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.7131 2.0756 2.6680 34 1 5.5306 1.1011 4.6677 35 1 3.8929 1.7358 4.9568 36 1 3.4826 -0.1771 6.5334 37 1 5.1750 -0.6804 6.3084 38 1 4.8060 0.8884 7.0640 39 1 5.5344 -1.4796 4.1115 40 1 4.2229 -1.9582 3.0073 41 1 7.2770 -3.1507 1.3306 42 1 2.3718 3.8676 1.9457 43 1 3.7917 5.8752 1.8102 44 1 6.9140 3.6856 0.1727 45 1 5.5897 1.6113 0.2630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800055641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:09 Heat of formation + Delta-G solvation = -44.566193 kcal Electronic energy + Delta-G solvation = -29619.112057 eV Core-core repulsion = 25763.022608 eV Total energy + Delta-G solvation = -3856.089450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20126 -38.46451 -37.99054 -37.62816 -36.81165 -34.66754 -34.56229 -32.95307 -32.03798 -31.51091 -29.38144 -28.47173 -25.31115 -25.03217 -24.31307 -23.25495 -22.34798 -20.86098 -20.31127 -18.78234 -18.54695 -18.40861 -17.82163 -17.26624 -17.05013 -16.51982 -16.45276 -16.16173 -15.50238 -15.10669 -15.02378 -14.75261 -14.73230 -14.63302 -14.52800 -14.38923 -13.73859 -13.67843 -13.48725 -13.27542 -13.10273 -12.95675 -12.87489 -12.70588 -12.62146 -12.44659 -12.42911 -12.24935 -11.89045 -11.73787 -11.65945 -11.47131 -10.88352 -10.55646 -10.51026 -10.35045 -10.02198 -9.99656 -9.75724 -8.12102 -6.24167 -0.28319 0.27558 0.33004 1.41869 1.44921 1.48700 1.52950 1.99971 2.43957 2.64706 2.94086 3.20093 3.51222 3.54376 3.65796 3.91014 3.94000 4.14672 4.17235 4.22615 4.28606 4.32857 4.43010 4.47904 4.49457 4.58819 4.69470 4.78393 4.90382 4.95737 4.97785 5.01044 5.09682 5.15925 5.18738 5.30157 5.42032 5.52352 5.56639 5.80962 5.83139 5.85982 5.92688 5.98036 6.16546 6.21266 6.87809 7.08252 7.44849 8.96330 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007528 B = 0.007336 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3718.326469 B = 3815.668095 C = 4820.522447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.089 4.089 4 C 0.189 3.811 5 H 0.101 0.899 6 N -1.102 6.102 7 S 2.795 3.205 8 O -1.011 7.011 9 O -1.001 7.001 10 N -0.996 5.996 11 C 0.125 3.875 12 C -0.167 4.167 13 C 0.259 3.741 14 C -0.539 4.539 15 H 0.091 0.909 16 C 0.014 3.986 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.229 1.229 22 C -0.043 4.043 23 C -0.156 4.156 24 C 0.093 3.907 25 N -0.506 5.506 26 C 0.089 3.911 27 C -0.178 4.178 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.422 0.578 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.160 0.840 43 H 0.184 0.816 44 H 0.163 0.837 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 14.286 -1.513 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C -0.128 4.128 4 C 0.081 3.919 5 H 0.119 0.881 6 N -0.864 5.864 7 S 2.803 3.197 8 O -0.995 6.995 9 O -0.984 6.984 10 N -0.837 5.837 11 C 0.000 4.000 12 C -0.226 4.226 13 C 0.136 3.864 14 C -0.578 4.578 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.569 5.569 18 Si 0.759 3.241 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.153 1.153 22 C -0.053 4.053 23 C -0.176 4.176 24 C -0.063 4.063 25 N -0.215 5.215 26 C -0.066 4.066 27 C -0.199 4.199 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.177 0.823 43 H 0.201 0.799 44 H 0.180 0.820 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.493 14.137 -1.359 16.057 hybrid contribution 0.576 -1.026 -0.550 1.298 sum -6.917 13.111 -1.909 14.946 Atomic orbital electron populations 1.23917 0.95421 1.02440 1.01386 1.22934 0.96773 0.98190 0.99497 1.21109 0.98142 0.96314 0.97261 1.19819 0.91769 0.96570 0.83721 0.88129 1.55689 1.59495 1.38742 1.32449 1.01356 0.72596 0.73204 0.72543 1.93536 1.71435 1.85098 1.49435 1.93564 1.84040 1.49714 1.71108 1.57610 1.29821 1.43511 1.52728 1.21167 1.00708 0.90915 0.87229 1.22179 1.01570 1.01712 0.97141 1.18741 0.89119 0.85589 0.92985 1.22053 1.23250 0.98596 1.13936 0.89075 1.25748 0.97848 0.94892 1.00047 1.70075 1.37124 1.07673 1.42064 0.86004 0.79734 0.78927 0.79471 1.20182 1.22292 1.15283 1.20468 0.93898 0.95534 0.95369 1.22148 1.02606 0.91995 1.00809 1.23224 0.89051 0.99558 0.94516 1.67699 1.14599 1.28408 1.10824 1.22864 1.00295 0.87555 0.95925 1.22458 0.95227 1.00774 1.01397 0.88929 0.86491 0.89394 0.88286 0.89260 0.74127 0.90694 0.89900 0.93366 0.93430 0.89304 0.96542 0.96439 0.92952 0.82258 0.79880 0.81963 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.89 14.32 67.78 0.97 -3.92 16 2 C -0.16 -4.55 8.21 25.64 0.21 -4.34 16 3 C -0.09 -2.19 5.32 29.85 0.16 -2.03 16 4 C 0.19 5.43 2.33 44.24 0.10 5.53 16 5 H 0.10 3.71 5.13 -2.39 -0.01 3.69 16 6 N -1.10 -30.49 4.94 -172.52 -0.85 -31.34 16 7 S 2.79 104.14 5.80 -56.49 -0.33 103.81 16 8 O -1.01 -39.18 17.54 -128.00 -2.25 -41.43 16 9 O -1.00 -44.75 15.24 -128.00 -1.95 -46.70 16 10 N -1.00 -39.03 2.83 -519.86 -1.47 -40.51 16 11 C 0.13 4.09 6.13 86.38 0.53 4.62 16 12 C -0.17 -5.09 10.21 71.98 0.74 -4.36 16 13 C 0.26 12.58 5.35 85.63 0.46 13.03 16 14 C -0.54 -26.11 7.91 25.60 0.20 -25.91 16 15 H 0.09 3.96 4.03 -2.91 -0.01 3.95 16 16 C 0.01 0.72 5.46 84.65 0.46 1.18 16 17 N -0.93 -52.60 13.29 21.45 0.28 -52.32 16 18 Si 0.93 38.86 28.75 68.60 1.97 40.83 16 19 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.30 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.23 -8.19 5.20 99.48 0.52 -7.67 16 22 C -0.04 -1.12 4.84 -19.67 -0.10 -1.22 16 23 C -0.16 -3.14 9.40 22.36 0.21 -2.93 16 24 C 0.09 1.91 11.18 84.68 0.95 2.86 16 25 N -0.51 -13.09 10.36 -195.85 -2.03 -15.12 16 26 C 0.09 2.42 11.18 84.68 0.95 3.37 16 27 C -0.18 -5.23 8.50 22.36 0.19 -5.04 16 28 H 0.09 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.12 2.26 7.84 -2.91 -0.02 2.23 16 30 H 0.09 3.16 8.00 -2.91 -0.02 3.13 16 31 H 0.10 1.83 7.79 -2.39 -0.02 1.81 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.42 8.59 7.68 -96.74 -0.74 7.85 16 34 H 0.07 2.49 8.13 -2.39 -0.02 2.47 16 35 H 0.08 2.27 7.89 -2.39 -0.02 2.25 16 36 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 37 H 0.05 1.55 8.01 -2.39 -0.02 1.53 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.02 0.86 7.98 -2.39 -0.02 0.84 16 40 H 0.02 0.97 6.89 -2.39 -0.02 0.95 16 41 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 42 H 0.16 2.17 6.99 -2.91 -0.02 2.15 16 43 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.13 4.28 4.22 -2.91 -0.01 4.27 16 Total: -1.00 -67.09 375.93 -0.52 -67.61 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.07 Total: 34.31 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 6.03 Total: -19.15 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -4.07 Total: -139.29 kcal Atomic # 8 Polarization: -83.93 SS G_CDS: -4.20 Total: -88.13 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.97 Total: 40.83 kcal Atomic # 16 Polarization: 104.14 SS G_CDS: -0.33 Total: 103.81 kcal Total: -67.09 -0.52 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800055641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.043 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds