Wall clock time and date at job start Tue Mar 31 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46489 * 109.47232 * 2 1 4 4 C 1.46498 * 120.00277 * 275.00002 * 3 2 1 5 5 C 1.50701 * 109.46876 * 275.00051 * 4 3 2 6 6 H 1.07996 * 120.00051 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00177 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99470 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00133 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47283 * 60.00647 * 9 7 5 11 11 H 1.48510 * 109.46948 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47583 * 300.00216 * 9 7 5 13 13 S 1.65606 * 120.00134 * 94.99919 * 3 2 1 14 14 O 1.42103 * 106.40163 * 336.45777 * 13 3 2 15 15 O 1.42101 * 106.40328 * 203.54243 * 13 3 2 16 16 N 1.65602 * 107.21795 * 89.99868 * 13 3 2 17 17 C 1.46493 * 119.99990 * 65.00056 * 16 13 3 18 18 H 1.09003 * 109.25414 * 335.52683 * 17 16 13 19 19 C 1.52727 * 109.23200 * 216.06581 * 17 16 13 20 20 C 1.53320 * 108.43253 * 188.41457 * 19 17 16 21 21 C 1.52776 * 108.36095 * 69.84495 * 20 19 17 22 22 C 1.50490 * 110.55674 * 309.14219 * 21 20 19 23 23 C 1.39191 * 117.97442 * 197.59241 * 22 21 20 24 24 C 1.38411 * 118.86289 * 180.24378 * 23 22 21 25 25 C 1.38235 * 118.84552 * 0.04167 * 24 23 22 26 26 N 1.31514 * 120.61265 * 359.87473 * 25 24 23 27 27 C 1.32697 * 122.39435 * 359.93268 * 26 25 24 28 28 H 1.09001 * 109.46986 * 60.00217 * 1 2 3 29 29 H 1.09007 * 109.47703 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47385 * 299.99923 * 1 2 3 31 31 H 1.09002 * 109.46801 * 239.99590 * 2 1 3 32 32 H 1.08998 * 109.46802 * 120.00281 * 2 1 3 33 33 H 1.09000 * 109.47076 * 34.99435 * 4 3 2 34 34 H 1.08995 * 109.47796 * 155.00252 * 4 3 2 35 35 H 0.97002 * 119.99755 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99980 * 245.00349 * 16 13 3 37 37 H 1.09000 * 109.63493 * 68.74734 * 19 17 16 38 38 H 1.08999 * 109.65781 * 308.10715 * 19 17 16 39 39 H 1.08999 * 109.68937 * 310.12664 * 20 19 17 40 40 H 1.09001 * 109.68863 * 189.56047 * 20 19 17 41 41 H 1.09000 * 109.25676 * 69.42082 * 21 20 19 42 42 H 1.08997 * 109.25613 * 188.86331 * 21 20 19 43 43 H 1.08005 * 120.56796 * 0.21634 * 23 22 21 44 44 H 1.08000 * 120.57494 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.69254 * 179.85135 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 -1.2638 5 6 3.4948 1.7887 -1.8822 6 1 4.1723 1.1116 -1.3835 7 6 3.8527 2.3605 -3.0848 8 7 3.0277 3.1855 -3.6919 9 14 5.5096 1.9645 -3.8509 10 1 5.6004 0.5045 -4.1069 11 1 5.6514 2.7019 -5.1322 12 1 6.5944 2.3727 -2.9227 13 16 2.4122 2.1201 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1999 16 7 4.0144 1.8136 1.7138 17 6 5.0351 2.3522 0.8115 18 1 4.5909 2.5310 -0.1677 19 6 6.1692 1.3388 0.6727 20 6 7.3179 1.9994 -0.0986 21 6 7.9472 3.0662 0.7957 22 6 6.8895 3.9812 1.3513 23 6 7.2939 5.2085 1.8685 24 6 6.3368 6.0623 2.3889 25 6 5.0125 5.6659 2.3776 26 7 4.6670 4.4991 1.8789 27 6 5.5530 3.6540 1.3675 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.3618 1.8096 -1.9453 34 1 2.0923 3.1802 -1.0756 35 1 3.2796 3.5880 -4.5377 36 1 4.2770 1.2773 2.4782 37 1 5.8150 0.4654 0.1252 38 1 6.5164 1.0393 1.6615 39 1 6.9319 2.4625 -1.0067 40 1 8.0655 1.2496 -0.3574 41 1 8.4718 2.5814 1.6190 42 1 8.6580 3.6511 0.2119 43 1 8.3367 5.4896 1.8643 44 1 6.6198 7.0214 2.7970 45 1 4.2547 6.3204 2.7823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921836018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:48 Heat of formation + Delta-G solvation = -69.397876 kcal Electronic energy + Delta-G solvation = -29762.896909 eV Core-core repulsion = 25905.730676 eV Total energy + Delta-G solvation = -3857.166232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.51367 -38.19527 -37.94970 -37.53719 -36.63204 -35.53200 -34.65669 -32.81712 -31.51780 -31.31969 -29.26969 -28.42999 -25.03813 -24.89787 -24.12838 -23.27594 -23.15291 -20.92269 -20.17658 -18.74372 -18.54111 -18.19297 -17.66680 -17.30586 -16.94684 -16.81303 -16.15004 -15.96150 -15.33317 -15.07532 -14.83491 -14.70787 -14.58706 -14.47723 -14.00224 -13.86375 -13.74712 -13.61638 -13.50517 -13.31481 -12.98792 -12.90966 -12.77111 -12.74123 -12.62773 -12.59067 -12.27856 -12.10303 -11.97419 -11.66691 -11.55904 -11.51925 -11.50212 -10.57449 -10.50117 -10.47178 -9.97055 -9.73763 -9.61139 -8.12801 -6.25728 -0.15300 0.27162 0.49965 1.45924 1.48804 1.55341 2.15505 2.46569 2.75377 2.97462 3.18228 3.38780 3.65773 3.77436 3.93222 4.01950 4.03238 4.13963 4.17012 4.26053 4.39426 4.44940 4.48032 4.60000 4.67580 4.71902 4.78695 4.80875 4.94395 4.97193 4.99865 5.13499 5.16327 5.20307 5.26007 5.30661 5.34524 5.42166 5.44152 5.52150 5.58403 5.80177 5.91596 5.96674 6.14535 6.31257 6.84885 7.30644 7.42628 8.94767 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.007025 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.326118 B = 3984.998957 C = 5639.627227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.998 5.998 4 C 0.261 3.739 5 C -0.538 4.538 6 H 0.084 0.916 7 C 0.013 3.987 8 N -0.929 5.929 9 Si 0.941 3.059 10 H -0.263 1.263 11 H -0.298 1.298 12 H -0.237 1.237 13 S 2.794 3.206 14 O -1.019 7.019 15 O -0.988 6.988 16 N -1.100 6.100 17 C 0.183 3.817 18 H 0.112 0.888 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.168 4.168 25 C 0.067 3.933 26 N -0.492 5.492 27 C 0.088 3.912 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.017 0.983 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.169 0.831 44 H 0.166 0.834 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.392 -3.094 10.111 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.839 5.839 4 C 0.137 3.863 5 C -0.577 4.577 6 H 0.102 0.898 7 C -0.187 4.187 8 N -0.568 5.568 9 Si 0.765 3.235 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.161 1.161 13 S 2.802 3.198 14 O -1.004 7.004 15 O -0.971 6.971 16 N -0.859 5.859 17 C 0.075 3.925 18 H 0.130 0.870 19 C -0.151 4.151 20 C -0.168 4.168 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.188 4.188 25 C -0.092 4.092 26 N -0.200 5.200 27 C -0.049 4.049 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.035 0.965 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.186 0.814 44 H 0.183 0.817 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.799 -2.617 10.363 15.194 hybrid contribution 1.007 0.285 -0.731 1.276 sum 11.806 -2.332 9.632 15.414 Atomic orbital electron populations 1.22199 0.96217 1.03189 1.01115 1.21231 0.94476 0.81504 1.03225 1.57714 1.79385 1.23949 1.22839 1.18712 0.96809 0.90576 0.80221 1.21822 1.02423 1.27629 1.05789 0.89774 1.25848 1.00826 0.94533 0.97493 1.70096 1.38236 1.31071 1.17407 0.85902 0.80879 0.78818 0.77895 1.18777 1.22459 1.16076 1.01374 0.73178 0.73087 0.72191 1.93496 1.71593 1.76733 1.58534 1.93593 1.85948 1.32103 1.85409 1.55552 1.24058 1.67705 1.38538 1.20086 0.90078 0.88877 0.93460 0.87032 1.21800 0.93801 0.97237 1.02311 1.21751 0.97947 0.98910 0.98218 1.20499 0.94976 0.95518 0.99733 1.20870 0.94610 0.97670 1.00154 1.21963 1.01607 0.92258 0.95319 1.22434 0.93408 1.02027 1.00936 1.23050 0.96528 0.93007 0.96614 1.67618 1.39227 1.04567 1.08627 1.21799 0.90059 0.96445 0.96575 0.93438 0.88954 0.93834 0.89823 0.89842 0.96492 0.97065 0.92870 0.74987 0.90002 0.89140 0.93209 0.88054 0.87833 0.88901 0.81396 0.81692 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.46 10.24 71.98 0.74 -4.72 16 2 C 0.12 4.23 6.06 86.38 0.52 4.75 16 3 N -1.00 -42.59 2.82 -519.89 -1.47 -44.05 16 4 C 0.26 13.37 5.30 85.63 0.45 13.82 16 5 C -0.54 -27.10 6.91 25.60 0.18 -26.92 16 6 H 0.08 3.86 6.58 -2.91 -0.02 3.84 16 7 C 0.01 0.67 5.46 84.66 0.46 1.13 16 8 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 9 Si 0.94 39.47 29.54 68.60 2.03 41.49 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.24 -8.84 5.40 99.48 0.54 -8.30 16 13 S 2.79 119.77 5.99 -56.49 -0.34 119.43 16 14 O -1.02 -44.41 17.11 -128.00 -2.19 -46.60 16 15 O -0.99 -50.51 14.45 -128.00 -1.85 -52.36 16 16 N -1.10 -38.70 5.21 -172.87 -0.90 -39.60 16 17 C 0.18 6.55 2.52 44.17 0.11 6.66 16 18 H 0.11 4.93 4.26 -2.39 -0.01 4.92 16 19 C -0.11 -2.96 5.40 30.61 0.17 -2.80 16 20 C -0.13 -3.14 5.98 30.63 0.18 -2.96 16 21 C -0.07 -1.42 5.69 29.71 0.17 -1.25 16 22 C -0.13 -3.62 5.74 -19.85 -0.11 -3.74 16 23 C -0.09 -1.95 9.75 22.54 0.22 -1.73 16 24 C -0.17 -4.07 10.12 22.31 0.23 -3.84 16 25 C 0.07 2.20 11.19 84.74 0.95 3.15 16 26 N -0.49 -19.81 7.84 -184.00 -1.44 -21.25 16 27 C 0.09 3.19 6.36 42.29 0.27 3.46 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 32 H 0.08 2.54 7.61 -2.39 -0.02 2.53 16 33 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 34 H 0.01 0.67 6.91 -2.39 -0.02 0.65 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.42 11.90 8.84 -96.75 -0.86 11.05 16 37 H 0.08 2.13 7.85 -2.39 -0.02 2.12 16 38 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 39 H 0.05 1.53 6.39 -2.39 -0.02 1.51 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 43 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.16 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -74.66 366.67 -1.37 -76.03 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.02 Total: 35.45 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.53 Total: -14.98 kcal Atomic # 7 Polarization: -154.93 SS G_CDS: -3.53 Total: -158.46 kcal Atomic # 8 Polarization: -94.92 SS G_CDS: -4.04 Total: -98.96 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: 119.77 SS G_CDS: -0.34 Total: 119.43 kcal Total: -74.66 -1.37 -76.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921836018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds