Wall clock time and date at job start Tue Mar 31 2020 22:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40080 * 126.04197 * 2 1 4 4 C 1.30840 * 108.20818 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.89957 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.50053 * 163.77483 * 5 4 3 7 7 C 1.52997 * 117.49910 * 95.11641 * 5 4 3 8 8 C 1.39871 * 108.20209 * 359.78356 * 4 3 2 9 9 C 1.34952 * 126.03116 * 180.02562 * 2 1 3 10 10 C 1.50693 * 126.13252 * 359.94560 * 9 2 1 11 11 N 1.46505 * 109.47144 * 275.00058 * 10 9 2 12 12 S 1.65596 * 120.00115 * 164.99590 * 11 10 9 13 13 O 1.42101 * 104.28094 * 181.07235 * 12 11 10 14 14 O 1.42104 * 104.28109 * 308.93056 * 12 11 10 15 15 C 1.81401 * 104.44924 * 64.99958 * 12 11 10 16 16 C 1.53003 * 109.47194 * 173.81076 * 15 12 11 17 17 C 1.50704 * 115.54628 * 65.19862 * 16 15 12 18 18 H 1.08000 * 119.99873 * 264.78211 * 17 16 15 19 19 C 1.37877 * 119.99887 * 84.78516 * 17 16 15 20 20 N 1.31513 * 120.00130 * 352.21994 * 19 17 16 21 21 Si 1.86803 * 119.99748 * 172.22498 * 19 17 16 22 22 H 1.48501 * 109.47066 * 59.99751 * 21 19 17 23 23 H 1.48503 * 109.47164 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46818 * 299.99728 * 21 19 17 25 25 C 1.52998 * 117.50184 * 279.52712 * 16 15 12 26 26 C 1.52997 * 117.49718 * 210.86429 * 16 15 12 27 27 H 1.08999 * 109.47207 * 269.98000 * 1 2 3 28 28 H 1.09004 * 109.46583 * 29.97509 * 1 2 3 29 29 H 1.08992 * 109.47159 * 149.97132 * 1 2 3 30 30 H 1.09004 * 115.55041 * 309.44666 * 5 4 3 31 31 H 1.09003 * 117.49258 * 359.97438 * 6 5 4 32 32 H 1.08997 * 117.49993 * 145.01891 * 6 5 4 33 33 H 1.09001 * 117.49709 * 214.98154 * 7 5 4 34 34 H 1.09006 * 117.49919 * 359.97156 * 7 5 4 35 35 H 1.07996 * 126.04177 * 180.23141 * 8 4 3 36 36 H 1.09001 * 109.47224 * 155.00195 * 10 9 2 37 37 H 1.09005 * 109.47187 * 34.99699 * 10 9 2 38 38 H 0.96996 * 120.00109 * 345.00035 * 11 10 9 39 39 H 1.09001 * 109.47347 * 293.81422 * 15 12 11 40 40 H 1.08999 * 109.47165 * 53.81390 * 15 12 11 41 41 H 0.97002 * 119.99763 * 185.02532 * 20 19 17 42 42 H 1.09004 * 117.49858 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.49803 * 145.02109 * 25 16 15 44 44 H 1.09001 * 117.49623 * 214.98202 * 26 16 15 45 45 H 1.08995 * 117.50170 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 4.7498 1.6234 -0.0002 6 6 6.0903 0.9904 0.3782 7 6 5.3913 1.9428 1.3516 8 6 3.5437 -0.6667 0.0041 9 6 2.2588 -1.0913 -0.0005 10 6 1.7973 -2.5258 0.0000 11 7 1.5341 -2.9537 1.3763 12 16 0.6713 -4.3378 1.6624 13 8 0.5954 -4.4170 3.0792 14 8 -0.5011 -4.1895 0.8732 15 6 1.7167 -5.6669 1.0057 16 6 1.0949 -7.0219 1.3494 17 6 -0.2351 -7.3098 0.7017 18 1 -1.1513 -7.1036 1.2351 19 6 -0.2822 -7.8363 -0.5717 20 7 0.8209 -7.9448 -1.2796 21 14 -1.9128 -8.3953 -1.2915 22 1 -2.8510 -7.2454 -1.3437 23 1 -1.6946 -8.9183 -2.6642 24 1 -2.4890 -9.4660 -0.4390 25 6 1.3270 -7.5685 2.7594 26 6 2.0456 -8.2011 1.5650 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 4.7591 2.4058 -0.7591 31 1 6.0932 -0.0707 0.6274 32 1 6.9815 1.3566 -0.1314 33 1 5.8229 2.9352 1.4819 34 1 4.9342 1.5085 2.2408 35 1 4.4211 -1.2965 0.0084 36 1 2.5723 -3.1571 -0.4348 37 1 0.8841 -2.6139 -0.5887 38 1 1.8653 -2.4262 2.1199 39 1 1.7943 -5.5668 -0.0770 40 1 2.7103 -5.6002 1.4488 41 1 0.7784 -8.2466 -2.2005 42 1 1.9231 -6.9629 3.4421 43 1 0.5180 -8.1366 3.2185 44 1 1.7090 -9.1852 1.2387 45 1 3.1140 -8.0117 1.4615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921898438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:44 Heat of formation + Delta-G solvation = 54.991392 kcal Electronic energy + Delta-G solvation = -27493.970778 eV Core-core repulsion = 23642.198469 eV Total energy + Delta-G solvation = -3851.772309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.48004 -37.42138 -36.80546 -36.37127 -35.39991 -35.08173 -32.95689 -32.08918 -30.45389 -28.23396 -26.98264 -25.79706 -25.49101 -23.34226 -22.61568 -21.25384 -20.27232 -19.81511 -19.44130 -18.75863 -17.40324 -16.75145 -16.39877 -15.93403 -15.82064 -15.23990 -15.17717 -14.75013 -14.57947 -14.32605 -14.30321 -13.81503 -13.68450 -13.18775 -12.85277 -12.73297 -12.51971 -12.10853 -12.00264 -11.87259 -11.72885 -11.41751 -11.37512 -11.26562 -11.08819 -11.06419 -10.94711 -10.83196 -10.65367 -10.50985 -10.41088 -10.17831 -9.80427 -9.40078 -9.20078 -9.00994 -8.62392 -8.60665 -8.14742 -6.18564 -4.29452 0.91342 1.70130 2.35154 2.53646 3.29120 3.31411 3.37596 3.43203 3.61611 4.17129 4.30783 4.33182 4.46292 4.64125 4.71655 4.77764 4.86505 5.01370 5.08806 5.09269 5.15880 5.19191 5.27627 5.38372 5.41071 5.46914 5.56349 5.58476 5.66325 5.87284 5.88224 5.89267 5.95315 6.06698 6.21015 6.32301 6.50748 6.55939 6.68441 6.86085 6.94015 7.08405 7.19826 7.35377 7.61898 7.75771 8.15558 8.75992 9.41977 10.88948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.003018 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.810490 B = 9275.999342 C = 9718.701870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.361 5.361 3 N -0.287 5.287 4 C 0.099 3.901 5 C -0.078 4.078 6 C -0.165 4.165 7 C -0.166 4.166 8 C -0.251 4.251 9 C 0.081 3.919 10 C 0.180 3.820 11 N -1.131 6.131 12 S 2.605 3.395 13 O -0.970 6.970 14 O -0.949 6.949 15 C -0.552 4.552 16 C 0.043 3.957 17 C -0.518 4.518 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.208 4.208 26 C -0.140 4.140 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.412 0.588 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 15.474 1.031 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.143 5.143 3 N -0.110 5.110 4 C -0.067 4.067 5 C -0.098 4.098 6 C -0.203 4.203 7 C -0.204 4.204 8 C -0.282 4.282 9 C -0.048 4.048 10 C 0.052 3.948 11 N -0.887 5.887 12 S 2.703 3.297 13 O -0.961 6.961 14 O -0.939 6.939 15 C -0.686 4.686 16 C 0.041 3.959 17 C -0.555 4.555 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.509 5.509 21 Si 0.717 3.283 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.245 0.755 39 H 0.153 0.847 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.721 16.241 1.102 17.612 hybrid contribution 0.449 -0.965 -0.595 1.219 sum 7.169 15.276 0.507 16.883 Atomic orbital electron populations 1.21988 0.73815 1.04900 1.03975 1.48471 1.06659 1.03060 1.56111 1.77288 1.01110 1.07571 1.25013 1.21295 0.92142 0.93023 1.00199 1.20106 0.89057 1.00411 1.00269 1.23028 0.94562 0.99700 1.02968 1.22996 1.03226 1.00823 0.93362 1.21120 0.96244 0.94253 1.16556 1.21004 0.91134 0.90151 1.02489 1.19764 1.02442 0.88404 0.84204 1.56111 1.76429 1.44174 1.12026 1.05261 0.75659 0.74319 0.74498 1.93518 1.86592 1.86172 1.29792 1.93533 1.44268 1.84492 1.71613 1.29972 1.11400 1.14380 1.12842 1.18268 0.96224 0.87835 0.93608 1.20490 0.89949 1.44283 1.00794 0.91399 1.24944 0.96547 0.94000 0.96726 1.69961 1.26980 1.45191 1.08791 0.86662 0.84055 0.79553 0.78027 1.19476 1.21105 1.19877 1.23207 1.03724 1.05943 0.91703 1.22558 0.95615 0.99004 1.00795 0.90402 0.89185 0.88623 0.86407 0.88081 0.88132 0.88308 0.88599 0.83250 0.88823 0.88857 0.75523 0.84745 0.88021 0.92624 0.90652 0.89511 0.89563 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.27 59.85 0.67 1.67 16 2 N -0.36 -4.70 4.01 -63.88 -0.26 -4.96 16 3 N -0.29 -4.00 12.58 33.67 0.42 -3.58 16 4 C 0.10 1.22 6.85 -82.40 -0.56 0.65 16 5 C -0.08 -0.74 6.33 -91.77 -0.58 -1.32 16 6 C -0.17 -1.22 10.02 -26.70 -0.27 -1.49 16 7 C -0.17 -1.33 10.24 -26.70 -0.27 -1.60 16 8 C -0.25 -3.00 10.03 -40.01 -0.40 -3.40 16 9 C 0.08 1.03 6.33 -82.26 -0.52 0.51 16 10 C 0.18 2.27 6.30 -5.19 -0.03 2.24 16 11 N -1.13 -15.83 5.88 -11.65 -0.07 -15.90 16 12 S 2.61 49.35 5.19 -107.50 -0.56 48.79 16 13 O -0.97 -20.50 18.08 -57.54 -1.04 -21.54 16 14 O -0.95 -21.04 17.17 -57.54 -0.99 -22.02 16 15 C -0.55 -10.89 5.93 37.16 0.22 -10.67 16 16 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 17 C -0.52 -13.74 8.18 -34.44 -0.28 -14.03 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 20 N -0.87 -23.24 12.98 55.43 0.72 -22.53 16 21 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 26 C -0.14 -3.10 9.49 -26.69 -0.25 -3.36 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.95 7.15 -51.93 -0.37 0.58 16 30 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 0.75 7.14 -51.93 -0.37 0.38 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.15 1.48 7.38 -52.49 -0.39 1.10 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.20 6.79 -51.93 -0.35 0.85 16 38 H 0.41 5.19 8.61 -34.46 -0.30 4.89 16 39 H 0.13 2.70 8.14 -51.92 -0.42 2.28 16 40 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 41 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 44 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -33.28 393.40 -10.53 -43.80 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.82 Total: 8.84 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: -2.85 Total: -32.61 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.82 Total: -46.97 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.03 Total: -43.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.56 Total: 48.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.28 -10.53 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921898438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.796 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds