Wall clock time and date at job start Tue Mar 31 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35962 * 117.00207 * 2 1 4 4 C 1.37574 * 120.82842 * 180.27187 * 3 2 1 5 5 C 1.38032 * 114.24855 * 180.24465 * 4 3 2 6 6 C 1.47126 * 127.75893 * 179.80398 * 5 4 3 7 7 O 1.21628 * 119.99755 * 7.23923 * 6 5 4 8 8 N 1.34777 * 120.00015 * 187.24652 * 6 5 4 9 9 C 1.46494 * 120.00021 * 5.48130 * 8 6 5 10 10 C 1.46498 * 119.99470 * 185.48816 * 8 6 5 11 11 H 1.08997 * 108.45433 * 2.30977 * 10 8 6 12 12 C 1.52566 * 108.51209 * 244.75885 * 10 8 6 13 13 C 1.50884 * 109.36086 * 153.73577 * 12 10 8 14 14 C 1.54301 * 110.23279 * 91.80122 * 13 12 10 15 15 N 1.47606 * 111.94250 * 319.70289 * 14 13 12 16 16 C 1.36936 * 118.64300 * 137.77813 * 15 14 13 17 17 H 1.07995 * 120.00047 * 209.55288 * 16 15 14 18 18 C 1.38817 * 119.99791 * 29.55497 * 16 15 14 19 19 N 1.31617 * 119.99957 * 9.82021 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 189.82556 * 18 16 15 21 21 H 1.48500 * 109.47233 * 60.00049 * 20 18 16 22 22 H 1.48503 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47177 * 299.99873 * 20 18 16 24 24 C 1.44573 * 122.71249 * 317.49914 * 15 14 13 25 25 C 1.47098 * 108.50950 * 120.00036 * 10 8 6 26 26 S 1.77232 * 104.48525 * 359.53882 * 5 4 3 27 27 N 1.30360 * 120.82560 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47656 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47170 * 299.99808 * 1 2 3 30 30 H 1.09001 * 109.47171 * 59.99326 * 1 2 3 31 31 H 1.08000 * 122.87391 * 0.08131 * 4 3 2 32 32 H 1.08997 * 109.47436 * 275.45415 * 9 8 6 33 33 H 1.09004 * 109.47208 * 35.45258 * 9 8 6 34 34 H 1.09001 * 109.47078 * 155.44802 * 9 8 6 35 35 H 1.08998 * 109.49417 * 273.70776 * 12 10 8 36 36 H 1.09009 * 109.48825 * 33.74822 * 12 10 8 37 37 H 1.09002 * 109.36690 * 212.08360 * 13 12 10 38 38 H 1.08998 * 109.36264 * 331.82792 * 13 12 10 39 39 H 1.08999 * 109.13463 * 199.01843 * 14 13 12 40 40 H 1.09001 * 108.95587 * 80.26784 * 14 13 12 41 41 H 0.97003 * 119.99590 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.45007 * 211.02937 * 24 15 14 43 43 H 1.09008 * 109.45222 * 330.97136 * 24 15 14 44 44 H 1.08992 * 109.33095 * 63.79254 * 25 10 8 45 45 H 1.08998 * 109.32741 * 304.30872 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3032 -0.0056 5 6 3.9006 2.5968 0.0005 6 6 5.3050 3.0352 0.0010 7 8 6.1966 2.2196 -0.1372 8 7 5.6034 4.3404 0.1546 9 6 4.5398 5.3063 0.4409 10 6 6.9915 4.7933 0.0352 11 1 7.6138 3.9352 -0.2185 12 6 7.4434 5.3324 1.3890 13 6 8.9419 5.1996 1.5053 14 6 9.6318 6.4879 1.0099 15 7 8.9793 7.0341 -0.1962 16 6 8.7861 8.3870 -0.2823 17 1 7.9507 8.7786 -0.8436 18 6 9.6641 9.2552 0.3520 19 7 10.7836 8.7966 0.8704 20 14 9.2567 11.0744 0.4699 21 1 7.9816 11.2491 1.2107 22 1 10.3478 11.7805 1.1883 23 1 9.1171 11.6400 -0.8961 24 6 8.5411 6.2003 -1.2929 25 6 7.0715 5.7690 -1.0628 26 16 2.4472 3.6110 -0.0002 27 7 1.3521 2.3148 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0643 0.4373 -0.0115 32 1 4.0753 5.6227 -0.4929 33 1 3.7896 4.8415 1.0807 34 1 4.9632 6.1732 0.9482 35 1 7.1636 6.3823 1.4742 36 1 6.9646 4.7626 2.1855 37 1 9.2094 5.0241 2.5473 38 1 9.2784 4.3586 0.8991 39 1 10.6745 6.2689 0.7798 40 1 9.5952 7.2361 1.8017 41 1 11.3969 9.4032 1.3140 42 1 8.6133 6.7597 -2.2256 43 1 9.1740 5.3147 -1.3511 44 1 6.4737 6.6450 -0.8113 45 1 6.6807 5.3184 -1.9750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948385741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:06 Heat of formation + Delta-G solvation = 12.055322 kcal Electronic energy + Delta-G solvation = -27707.686421 eV Core-core repulsion = 23854.052264 eV Total energy + Delta-G solvation = -3853.634157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55779 -40.11800 -37.86350 -36.63709 -35.50770 -33.14751 -31.75449 -31.48163 -30.25250 -28.35751 -27.19855 -26.28171 -25.21593 -23.96557 -23.18780 -21.70011 -19.84877 -19.32783 -19.19875 -18.65262 -17.90537 -16.82722 -16.57376 -16.36585 -16.10786 -15.52312 -15.15740 -14.90087 -14.50897 -14.00537 -13.85940 -13.66275 -13.50735 -13.37207 -13.24208 -12.92504 -12.62600 -12.42575 -12.31235 -12.02990 -11.70844 -11.43497 -11.40083 -11.22237 -10.86603 -10.84759 -10.66289 -10.54380 -10.32845 -10.20296 -9.99027 -9.95825 -9.78444 -9.73127 -9.62981 -8.76565 -8.53763 -8.42658 -6.64210 -5.79169 -3.28233 -0.10218 0.89082 1.31281 1.97535 2.54889 2.91273 3.07427 3.35275 3.41454 3.41681 4.16709 4.46952 4.57377 4.80375 4.88419 4.89336 4.97445 5.13818 5.19701 5.21260 5.35269 5.41002 5.47708 5.54785 5.57756 5.70862 5.83680 5.97761 5.98526 6.09304 6.28660 6.40937 6.50737 6.60012 6.67530 6.72191 6.76055 6.82084 6.86514 6.92438 7.28797 7.45487 7.73146 7.81058 7.94328 8.47687 9.23628 9.88587 10.35180 11.27484 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002571 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.294608 B =10888.937420 C =11506.188491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.305 3.695 4 C -0.132 4.132 5 C -0.178 4.178 6 C 0.586 3.414 7 O -0.518 6.518 8 N -0.597 5.597 9 C 0.059 3.941 10 C 0.157 3.843 11 H 0.092 0.908 12 C -0.110 4.110 13 C -0.142 4.142 14 C 0.178 3.822 15 N -0.590 5.590 16 C -0.260 4.260 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.163 3.837 25 C -0.156 4.156 26 S 0.306 5.694 27 N -0.535 5.535 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.177 0.823 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.963 -12.888 -0.132 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.092 3.908 4 C -0.169 4.169 5 C -0.310 4.310 6 C 0.371 3.629 7 O -0.395 6.395 8 N -0.329 5.329 9 C -0.087 4.087 10 C 0.056 3.944 11 H 0.110 0.890 12 C -0.148 4.148 13 C -0.181 4.181 14 C 0.054 3.946 15 N -0.311 5.311 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.034 3.966 25 C -0.197 4.197 26 S 0.456 5.544 27 N -0.375 5.375 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.194 0.806 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.707 -11.916 -0.114 22.180 hybrid contribution 0.315 -0.361 0.129 0.496 sum -18.392 -12.277 0.014 22.113 Atomic orbital electron populations 1.22959 0.76765 1.03523 1.02531 1.86298 1.22954 1.22878 1.88265 1.19869 0.89700 0.85281 0.95975 1.20746 0.92427 0.98608 1.05153 1.26129 0.99500 0.97601 1.07764 1.16749 0.85168 0.82959 0.77991 1.90838 1.46757 1.52169 1.49772 1.48220 1.10029 1.05814 1.68822 1.22040 0.90280 0.94582 1.01765 1.20337 0.78757 0.98563 0.96712 0.89031 1.21285 0.97085 1.02060 0.94377 1.22055 0.94748 1.01045 1.00300 1.21123 0.92930 0.91231 0.89355 1.43656 1.69895 1.03049 1.14499 1.19127 1.06640 0.81898 1.31320 0.91898 1.25148 0.95021 0.97921 1.01105 1.70017 1.09720 1.34087 1.41051 0.86384 0.77268 0.85319 0.77789 1.21056 1.21688 1.20922 1.20564 0.90238 0.94112 0.91718 1.21909 1.03041 0.98464 0.96274 1.85369 0.89222 1.10827 1.68933 1.76330 1.28759 1.02189 1.30248 0.88054 0.92157 0.92172 0.80606 0.91406 0.91266 0.88170 0.90254 0.93306 0.92608 0.93378 0.95592 0.90639 0.93578 0.93063 0.94685 0.91496 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.43 101.05 1.05 1.32 16 2 O -0.30 -3.08 10.51 -19.62 -0.21 -3.29 16 3 C 0.31 3.49 7.36 -18.42 -0.14 3.35 16 4 C -0.13 -1.53 10.10 -39.90 -0.40 -1.93 16 5 C -0.18 -2.17 6.39 -36.05 -0.23 -2.40 16 6 C 0.59 8.54 7.65 -12.65 -0.10 8.45 16 7 O -0.52 -9.16 16.27 5.25 0.09 -9.08 16 8 N -0.60 -8.20 2.59 -178.87 -0.46 -8.66 16 9 C 0.06 0.63 7.86 59.84 0.47 1.10 16 10 C 0.16 2.50 1.94 -70.99 -0.14 2.36 16 11 H 0.09 1.62 6.05 -51.93 -0.31 1.31 16 12 C -0.11 -1.83 4.38 -28.02 -0.12 -1.95 16 13 C -0.14 -2.60 5.71 -27.11 -0.15 -2.75 16 14 C 0.18 4.06 4.67 -2.76 -0.01 4.04 16 15 N -0.59 -13.68 2.26 -171.87 -0.39 -14.07 16 16 C -0.26 -6.65 9.43 -15.06 -0.14 -6.80 16 17 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 18 C 0.01 0.18 5.00 -17.43 -0.09 0.09 16 19 N -0.90 -25.26 10.87 55.49 0.60 -24.66 16 20 Si 0.90 20.89 29.56 -169.99 -5.03 15.87 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.16 3.21 5.65 -4.09 -0.02 3.19 16 25 C -0.16 -2.56 4.88 -28.58 -0.14 -2.70 16 26 S 0.31 3.13 19.25 -107.50 -2.07 1.06 16 27 N -0.54 -6.18 11.03 29.19 0.32 -5.86 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 33 H 0.07 0.64 5.17 -30.62 -0.16 0.48 16 34 H 0.10 1.08 7.21 -51.93 -0.37 0.71 16 35 H 0.08 1.45 7.21 -51.93 -0.37 1.08 16 36 H 0.05 0.76 8.05 -51.92 -0.42 0.34 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 39 H 0.03 0.65 8.00 -51.93 -0.42 0.23 16 40 H 0.08 1.92 6.39 -51.93 -0.33 1.58 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 43 H 0.03 0.68 8.06 -51.92 -0.42 0.26 16 44 H 0.07 1.13 7.58 -51.93 -0.39 0.74 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -29.95 366.68 -8.25 -38.20 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.47 Total: -0.41 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.16 Total: 5.37 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.07 Total: -53.25 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.12 Total: -12.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.07 Total: 1.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.95 -8.25 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948385741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.254 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds