Wall clock time and date at job start Tue Mar 31 2020 22:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46489 * 109.47232 * 2 1 4 4 C 1.46498 * 120.00277 * 275.00002 * 3 2 1 5 5 C 1.50701 * 109.46876 * 275.00051 * 4 3 2 6 6 H 1.07996 * 120.00051 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00177 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99470 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00133 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47283 * 60.00647 * 9 7 5 11 11 H 1.48510 * 109.46948 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47583 * 300.00216 * 9 7 5 13 13 S 1.65606 * 120.00134 * 94.99919 * 3 2 1 14 14 O 1.42103 * 106.40163 * 336.45777 * 13 3 2 15 15 O 1.42101 * 106.40328 * 203.54243 * 13 3 2 16 16 N 1.65602 * 107.21795 * 89.99868 * 13 3 2 17 17 C 1.46493 * 119.99990 * 65.00056 * 16 13 3 18 18 H 1.09003 * 109.25414 * 335.52683 * 17 16 13 19 19 C 1.52727 * 109.23200 * 216.06581 * 17 16 13 20 20 C 1.53320 * 108.43253 * 188.41457 * 19 17 16 21 21 C 1.52776 * 108.36095 * 69.84495 * 20 19 17 22 22 C 1.50490 * 110.55674 * 309.14219 * 21 20 19 23 23 C 1.39191 * 117.97442 * 197.59241 * 22 21 20 24 24 C 1.38411 * 118.86289 * 180.24378 * 23 22 21 25 25 C 1.38235 * 118.84552 * 0.04167 * 24 23 22 26 26 N 1.31514 * 120.61265 * 359.87473 * 25 24 23 27 27 C 1.32697 * 122.39435 * 359.93268 * 26 25 24 28 28 H 1.09001 * 109.46986 * 60.00217 * 1 2 3 29 29 H 1.09007 * 109.47703 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47385 * 299.99923 * 1 2 3 31 31 H 1.09002 * 109.46801 * 239.99590 * 2 1 3 32 32 H 1.08998 * 109.46802 * 120.00281 * 2 1 3 33 33 H 1.09000 * 109.47076 * 34.99435 * 4 3 2 34 34 H 1.08995 * 109.47796 * 155.00252 * 4 3 2 35 35 H 0.97002 * 119.99755 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99980 * 245.00349 * 16 13 3 37 37 H 1.09000 * 109.63493 * 68.74734 * 19 17 16 38 38 H 1.08999 * 109.65781 * 308.10715 * 19 17 16 39 39 H 1.08999 * 109.68937 * 310.12664 * 20 19 17 40 40 H 1.09001 * 109.68863 * 189.56047 * 20 19 17 41 41 H 1.09000 * 109.25676 * 69.42082 * 21 20 19 42 42 H 1.08997 * 109.25613 * 188.86331 * 21 20 19 43 43 H 1.08005 * 120.56796 * 0.21634 * 23 22 21 44 44 H 1.08000 * 120.57494 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.69254 * 179.85135 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 -1.2638 5 6 3.4948 1.7887 -1.8822 6 1 4.1723 1.1116 -1.3835 7 6 3.8527 2.3605 -3.0848 8 7 3.0277 3.1855 -3.6919 9 14 5.5096 1.9645 -3.8509 10 1 5.6004 0.5045 -4.1069 11 1 5.6514 2.7019 -5.1322 12 1 6.5944 2.3727 -2.9227 13 16 2.4122 2.1201 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1999 16 7 4.0144 1.8136 1.7138 17 6 5.0351 2.3522 0.8115 18 1 4.5909 2.5310 -0.1677 19 6 6.1692 1.3388 0.6727 20 6 7.3179 1.9994 -0.0986 21 6 7.9472 3.0662 0.7957 22 6 6.8895 3.9812 1.3513 23 6 7.2939 5.2085 1.8685 24 6 6.3368 6.0623 2.3889 25 6 5.0125 5.6659 2.3776 26 7 4.6670 4.4991 1.8789 27 6 5.5530 3.6540 1.3675 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.3618 1.8096 -1.9453 34 1 2.0923 3.1802 -1.0756 35 1 3.2796 3.5880 -4.5377 36 1 4.2770 1.2773 2.4782 37 1 5.8150 0.4654 0.1252 38 1 6.5164 1.0393 1.6615 39 1 6.9319 2.4625 -1.0067 40 1 8.0655 1.2496 -0.3574 41 1 8.4718 2.5814 1.6190 42 1 8.6580 3.6511 0.2119 43 1 8.3367 5.4896 1.8643 44 1 6.6198 7.0214 2.7970 45 1 4.2547 6.3204 2.7823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921836018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:49 Heat of formation + Delta-G solvation = -47.037403 kcal Electronic energy + Delta-G solvation = -29761.927286 eV Core-core repulsion = 25905.730676 eV Total energy + Delta-G solvation = -3856.196609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.36182 -36.82301 -36.33553 -35.90872 -34.85716 -34.31293 -32.75166 -31.60969 -30.21860 -29.88192 -28.06630 -26.59438 -23.88454 -23.11258 -23.00653 -22.00118 -21.64086 -19.75327 -18.59852 -17.10926 -16.92098 -16.51153 -16.16580 -16.11593 -15.56031 -15.27077 -14.86116 -14.33416 -13.97762 -13.78180 -13.56643 -13.38356 -13.22288 -12.85474 -12.83477 -12.69747 -12.38980 -12.05729 -11.91883 -11.72708 -11.60471 -11.47841 -11.24325 -11.06086 -11.02192 -10.98267 -10.73844 -10.57113 -10.44966 -10.36419 -10.20927 -9.99121 -9.73709 -9.36525 -9.20161 -8.72909 -8.55302 -8.45122 -7.99050 -6.15810 -4.22430 1.35043 1.55057 1.61969 3.18151 3.25406 3.27397 3.72673 4.13915 4.29598 4.39275 4.54744 4.82912 4.93725 5.07939 5.13311 5.16540 5.20837 5.33475 5.39519 5.43658 5.51703 5.66570 5.77344 5.81296 5.84828 5.87496 5.91972 5.97486 6.01816 6.16008 6.25466 6.30949 6.38661 6.41281 6.43560 6.52695 6.69773 6.73282 6.79437 7.00747 7.39240 7.41586 7.56815 7.75236 7.85310 8.12894 8.48386 8.81767 9.41759 10.91277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.007025 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.326118 B = 3984.998957 C = 5639.627227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.996 5.996 4 C 0.243 3.757 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.264 1.264 13 S 2.782 3.218 14 O -1.009 7.009 15 O -0.949 6.949 16 N -1.113 6.113 17 C 0.185 3.815 18 H 0.153 0.847 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.183 4.183 25 C 0.099 3.901 26 N -0.443 5.443 27 C 0.126 3.874 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 -1.791 8.967 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.837 5.837 4 C 0.120 3.880 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.709 3.291 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.190 1.190 13 S 2.789 3.211 14 O -0.994 6.994 15 O -0.932 6.932 16 N -0.868 5.868 17 C 0.078 3.922 18 H 0.169 0.831 19 C -0.156 4.156 20 C -0.167 4.167 21 C -0.111 4.111 22 C -0.131 4.131 23 C -0.112 4.112 24 C -0.203 4.203 25 C -0.061 4.061 26 N -0.150 5.150 27 C -0.012 4.012 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.965 -1.278 9.178 11.592 hybrid contribution 2.245 -0.172 -0.472 2.300 sum 9.210 -1.451 8.705 12.755 Atomic orbital electron populations 1.22207 0.97121 1.01237 1.02345 1.20933 0.93566 0.83165 1.01908 1.57836 1.78717 1.22807 1.24376 1.19185 0.97046 0.92483 0.79236 1.21576 1.02555 1.28272 1.06176 0.91445 1.24967 0.97110 0.94722 0.96792 1.69927 1.35891 1.29153 1.16898 0.86862 0.84557 0.78683 0.79010 1.20034 1.21293 1.18975 1.01968 0.72553 0.74007 0.72541 1.93523 1.70653 1.76812 1.58394 1.93641 1.85067 1.29488 1.84958 1.55973 1.25290 1.67626 1.37915 1.20119 0.89436 0.87201 0.95490 0.83079 1.21774 0.94747 0.98411 1.00636 1.21729 0.97678 0.97873 0.99448 1.20403 0.95699 0.96078 0.98921 1.20487 0.95265 0.96355 1.00968 1.21465 0.99695 0.93333 0.96755 1.22072 0.94834 1.00767 1.02597 1.22731 0.94475 0.93296 0.95613 1.67754 1.37316 1.02927 1.07015 1.21706 0.88581 0.96370 0.94537 0.92139 0.92498 0.92691 0.90385 0.92062 0.94503 0.92968 0.92470 0.76717 0.89949 0.91756 0.89963 0.91090 0.90804 0.90865 0.85483 0.85379 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 37.16 0.38 -2.39 16 2 C 0.13 2.31 6.06 -4.05 -0.02 2.28 16 3 N -1.00 -20.59 2.82 -115.68 -0.33 -20.91 16 4 C 0.24 5.89 5.30 -5.19 -0.03 5.87 16 5 C -0.55 -13.43 6.91 -34.44 -0.24 -13.66 16 6 H 0.07 1.55 6.58 -52.49 -0.35 1.20 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.88 -24.42 13.29 55.43 0.74 -23.69 16 9 Si 0.88 19.27 29.54 -169.99 -5.02 14.25 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.26 -5.35 5.40 56.52 0.31 -5.04 16 13 S 2.78 57.73 5.99 -107.50 -0.64 57.09 16 14 O -1.01 -21.76 17.11 -57.17 -0.98 -22.74 16 15 O -0.95 -22.82 14.45 -57.17 -0.83 -23.64 16 16 N -1.11 -19.56 5.21 -5.99 -0.03 -19.59 16 17 C 0.19 3.35 2.52 -69.21 -0.17 3.17 16 18 H 0.15 3.25 4.26 -51.93 -0.22 3.03 16 19 C -0.12 -1.68 5.40 -26.71 -0.14 -1.83 16 20 C -0.13 -1.79 5.98 -26.68 -0.16 -1.95 16 21 C -0.07 -0.91 5.69 -28.10 -0.16 -1.07 16 22 C -0.13 -1.95 5.74 -104.60 -0.60 -2.55 16 23 C -0.09 -1.14 9.75 -39.16 -0.38 -1.52 16 24 C -0.18 -2.43 10.12 -39.52 -0.40 -2.83 16 25 C 0.10 1.60 11.19 -17.69 -0.20 1.41 16 26 N -0.44 -8.69 7.84 -9.51 -0.07 -8.77 16 27 C 0.13 2.29 6.36 -82.44 -0.52 1.77 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.06 0.97 7.61 -51.93 -0.40 0.58 16 33 H 0.04 0.94 8.11 -51.93 -0.42 0.51 16 34 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.40 5.91 8.84 -34.47 -0.30 5.60 16 37 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 38 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.08 1.36 6.39 -51.93 -0.33 1.03 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 43 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -31.94 366.67 -11.05 -42.99 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.66 Total: 11.12 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.75 Total: -11.63 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: 0.30 Total: -72.95 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.80 Total: -46.38 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: 57.73 SS G_CDS: -0.64 Total: 57.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.94 -11.05 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921836018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.049 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds