Wall clock time and date at job start Tue Mar 31 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40080 * 126.04197 * 2 1 4 4 C 1.30840 * 108.20818 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.89957 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.50053 * 163.77483 * 5 4 3 7 7 C 1.52997 * 117.49910 * 95.11641 * 5 4 3 8 8 C 1.39871 * 108.20209 * 359.78356 * 4 3 2 9 9 C 1.34952 * 126.03116 * 180.02562 * 2 1 3 10 10 C 1.50693 * 126.13252 * 359.94560 * 9 2 1 11 11 N 1.46505 * 109.47144 * 275.00058 * 10 9 2 12 12 S 1.65596 * 120.00115 * 164.99590 * 11 10 9 13 13 O 1.42101 * 104.28094 * 181.07235 * 12 11 10 14 14 O 1.42104 * 104.28109 * 308.93056 * 12 11 10 15 15 C 1.81401 * 104.44924 * 64.99958 * 12 11 10 16 16 C 1.53003 * 109.47194 * 173.81076 * 15 12 11 17 17 C 1.50704 * 115.54628 * 65.19862 * 16 15 12 18 18 H 1.08000 * 119.99873 * 264.78211 * 17 16 15 19 19 C 1.37877 * 119.99887 * 84.78516 * 17 16 15 20 20 N 1.31513 * 120.00130 * 352.21994 * 19 17 16 21 21 Si 1.86803 * 119.99748 * 172.22498 * 19 17 16 22 22 H 1.48501 * 109.47066 * 59.99751 * 21 19 17 23 23 H 1.48503 * 109.47164 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46818 * 299.99728 * 21 19 17 25 25 C 1.52998 * 117.50184 * 279.52712 * 16 15 12 26 26 C 1.52997 * 117.49718 * 210.86429 * 16 15 12 27 27 H 1.08999 * 109.47207 * 269.98000 * 1 2 3 28 28 H 1.09004 * 109.46583 * 29.97509 * 1 2 3 29 29 H 1.08992 * 109.47159 * 149.97132 * 1 2 3 30 30 H 1.09004 * 115.55041 * 309.44666 * 5 4 3 31 31 H 1.09003 * 117.49258 * 359.97438 * 6 5 4 32 32 H 1.08997 * 117.49993 * 145.01891 * 6 5 4 33 33 H 1.09001 * 117.49709 * 214.98154 * 7 5 4 34 34 H 1.09006 * 117.49919 * 359.97156 * 7 5 4 35 35 H 1.07996 * 126.04177 * 180.23141 * 8 4 3 36 36 H 1.09001 * 109.47224 * 155.00195 * 10 9 2 37 37 H 1.09005 * 109.47187 * 34.99699 * 10 9 2 38 38 H 0.96996 * 120.00109 * 345.00035 * 11 10 9 39 39 H 1.09001 * 109.47347 * 293.81422 * 15 12 11 40 40 H 1.08999 * 109.47165 * 53.81390 * 15 12 11 41 41 H 0.97002 * 119.99763 * 185.02532 * 20 19 17 42 42 H 1.09004 * 117.49858 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.49803 * 145.02109 * 25 16 15 44 44 H 1.09001 * 117.49623 * 214.98202 * 26 16 15 45 45 H 1.08995 * 117.50170 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 4.7498 1.6234 -0.0002 6 6 6.0903 0.9904 0.3782 7 6 5.3913 1.9428 1.3516 8 6 3.5437 -0.6667 0.0041 9 6 2.2588 -1.0913 -0.0005 10 6 1.7973 -2.5258 0.0000 11 7 1.5341 -2.9537 1.3763 12 16 0.6713 -4.3378 1.6624 13 8 0.5954 -4.4170 3.0792 14 8 -0.5011 -4.1895 0.8732 15 6 1.7167 -5.6669 1.0057 16 6 1.0949 -7.0219 1.3494 17 6 -0.2351 -7.3098 0.7017 18 1 -1.1513 -7.1036 1.2351 19 6 -0.2822 -7.8363 -0.5717 20 7 0.8209 -7.9448 -1.2796 21 14 -1.9128 -8.3953 -1.2915 22 1 -2.8510 -7.2454 -1.3437 23 1 -1.6946 -8.9183 -2.6642 24 1 -2.4890 -9.4660 -0.4390 25 6 1.3270 -7.5685 2.7594 26 6 2.0456 -8.2011 1.5650 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 4.7591 2.4058 -0.7591 31 1 6.0932 -0.0707 0.6274 32 1 6.9815 1.3566 -0.1314 33 1 5.8229 2.9352 1.4819 34 1 4.9342 1.5085 2.2408 35 1 4.4211 -1.2965 0.0084 36 1 2.5723 -3.1571 -0.4348 37 1 0.8841 -2.6139 -0.5887 38 1 1.8653 -2.4262 2.1199 39 1 1.7943 -5.5668 -0.0770 40 1 2.7103 -5.6002 1.4488 41 1 0.7784 -8.2466 -2.2005 42 1 1.9231 -6.9629 3.4421 43 1 0.5180 -8.1366 3.2185 44 1 1.7090 -9.1852 1.2387 45 1 3.1140 -8.0117 1.4615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921898438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:43 Heat of formation + Delta-G solvation = 32.914870 kcal Electronic energy + Delta-G solvation = -27494.928087 eV Core-core repulsion = 23642.198469 eV Total energy + Delta-G solvation = -3852.729619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39816 -38.54769 -38.12828 -37.95071 -36.84697 -36.37186 -34.06576 -33.82665 -31.47074 -29.83737 -27.82107 -27.47102 -26.81951 -24.11704 -23.20126 -22.96962 -21.56146 -21.13518 -20.42608 -20.17735 -18.64536 -18.34824 -17.82099 -16.97211 -16.81469 -16.68013 -16.64515 -16.23945 -15.77035 -15.43360 -15.33865 -15.18854 -14.89034 -14.64420 -13.82045 -13.71317 -13.65760 -13.61730 -13.37160 -13.12452 -13.08363 -12.91950 -12.89241 -12.83421 -12.57995 -12.43099 -12.28427 -12.20115 -11.91153 -11.89435 -11.55045 -11.50346 -11.14814 -10.86242 -10.63972 -10.52294 -10.13881 -9.86770 -9.53248 -8.17699 -6.32064 -0.57636 0.71927 1.41399 1.42357 1.47936 1.49528 1.62510 2.11543 2.41018 2.91740 2.96549 3.09488 3.29108 3.40219 3.46037 3.50368 3.89326 3.97967 4.02230 4.07898 4.17024 4.27830 4.31214 4.36314 4.42521 4.52761 4.59298 4.62020 4.66153 4.69489 4.75777 4.85163 4.88025 5.00340 5.04477 5.13324 5.24231 5.26557 5.33522 5.48823 5.61273 5.64080 5.73560 5.95712 5.99357 6.24730 6.69306 6.73715 7.40213 8.88885 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.003018 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.810490 B = 9275.999342 C = 9718.701870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.370 5.370 3 N -0.317 5.317 4 C 0.093 3.907 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.164 4.164 8 C -0.252 4.252 9 C 0.073 3.927 10 C 0.176 3.824 11 N -1.112 6.112 12 S 2.626 3.374 13 O -0.994 6.994 14 O -0.987 6.987 15 C -0.551 4.551 16 C 0.012 3.988 17 C -0.537 4.537 18 H 0.048 0.952 19 C 0.046 3.954 20 N -0.889 5.889 21 Si 0.932 3.068 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.271 1.271 25 C -0.199 4.199 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.170 0.830 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.421 0.579 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.266 0.734 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 16.173 1.018 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.153 5.153 3 N -0.140 5.140 4 C -0.072 4.072 5 C -0.118 4.118 6 C -0.187 4.187 7 C -0.202 4.202 8 C -0.282 4.282 9 C -0.056 4.056 10 C 0.049 3.951 11 N -0.873 5.873 12 S 2.723 3.277 13 O -0.984 6.984 14 O -0.977 6.977 15 C -0.684 4.684 16 C 0.010 3.990 17 C -0.574 4.574 18 H 0.066 0.934 19 C -0.157 4.157 20 N -0.525 5.525 21 Si 0.757 3.243 22 H -0.201 1.201 23 H -0.200 1.200 24 H -0.196 1.196 25 C -0.236 4.236 26 C -0.177 4.177 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.188 0.812 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.257 0.743 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.590 16.933 1.100 19.019 hybrid contribution -0.112 -1.128 -0.567 1.267 sum 8.478 15.805 0.534 17.943 Atomic orbital electron populations 1.22147 0.73080 1.05713 1.04408 1.48680 1.07306 1.03025 1.56267 1.77249 1.02065 1.08417 1.26254 1.21801 0.92474 0.93763 0.99116 1.20246 0.89051 1.01040 1.01501 1.23137 0.94022 0.99688 1.01862 1.23049 1.02919 1.01940 0.92307 1.21429 0.96628 0.94436 1.15737 1.21054 0.91558 0.89902 1.03133 1.19953 1.03097 0.89036 0.83060 1.55569 1.75859 1.42593 1.13238 1.04375 0.75236 0.74717 0.73370 1.93477 1.87041 1.86829 1.31086 1.93486 1.46651 1.85271 1.72302 1.29868 1.13085 1.12585 1.12865 1.18397 0.95691 0.89941 0.94954 1.20678 0.90957 1.44617 1.01186 0.93370 1.25459 0.98876 0.94245 0.97117 1.69997 1.27827 1.45693 1.08936 0.86019 0.81335 0.78961 0.77979 1.20121 1.19967 1.19621 1.23255 1.03546 1.05481 0.91363 1.22521 0.96626 0.97596 1.00982 0.90149 0.87849 0.88426 0.85883 0.87995 0.86136 0.86659 0.89724 0.81248 0.86493 0.89399 0.74335 0.85199 0.84420 0.92486 0.88267 0.90136 0.91665 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 11.27 127.77 1.44 3.25 16 2 N -0.37 -9.41 4.01 -356.03 -1.43 -10.84 16 3 N -0.32 -8.64 12.58 -47.38 -0.60 -9.24 16 4 C 0.09 2.19 6.85 43.10 0.30 2.48 16 5 C -0.10 -1.69 6.33 -11.54 -0.07 -1.76 16 6 C -0.15 -1.82 10.02 30.62 0.31 -1.51 16 7 C -0.16 -2.30 10.24 30.62 0.31 -1.99 16 8 C -0.25 -5.56 10.03 21.99 0.22 -5.34 16 9 C 0.07 1.74 6.33 41.40 0.26 2.00 16 10 C 0.18 4.17 6.30 85.63 0.54 4.71 16 11 N -1.11 -29.40 5.88 -190.78 -1.12 -30.52 16 12 S 2.63 97.09 5.19 -56.49 -0.29 96.79 16 13 O -0.99 -41.00 18.08 -127.65 -2.31 -43.31 16 14 O -0.99 -43.99 17.17 -127.65 -2.19 -46.18 16 15 C -0.55 -20.77 5.93 71.98 0.43 -20.34 16 16 C 0.01 0.57 1.32 -52.93 -0.07 0.50 16 17 C -0.54 -28.70 8.18 25.60 0.21 -28.49 16 18 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 19 C 0.05 2.46 5.38 84.65 0.46 2.91 16 20 N -0.89 -46.93 12.98 21.45 0.28 -46.65 16 21 Si 0.93 42.65 29.55 68.60 2.03 44.68 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.20 -8.24 9.96 30.62 0.30 -7.94 16 26 C -0.14 -5.92 9.49 30.62 0.29 -5.63 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.10 1.95 7.15 -2.39 -0.02 1.93 16 30 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.10 1.23 7.14 -2.39 -0.02 1.21 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.17 2.89 7.38 -2.91 -0.02 2.87 16 36 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.21 6.79 -2.38 -0.02 2.19 16 38 H 0.42 9.86 8.61 -96.75 -0.83 9.03 16 39 H 0.13 5.04 8.14 -2.39 -0.02 5.02 16 40 H 0.14 4.08 8.09 -2.39 -0.02 4.06 16 41 H 0.27 13.41 8.32 -92.71 -0.77 12.64 16 42 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -70.78 393.40 -0.54 -71.32 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.17 Total: 31.07 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 4.92 Total: -57.13 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -2.87 Total: -97.25 kcal Atomic # 8 Polarization: -84.99 SS G_CDS: -4.50 Total: -89.49 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 97.09 SS G_CDS: -0.29 Total: 96.79 kcal Total: -70.78 -0.54 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921898438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.235 kcal (2) G-P(sol) polarization free energy of solvation -70.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds