Wall clock time and date at job start Tue Mar 31 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46915 * 2 1 4 4 C 1.46492 * 120.00271 * 265.15078 * 3 2 1 5 5 C 1.50707 * 109.46848 * 275.44111 * 4 3 2 6 6 H 1.07997 * 119.99986 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99779 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00157 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00032 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46834 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47030 * 120.00094 * 9 7 5 12 12 H 1.48495 * 109.47673 * 240.00537 * 9 7 5 13 13 C 1.34784 * 119.99751 * 85.14978 * 3 2 1 14 14 O 1.21276 * 120.00100 * 5.30109 * 13 3 2 15 15 C 1.50695 * 119.99782 * 185.30745 * 13 3 2 16 16 H 1.08997 * 109.47438 * 45.08058 * 15 13 3 17 17 C 1.53009 * 109.47167 * 285.08082 * 15 13 3 18 18 O 1.42895 * 109.46879 * 302.66521 * 17 15 13 19 19 N 1.46499 * 109.47232 * 165.08427 * 15 13 3 20 20 C 1.34776 * 119.99949 * 205.00167 * 19 15 13 21 21 O 1.21515 * 120.00261 * 359.97438 * 20 19 15 22 22 C 1.48165 * 119.99807 * 180.02562 * 20 19 15 23 23 C 1.39231 * 119.70370 * 179.72760 * 22 20 19 24 24 C 1.38662 * 119.11755 * 179.74862 * 23 22 20 25 25 C 1.38495 * 118.52154 * 0.51128 * 24 23 22 26 26 C 1.38897 * 119.33434 * 359.72449 * 25 24 23 27 27 F 1.35099 * 119.58519 * 180.02562 * 26 25 24 28 28 N 1.31708 * 120.83407 * 0.02843 * 26 25 24 29 29 H 1.08995 * 109.46868 * 64.96672 * 1 2 3 30 30 H 1.08997 * 109.46729 * 184.96615 * 1 2 3 31 31 H 1.08998 * 109.47334 * 304.96429 * 1 2 3 32 32 H 1.08993 * 109.47546 * 240.00090 * 2 1 3 33 33 H 1.09003 * 109.46909 * 119.99740 * 2 1 3 34 34 H 1.08998 * 109.47326 * 35.43844 * 4 3 2 35 35 H 1.09001 * 109.47549 * 155.44173 * 4 3 2 36 36 H 0.97001 * 120.00003 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46583 * 62.65950 * 17 15 13 38 38 H 1.09000 * 109.46974 * 182.66054 * 17 15 13 39 39 H 0.96702 * 114.00191 * 180.02562 * 18 17 15 40 40 H 0.96998 * 119.99809 * 24.99492 * 19 15 13 41 41 H 1.08002 * 120.44255 * 359.97088 * 23 22 20 42 42 H 1.08004 * 120.73847 * 180.21362 * 24 23 22 43 43 H 1.08001 * 120.33760 * 179.75206 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3636 2.0362 -1.2641 5 6 3.7773 1.6790 -1.6451 6 1 4.3603 1.0296 -1.0089 7 6 4.3263 2.1815 -2.8058 8 7 3.6165 2.9727 -3.5801 9 14 6.0788 1.7395 -3.2777 10 1 6.6576 0.8414 -2.2463 11 1 6.0780 1.0476 -4.5917 12 1 6.8938 2.9773 -3.3704 13 6 2.1499 2.0495 1.1631 14 8 1.9567 1.4788 2.2156 15 6 2.5369 3.5059 1.1557 16 1 1.9533 4.0332 0.4011 17 6 4.0265 3.6362 0.8312 18 8 4.7884 2.8934 1.7850 19 7 2.2715 4.0884 2.4734 20 6 2.0495 5.4124 2.5926 21 8 2.0699 6.1231 1.6071 22 6 1.7816 6.0017 3.9254 23 6 1.5587 7.3710 4.0421 24 6 1.3039 7.9088 5.2946 25 6 1.2916 7.0598 6.3887 26 6 1.5271 5.7040 6.2007 27 9 1.5158 4.8712 7.2644 28 7 1.7615 5.2199 4.9984 29 1 -0.3633 0.4348 -0.9311 30 1 -0.3633 -1.0238 0.0890 31 1 -0.3634 0.5889 0.8422 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6812 1.7011 -2.0452 35 1 2.2805 3.1168 -1.1481 36 1 4.0029 3.3265 -4.3965 37 1 4.2160 3.2455 -0.1686 38 1 4.3168 4.6860 0.8723 39 1 5.7439 2.9314 1.6407 40 1 2.2555 3.5212 3.2601 41 1 1.5803 8.0054 3.1683 42 1 1.1240 8.9669 5.4148 43 1 1.1003 7.4480 7.3782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845270087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:14 Heat of formation + Delta-G solvation = -141.681223 kcal Electronic energy + Delta-G solvation = -30056.087181 eV Core-core repulsion = 25629.573332 eV Total energy + Delta-G solvation = -4426.513850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.11046 -41.96170 -41.13863 -39.85125 -37.78386 -37.10507 -35.61594 -34.73734 -33.94783 -32.60840 -32.09800 -30.16983 -29.01558 -26.21870 -25.32200 -24.98419 -24.52462 -23.48488 -21.81324 -20.61891 -19.55406 -18.92796 -18.51925 -18.43073 -17.86265 -17.57041 -17.29428 -17.20250 -16.88008 -16.59843 -16.47969 -16.25774 -15.83159 -15.56822 -15.02608 -14.85441 -14.61892 -14.44584 -14.30384 -14.23005 -14.12612 -13.81971 -13.59972 -13.30945 -13.19111 -13.08972 -12.75709 -12.70259 -12.59807 -12.15823 -11.86139 -11.78791 -11.68598 -11.21321 -11.19608 -10.87762 -10.64358 -10.59555 -10.35837 -10.13825 -9.53547 -8.20827 -6.33657 -0.62508 -0.04307 1.41103 1.43754 1.45901 1.54485 1.58458 1.66965 2.23166 2.37152 2.44401 2.56379 3.08638 3.20091 3.24588 3.47410 3.62808 3.77863 3.92802 3.98161 4.17673 4.22770 4.35744 4.37600 4.49519 4.52178 4.62034 4.79191 4.81828 4.85066 4.90350 4.94978 5.02670 5.09930 5.20093 5.29898 5.44850 5.65205 5.78658 6.02630 6.10832 6.43004 6.47693 6.76024 6.80662 6.90460 7.16179 7.36624 8.84809 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.003265 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.129648 B = 8573.247691 C = 9433.255298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.592 5.592 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.521 3.479 14 O -0.578 6.578 15 C 0.137 3.863 16 H 0.114 0.886 17 C 0.063 3.937 18 O -0.577 6.577 19 N -0.683 5.683 20 C 0.566 3.434 21 O -0.555 6.555 22 C 0.092 3.908 23 C -0.116 4.116 24 C -0.033 4.033 25 C -0.147 4.147 26 C 0.284 3.716 27 F -0.118 7.118 28 N -0.523 5.523 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.269 0.731 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.393 0.607 40 H 0.417 0.583 41 H 0.167 0.833 42 H 0.206 0.794 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 10.045 15.559 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.123 3.877 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.175 4.175 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.309 3.691 14 O -0.460 6.460 15 C 0.028 3.972 16 H 0.132 0.868 17 C -0.016 4.016 18 O -0.385 6.385 19 N -0.334 5.334 20 C 0.352 3.648 21 O -0.433 6.433 22 C -0.044 4.044 23 C -0.137 4.137 24 C -0.058 4.058 25 C -0.167 4.167 26 C 0.127 3.873 27 F -0.097 7.097 28 N -0.241 5.241 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.242 0.758 40 H 0.255 0.745 41 H 0.185 0.815 42 H 0.223 0.777 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.681 9.239 15.336 18.505 hybrid contribution 1.348 -0.099 -0.365 1.400 sum -3.332 9.140 14.971 17.854 Atomic orbital electron populations 1.22026 0.94673 1.03089 1.01294 1.21432 0.95042 0.82078 1.02605 1.48170 1.62566 1.14363 1.07117 1.19294 0.95501 0.92961 0.79956 1.21542 0.98657 1.30386 1.07009 0.92520 1.25608 1.01465 0.94588 0.95836 1.70015 1.38447 1.32768 1.14026 0.85571 0.80136 0.78209 0.78197 1.19329 1.20633 1.20304 1.20221 0.76478 0.88677 0.83754 1.90566 1.53796 1.69941 1.31671 1.20853 0.97395 0.92238 0.86683 0.86806 1.22725 0.88587 0.95496 0.94773 1.86426 1.23256 1.74390 1.54387 1.45613 1.69364 1.08323 1.10122 1.18279 0.76565 0.81845 0.88144 1.90790 1.53300 1.60816 1.38419 1.20543 1.01920 0.92223 0.89762 1.22470 0.96293 0.93302 1.01626 1.22105 0.91821 1.03033 0.88824 1.22538 0.99893 0.89988 1.04300 1.18503 0.99312 0.87468 0.82001 1.91638 1.93601 1.72915 1.51549 1.66603 1.15256 1.42787 0.99425 0.92489 0.89243 0.94185 0.89668 0.91642 0.95578 0.95216 0.92204 0.88705 0.92958 0.75849 0.74472 0.81530 0.77674 0.78774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 10.21 71.98 0.73 -4.07 16 2 C 0.11 4.14 6.14 86.38 0.53 4.67 16 3 N -0.59 -25.48 2.47 -826.15 -2.04 -27.52 16 4 C 0.24 11.45 4.65 85.64 0.40 11.85 16 5 C -0.54 -26.73 6.96 25.60 0.18 -26.55 16 6 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.03 1.33 5.46 84.66 0.46 1.79 16 8 N -0.91 -48.63 13.29 21.45 0.28 -48.35 16 9 Si 0.95 40.23 29.54 68.60 2.03 42.26 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 13 C 0.52 23.03 6.53 87.65 0.57 23.60 16 14 O -0.58 -27.35 15.49 -3.02 -0.05 -27.40 16 15 C 0.14 5.65 1.93 44.25 0.09 5.73 16 16 H 0.11 4.88 6.24 -2.39 -0.01 4.86 16 17 C 0.06 2.53 6.59 71.99 0.47 3.00 16 18 O -0.58 -22.03 13.12 -148.98 -1.95 -23.99 16 19 N -0.68 -26.13 4.93 -448.67 -2.21 -28.34 16 20 C 0.57 19.94 7.78 86.88 0.68 20.61 16 21 O -0.55 -21.44 15.98 -3.76 -0.06 -21.50 16 22 C 0.09 2.58 6.75 41.88 0.28 2.87 16 23 C -0.12 -2.16 9.63 22.61 0.22 -1.94 16 24 C -0.03 -0.32 10.16 22.43 0.23 -0.10 16 25 C -0.15 -1.73 10.09 22.49 0.23 -1.50 16 26 C 0.28 6.28 8.41 84.87 0.71 6.99 16 27 F -0.12 -2.76 17.29 44.97 0.78 -1.98 16 28 N -0.52 -15.13 9.56 -185.97 -1.78 -16.90 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 3.09 8.03 -2.39 -0.02 3.07 16 33 H 0.07 2.50 7.50 -2.39 -0.02 2.48 16 34 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 35 H 0.03 1.47 5.56 -2.39 -0.01 1.45 16 36 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.10 4.22 4.43 -2.39 -0.01 4.21 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.39 11.30 9.12 -74.06 -0.68 10.62 16 40 H 0.42 16.61 7.04 -92.71 -0.65 15.96 16 41 H 0.17 2.83 7.64 -2.91 -0.02 2.80 16 42 H 0.21 0.00 8.06 -2.91 -0.02 -0.03 16 43 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -69.24 372.73 0.54 -68.70 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.24 Total: 38.07 kcal Atomic # 6 Polarization: 41.17 SS G_CDS: 5.78 Total: 46.95 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -5.74 Total: -121.12 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -2.06 Total: -72.89 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.24 0.54 -68.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845270087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.977 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds