Wall clock time and date at job start Tue Mar 31 2020 22:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40094 * 126.03621 * 2 1 4 4 C 1.30836 * 108.20592 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.89755 * 180.02562 * 4 3 2 6 6 C 1.52998 * 117.50030 * 163.77082 * 5 4 3 7 7 C 1.52993 * 117.50098 * 95.10812 * 5 4 3 8 8 C 1.39872 * 108.19835 * 359.77812 * 4 3 2 9 9 C 1.34947 * 126.04088 * 180.02562 * 2 1 3 10 10 S 1.76201 * 126.12375 * 359.93919 * 9 2 1 11 11 O 1.42094 * 106.40360 * 336.46342 * 10 9 2 12 12 O 1.42101 * 106.40061 * 203.53831 * 10 9 2 13 13 N 1.65602 * 107.21409 * 90.00616 * 10 9 2 14 14 C 1.46496 * 120.00281 * 90.00002 * 13 10 9 15 15 C 1.50706 * 109.47106 * 264.99512 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 C 1.46507 * 119.99575 * 269.99554 * 13 10 9 24 24 C 1.52998 * 109.46948 * 265.00178 * 23 13 10 25 25 C 1.53003 * 117.49745 * 243.74629 * 24 23 13 26 26 C 1.53005 * 117.49777 * 175.08712 * 24 23 13 27 27 H 1.08996 * 109.46936 * 269.97190 * 1 2 3 28 28 H 1.08997 * 109.46952 * 29.97551 * 1 2 3 29 29 H 1.09005 * 109.46770 * 149.97774 * 1 2 3 30 30 H 1.09006 * 115.54789 * 309.44144 * 5 4 3 31 31 H 1.09007 * 117.49772 * 0.02562 * 6 5 4 32 32 H 1.08998 * 117.50134 * 145.01583 * 6 5 4 33 33 H 1.09000 * 117.49899 * 214.97820 * 7 5 4 34 34 H 1.09003 * 117.49887 * 359.97438 * 7 5 4 35 35 H 1.08004 * 126.03478 * 180.23061 * 8 4 3 36 36 H 1.09001 * 109.47001 * 144.99803 * 14 13 10 37 37 H 1.09000 * 109.47574 * 25.00019 * 14 13 10 38 38 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47044 * 25.00454 * 23 13 10 40 40 H 1.09003 * 109.47057 * 145.00379 * 23 13 10 41 41 H 1.08997 * 115.55547 * 29.41875 * 24 23 13 42 42 H 1.08999 * 117.50006 * 0.02562 * 25 24 23 43 43 H 1.09001 * 117.49698 * 145.02265 * 25 24 23 44 44 H 1.08997 * 117.49844 * 214.97724 * 26 24 23 45 45 H 1.08999 * 117.49592 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1329 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 4.7496 1.6238 -0.0002 6 6 6.0902 0.9910 0.3783 7 6 5.3910 1.9434 1.3515 8 6 3.5437 -0.6664 0.0042 9 6 2.2590 -1.0912 -0.0005 10 16 1.7193 -2.7685 0.0003 11 8 0.4073 -2.7676 0.5457 12 8 2.7866 -3.5331 0.5439 13 7 1.5680 -3.2354 -1.5814 14 6 2.7088 -3.8305 -2.2818 15 6 3.4449 -2.7588 -3.0440 16 1 3.0979 -1.7367 -3.0096 17 6 4.5613 -3.0833 -3.7851 18 7 4.9835 -4.3282 -3.8273 19 14 5.4742 -1.7548 -4.7292 20 1 4.8017 -0.4476 -4.5194 21 1 6.8748 -1.6752 -4.2424 22 1 5.4714 -2.0857 -6.1769 23 6 0.2932 -3.0533 -2.2800 24 6 -0.5206 -4.3465 -2.2014 25 6 -0.8254 -5.0703 -3.5144 26 6 -1.9390 -4.3246 -2.7748 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 4.7588 2.4062 -0.7592 31 1 6.0934 -0.0704 0.6267 32 1 6.9814 1.3571 -0.1313 33 1 5.8225 2.9358 1.4817 34 1 4.9339 1.5092 2.2407 35 1 4.4211 -1.2962 0.0085 36 1 2.3520 -4.5906 -2.9768 37 1 3.3818 -4.2882 -1.5569 38 1 5.7692 -4.5563 -4.3485 39 1 -0.2655 -2.2433 -1.8114 40 1 0.4834 -2.8067 -3.3246 41 1 -0.3445 -4.9599 -1.3177 42 1 -0.4458 -4.6255 -4.4342 43 1 -0.8502 -6.1599 -3.4945 44 1 -2.6958 -4.9238 -2.2686 45 1 -2.2921 -3.3889 -3.2084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906920902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:17 Heat of formation + Delta-G solvation = 42.272969 kcal Electronic energy + Delta-G solvation = -28792.175321 eV Core-core repulsion = 24939.851500 eV Total energy + Delta-G solvation = -3852.323821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43023 -38.96861 -38.53305 -38.06458 -37.11082 -36.45919 -34.41701 -34.03602 -31.65764 -29.74294 -27.98906 -27.10984 -24.53836 -24.29795 -23.60211 -23.13330 -22.89288 -21.71628 -20.78812 -19.81770 -18.90369 -18.70240 -18.28669 -17.48075 -16.91726 -16.66248 -16.41176 -16.27701 -16.09025 -15.45481 -15.32103 -15.06545 -14.82783 -14.42910 -14.29303 -13.90476 -13.80062 -13.53577 -13.38439 -13.21804 -13.08399 -13.03687 -12.80878 -12.64891 -12.58892 -12.44838 -12.37985 -12.26909 -12.11404 -11.99332 -11.75610 -11.69197 -11.29793 -11.21692 -10.75991 -10.62517 -10.55777 -9.90198 -9.74818 -8.18416 -6.30628 -0.81755 0.11892 1.26220 1.35027 1.38223 1.41566 1.51698 1.91097 2.41055 2.51453 2.81757 2.97919 3.13340 3.16314 3.30287 3.72902 3.80260 3.90108 3.94865 4.02018 4.15591 4.22379 4.24219 4.25324 4.27581 4.38341 4.45549 4.62207 4.65195 4.76858 4.81933 4.88554 4.93443 4.96753 5.11193 5.13235 5.24036 5.27991 5.31601 5.35099 5.38692 5.45215 5.61975 5.70831 5.84134 6.07421 6.31841 6.79899 7.39275 8.89850 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.006107 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.882236 B = 4584.038163 C = 6630.815946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.314 5.314 3 N -0.269 5.269 4 C 0.081 3.919 5 C -0.103 4.103 6 C -0.167 4.167 7 C -0.144 4.144 8 C -0.154 4.154 9 C -0.489 4.489 10 S 2.717 3.283 11 O -0.958 6.958 12 O -0.974 6.974 13 N -0.972 5.972 14 C 0.260 3.740 15 C -0.541 4.541 16 H 0.059 0.941 17 C 0.022 3.978 18 N -0.921 5.921 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.154 3.846 24 C -0.188 4.188 25 C -0.181 4.181 26 C -0.150 4.150 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 8.748 5.154 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.099 5.099 3 N -0.095 5.095 4 C -0.083 4.083 5 C -0.123 4.123 6 C -0.205 4.205 7 C -0.182 4.182 8 C -0.186 4.186 9 C -0.698 4.698 10 S 2.802 3.198 11 O -0.947 6.947 12 O -0.964 6.964 13 N -0.811 5.811 14 C 0.137 3.863 15 C -0.580 4.580 16 H 0.077 0.923 17 C -0.179 4.179 18 N -0.560 5.560 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.204 1.204 23 C 0.029 3.971 24 C -0.209 4.209 25 C -0.218 4.218 26 C -0.188 4.188 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.475 9.139 5.806 14.388 hybrid contribution 1.589 0.021 -0.969 1.861 sum -7.886 9.160 4.838 13.019 Atomic orbital electron populations 1.22669 0.71078 1.06641 1.06255 1.48377 1.07293 1.00997 1.53218 1.77011 1.01731 1.08872 1.21844 1.21956 0.93130 0.92814 1.00422 1.20309 0.88478 1.00993 1.02509 1.23176 0.94589 0.99585 1.03125 1.23093 1.01593 1.01882 0.91639 1.21509 0.95903 0.95456 1.05760 1.33752 1.00735 1.17042 1.18236 1.01365 0.72810 0.72436 0.73235 1.93528 1.37081 1.86902 1.77237 1.93551 1.57854 1.67366 1.77620 1.57266 1.19354 1.73982 1.30492 1.18865 0.82014 0.93363 0.92065 1.21732 1.11467 0.95114 1.29674 0.92307 1.25610 0.97772 0.97140 0.97354 1.70040 1.25418 1.18767 1.41817 0.85667 0.78854 0.79682 0.78530 1.19479 1.20189 1.20373 1.20988 0.81072 0.96135 0.98898 1.22707 0.99725 0.99883 0.98545 1.23079 1.03742 0.99676 0.95337 1.23062 0.90254 1.03051 1.02402 0.87946 0.86189 0.88008 0.85089 0.89224 0.85834 0.85325 0.89306 0.82855 0.94625 0.95695 0.92435 0.89120 0.89872 0.88966 0.88925 0.88618 0.87275 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 10.54 127.77 1.35 3.10 16 2 N -0.31 -10.66 4.01 -366.71 -1.47 -12.13 16 3 N -0.27 -9.48 12.58 -47.39 -0.60 -10.07 16 4 C 0.08 2.85 6.85 43.10 0.30 3.14 16 5 C -0.10 -2.83 6.33 -11.54 -0.07 -2.90 16 6 C -0.17 -4.01 10.02 30.62 0.31 -3.70 16 7 C -0.14 -3.07 10.24 30.62 0.31 -2.76 16 8 C -0.15 -6.07 9.86 21.99 0.22 -5.86 16 9 C -0.49 -18.77 7.00 83.54 0.58 -18.19 16 10 S 2.72 107.17 5.60 -56.49 -0.32 106.85 16 11 O -0.96 -34.55 14.77 -128.00 -1.89 -36.44 16 12 O -0.97 -45.41 16.40 -128.00 -2.10 -47.51 16 13 N -0.97 -38.80 2.77 -519.84 -1.44 -40.23 16 14 C 0.26 12.77 5.43 85.64 0.47 13.24 16 15 C -0.54 -28.23 9.38 25.60 0.24 -27.99 16 16 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 17 C 0.02 1.15 5.46 84.65 0.46 1.62 16 18 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 19 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.15 4.94 5.63 86.38 0.49 5.43 16 24 C -0.19 -5.47 6.01 -10.79 -0.06 -5.53 16 25 C -0.18 -4.69 10.18 30.62 0.31 -4.38 16 26 C -0.15 -3.19 10.26 30.62 0.31 -2.88 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.10 2.34 4.73 -2.38 -0.01 2.33 16 30 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.09 2.41 7.14 -2.38 -0.02 2.39 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.15 6.18 7.38 -2.91 -0.02 6.16 16 36 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 37 H 0.03 1.37 6.91 -2.39 -0.02 1.35 16 38 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.09 2.40 5.66 -2.39 -0.01 2.39 16 40 H 0.08 2.72 7.84 -2.39 -0.02 2.70 16 41 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.37 386.81 0.70 -67.67 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.00 Total: 26.96 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 5.21 Total: -47.67 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -3.22 Total: -114.41 kcal Atomic # 8 Polarization: -79.96 SS G_CDS: -3.99 Total: -83.95 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 107.17 SS G_CDS: -0.32 Total: 106.85 kcal Total: -68.37 0.70 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.939 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds