Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40094 * 126.03621 * 2 1 4 4 C 1.30836 * 108.20592 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.89755 * 180.02562 * 4 3 2 6 6 C 1.52998 * 117.50030 * 163.77082 * 5 4 3 7 7 C 1.52993 * 117.50098 * 95.10812 * 5 4 3 8 8 C 1.39872 * 108.19835 * 359.77812 * 4 3 2 9 9 C 1.34947 * 126.04088 * 180.02562 * 2 1 3 10 10 S 1.76201 * 126.12375 * 359.93919 * 9 2 1 11 11 O 1.42094 * 106.40360 * 336.46342 * 10 9 2 12 12 O 1.42101 * 106.40061 * 203.53831 * 10 9 2 13 13 N 1.65602 * 107.21409 * 90.00616 * 10 9 2 14 14 C 1.46496 * 120.00281 * 90.00002 * 13 10 9 15 15 C 1.50706 * 109.47106 * 264.99512 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 C 1.46507 * 119.99575 * 269.99554 * 13 10 9 24 24 C 1.52998 * 109.46948 * 265.00178 * 23 13 10 25 25 C 1.53003 * 117.49745 * 243.74629 * 24 23 13 26 26 C 1.53005 * 117.49777 * 175.08712 * 24 23 13 27 27 H 1.08996 * 109.46936 * 269.97190 * 1 2 3 28 28 H 1.08997 * 109.46952 * 29.97551 * 1 2 3 29 29 H 1.09005 * 109.46770 * 149.97774 * 1 2 3 30 30 H 1.09006 * 115.54789 * 309.44144 * 5 4 3 31 31 H 1.09007 * 117.49772 * 0.02562 * 6 5 4 32 32 H 1.08998 * 117.50134 * 145.01583 * 6 5 4 33 33 H 1.09000 * 117.49899 * 214.97820 * 7 5 4 34 34 H 1.09003 * 117.49887 * 359.97438 * 7 5 4 35 35 H 1.08004 * 126.03478 * 180.23061 * 8 4 3 36 36 H 1.09001 * 109.47001 * 144.99803 * 14 13 10 37 37 H 1.09000 * 109.47574 * 25.00019 * 14 13 10 38 38 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47044 * 25.00454 * 23 13 10 40 40 H 1.09003 * 109.47057 * 145.00379 * 23 13 10 41 41 H 1.08997 * 115.55547 * 29.41875 * 24 23 13 42 42 H 1.08999 * 117.50006 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.49698 * 145.02265 * 25 24 23 44 44 H 1.08997 * 117.49844 * 214.97724 * 26 24 23 45 45 H 1.08999 * 117.49592 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1329 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 4.7496 1.6238 -0.0002 6 6 6.0902 0.9910 0.3783 7 6 5.3910 1.9434 1.3515 8 6 3.5437 -0.6664 0.0042 9 6 2.2590 -1.0912 -0.0005 10 16 1.7193 -2.7685 0.0003 11 8 0.4073 -2.7676 0.5457 12 8 2.7866 -3.5331 0.5439 13 7 1.5680 -3.2354 -1.5814 14 6 2.7088 -3.8305 -2.2818 15 6 3.4449 -2.7588 -3.0440 16 1 3.0979 -1.7367 -3.0096 17 6 4.5613 -3.0833 -3.7851 18 7 4.9835 -4.3282 -3.8273 19 14 5.4742 -1.7548 -4.7292 20 1 4.8017 -0.4476 -4.5194 21 1 6.8748 -1.6752 -4.2424 22 1 5.4714 -2.0857 -6.1769 23 6 0.2932 -3.0533 -2.2800 24 6 -0.5206 -4.3465 -2.2014 25 6 -0.8254 -5.0703 -3.5144 26 6 -1.9390 -4.3246 -2.7748 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 4.7588 2.4062 -0.7592 31 1 6.0934 -0.0704 0.6267 32 1 6.9814 1.3571 -0.1313 33 1 5.8225 2.9358 1.4817 34 1 4.9339 1.5092 2.2407 35 1 4.4211 -1.2962 0.0085 36 1 2.3520 -4.5906 -2.9768 37 1 3.3818 -4.2882 -1.5569 38 1 5.7692 -4.5563 -4.3485 39 1 -0.2655 -2.2433 -1.8114 40 1 0.4834 -2.8067 -3.3246 41 1 -0.3445 -4.9599 -1.3177 42 1 -0.4458 -4.6255 -4.4342 43 1 -0.8502 -6.1599 -3.4945 44 1 -2.6958 -4.9238 -2.2686 45 1 -2.2921 -3.3889 -3.2084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906920902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = 61.353919 kcal Electronic energy + Delta-G solvation = -28791.347909 eV Core-core repulsion = 24939.851500 eV Total energy + Delta-G solvation = -3851.496409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.06609 -37.70146 -37.14116 -36.81379 -35.47975 -34.91276 -32.81177 -32.47195 -30.24021 -27.99427 -26.80551 -25.49911 -23.20601 -22.68171 -22.42510 -22.10143 -21.60270 -20.49366 -19.49039 -18.34719 -17.47739 -17.01752 -16.48047 -15.90245 -15.75020 -15.28888 -15.01284 -14.81240 -14.55011 -14.29470 -14.14427 -13.70861 -13.32267 -12.93663 -12.66287 -12.59890 -12.49573 -12.08147 -11.93497 -11.64583 -11.59883 -11.45557 -11.36599 -11.31009 -11.23640 -11.19618 -10.90888 -10.74871 -10.63937 -10.56719 -10.21466 -10.20067 -10.13408 -9.80664 -9.61895 -9.24660 -8.52873 -8.42258 -8.20999 -6.14437 -4.20673 0.75309 1.57220 2.52055 2.72255 3.22982 3.31791 3.35226 3.46211 3.87964 4.01836 4.10961 4.35510 4.41019 4.68011 4.92467 4.94699 4.96090 4.99942 5.10407 5.18648 5.21810 5.25714 5.34880 5.46145 5.54310 5.61490 5.65407 5.70089 5.77055 5.81542 5.89098 6.03080 6.08665 6.12505 6.14245 6.21694 6.31636 6.41349 6.53183 6.74461 6.93899 7.22360 7.33752 7.50777 7.69853 7.81976 8.08836 8.84147 9.46149 10.93593 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.006107 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.882236 B = 4584.038163 C = 6630.815946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.318 5.318 3 N -0.260 5.260 4 C 0.084 3.916 5 C -0.078 4.078 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.128 4.128 9 C -0.478 4.478 10 S 2.703 3.297 11 O -0.969 6.969 12 O -0.939 6.939 13 N -0.970 5.970 14 C 0.243 3.757 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.284 1.284 23 C 0.161 3.839 24 C -0.161 4.161 25 C -0.174 4.174 26 C -0.181 4.181 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 6.665 5.384 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.102 5.102 3 N -0.085 5.085 4 C -0.081 4.081 5 C -0.098 4.098 6 C -0.203 4.203 7 C -0.205 4.205 8 C -0.160 4.160 9 C -0.685 4.685 10 S 2.786 3.214 11 O -0.959 6.959 12 O -0.928 6.928 13 N -0.810 5.810 14 C 0.122 3.878 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.210 1.210 23 C 0.035 3.965 24 C -0.181 4.181 25 C -0.211 4.211 26 C -0.219 4.219 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.182 0.818 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.265 7.058 6.033 12.430 hybrid contribution 1.317 0.669 -1.088 1.835 sum -6.948 7.727 4.944 11.508 Atomic orbital electron populations 1.22226 0.73326 1.05006 1.04557 1.47987 1.06020 1.01771 1.54449 1.77048 1.01487 1.08611 1.21395 1.21477 0.92117 0.93093 1.01402 1.20089 0.89076 1.00457 1.00151 1.23082 0.94622 0.99972 1.02574 1.23003 1.03409 1.00805 0.93254 1.21383 0.95924 0.94362 1.04333 1.33953 1.00188 1.16986 1.17337 1.01948 0.73265 0.72581 0.73619 1.93530 1.37965 1.86863 1.77535 1.93597 1.56490 1.65931 1.76815 1.57400 1.19122 1.73930 1.30502 1.19355 0.81352 0.93974 0.93159 1.21541 1.11405 0.95006 1.30029 0.92050 1.24883 0.96869 0.95362 0.96362 1.69939 1.24767 1.17087 1.40779 0.86575 0.79975 0.82151 0.79642 1.19671 1.20647 1.20977 1.20726 0.82250 0.94339 0.99217 1.22775 0.97006 1.00229 0.98121 1.23025 1.02575 0.99220 0.96262 1.22928 0.91667 1.02566 1.04690 0.89682 0.88909 0.88487 0.86238 0.87737 0.87927 0.88312 0.88682 0.81848 0.93378 0.92774 0.92601 0.91559 0.89417 0.87750 0.88426 0.89099 0.89054 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.54 59.85 0.63 1.82 16 2 N -0.32 -5.56 4.01 -67.26 -0.27 -5.83 16 3 N -0.26 -4.73 12.58 33.67 0.42 -4.31 16 4 C 0.08 1.49 6.85 -82.41 -0.56 0.93 16 5 C -0.08 -1.12 6.33 -91.78 -0.58 -1.70 16 6 C -0.17 -2.07 10.02 -26.69 -0.27 -2.34 16 7 C -0.17 -1.94 10.24 -26.70 -0.27 -2.22 16 8 C -0.13 -2.48 9.86 -40.01 -0.39 -2.87 16 9 C -0.48 -9.15 7.00 -17.23 -0.12 -9.27 16 10 S 2.70 52.53 5.60 -107.50 -0.60 51.92 16 11 O -0.97 -17.83 14.77 -57.17 -0.84 -18.67 16 12 O -0.94 -20.99 16.40 -57.17 -0.94 -21.92 16 13 N -0.97 -19.03 2.77 -115.66 -0.32 -19.35 16 14 C 0.24 5.75 5.43 -5.19 -0.03 5.72 16 15 C -0.54 -13.85 9.38 -34.44 -0.32 -14.17 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.16 2.63 5.63 -4.04 -0.02 2.61 16 24 C -0.16 -2.40 6.01 -90.62 -0.54 -2.95 16 25 C -0.17 -2.33 10.18 -26.69 -0.27 -2.60 16 26 C -0.18 -2.16 10.26 -26.69 -0.27 -2.43 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.23 4.73 -51.93 -0.25 0.98 16 30 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.10 1.38 7.14 -51.93 -0.37 1.01 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.16 3.11 7.38 -52.48 -0.39 2.72 16 36 H 0.05 1.18 8.11 -51.93 -0.42 0.75 16 37 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.07 0.94 5.66 -51.93 -0.29 0.64 16 40 H 0.09 1.45 7.84 -51.93 -0.41 1.04 16 41 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.10 1.33 8.03 -51.93 -0.42 0.91 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -31.51 386.81 -10.81 -42.32 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.67 Total: 6.03 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -3.13 Total: -27.75 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.57 Total: -53.42 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.78 Total: -40.60 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.60 Total: 51.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.51 -10.81 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.675 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds