Wall clock time and date at job start Tue Mar 31 2020 23:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35962 * 117.00207 * 2 1 4 4 C 1.37574 * 120.82842 * 180.27187 * 3 2 1 5 5 C 1.38032 * 114.24855 * 180.24465 * 4 3 2 6 6 C 1.47126 * 127.75893 * 179.80398 * 5 4 3 7 7 O 1.21628 * 119.99755 * 7.23923 * 6 5 4 8 8 N 1.34777 * 120.00015 * 187.24652 * 6 5 4 9 9 C 1.46494 * 120.00021 * 5.48130 * 8 6 5 10 10 C 1.46498 * 119.99470 * 185.48816 * 8 6 5 11 11 H 1.08997 * 108.45433 * 2.30977 * 10 8 6 12 12 C 1.52566 * 108.51209 * 244.75885 * 10 8 6 13 13 C 1.50884 * 109.36086 * 153.73577 * 12 10 8 14 14 C 1.54301 * 110.23279 * 91.80122 * 13 12 10 15 15 N 1.47606 * 111.94250 * 319.70289 * 14 13 12 16 16 C 1.36936 * 118.64300 * 137.77813 * 15 14 13 17 17 H 1.07995 * 120.00047 * 209.55288 * 16 15 14 18 18 C 1.38817 * 119.99791 * 29.55497 * 16 15 14 19 19 N 1.31617 * 119.99957 * 9.82021 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 189.82556 * 18 16 15 21 21 H 1.48500 * 109.47233 * 60.00049 * 20 18 16 22 22 H 1.48503 * 109.47090 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47177 * 299.99873 * 20 18 16 24 24 C 1.44573 * 122.71249 * 317.49914 * 15 14 13 25 25 C 1.47098 * 108.50950 * 120.00036 * 10 8 6 26 26 S 1.77232 * 104.48525 * 359.53882 * 5 4 3 27 27 N 1.30360 * 120.82560 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47656 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47170 * 299.99808 * 1 2 3 30 30 H 1.09001 * 109.47171 * 59.99326 * 1 2 3 31 31 H 1.08000 * 122.87391 * 0.08131 * 4 3 2 32 32 H 1.08997 * 109.47436 * 275.45415 * 9 8 6 33 33 H 1.09004 * 109.47208 * 35.45258 * 9 8 6 34 34 H 1.09001 * 109.47078 * 155.44802 * 9 8 6 35 35 H 1.08998 * 109.49417 * 273.70776 * 12 10 8 36 36 H 1.09009 * 109.48825 * 33.74822 * 12 10 8 37 37 H 1.09002 * 109.36690 * 212.08360 * 13 12 10 38 38 H 1.08998 * 109.36264 * 331.82792 * 13 12 10 39 39 H 1.08999 * 109.13463 * 199.01843 * 14 13 12 40 40 H 1.09001 * 108.95587 * 80.26784 * 14 13 12 41 41 H 0.97003 * 119.99590 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.45007 * 211.02937 * 24 15 14 43 43 H 1.09008 * 109.45222 * 330.97136 * 24 15 14 44 44 H 1.08992 * 109.33095 * 63.79254 * 25 10 8 45 45 H 1.08998 * 109.32741 * 304.30872 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3032 -0.0056 5 6 3.9006 2.5968 0.0005 6 6 5.3050 3.0352 0.0010 7 8 6.1966 2.2196 -0.1372 8 7 5.6034 4.3404 0.1546 9 6 4.5398 5.3063 0.4409 10 6 6.9915 4.7933 0.0352 11 1 7.6138 3.9352 -0.2185 12 6 7.4434 5.3324 1.3890 13 6 8.9419 5.1996 1.5053 14 6 9.6318 6.4879 1.0099 15 7 8.9793 7.0341 -0.1962 16 6 8.7861 8.3870 -0.2823 17 1 7.9507 8.7786 -0.8436 18 6 9.6641 9.2552 0.3520 19 7 10.7836 8.7966 0.8704 20 14 9.2567 11.0744 0.4699 21 1 7.9816 11.2491 1.2107 22 1 10.3478 11.7805 1.1883 23 1 9.1171 11.6400 -0.8961 24 6 8.5411 6.2003 -1.2929 25 6 7.0715 5.7690 -1.0628 26 16 2.4472 3.6110 -0.0002 27 7 1.3521 2.3148 -0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0643 0.4373 -0.0115 32 1 4.0753 5.6227 -0.4929 33 1 3.7896 4.8415 1.0807 34 1 4.9632 6.1732 0.9482 35 1 7.1636 6.3823 1.4742 36 1 6.9646 4.7626 2.1855 37 1 9.2094 5.0241 2.5473 38 1 9.2784 4.3586 0.8991 39 1 10.6745 6.2689 0.7798 40 1 9.5952 7.2361 1.8017 41 1 11.3969 9.4032 1.3140 42 1 8.6133 6.7597 -2.2256 43 1 9.1740 5.3147 -1.3511 44 1 6.4737 6.6450 -0.8113 45 1 6.6807 5.3184 -1.9750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948385741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:05 Heat of formation + Delta-G solvation = -6.994706 kcal Electronic energy + Delta-G solvation = -27708.512492 eV Core-core repulsion = 23854.052264 eV Total energy + Delta-G solvation = -3854.460228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59244 -41.07020 -39.27401 -37.51991 -36.88710 -34.71074 -33.28862 -32.76402 -31.70286 -29.05123 -28.26476 -27.81937 -26.45144 -25.48920 -24.66040 -22.73039 -21.14122 -20.93332 -20.30149 -19.64234 -18.72024 -18.53467 -17.59520 -17.31432 -17.23221 -16.86371 -16.58510 -15.87258 -15.67003 -15.59965 -15.25016 -15.06030 -14.56356 -14.52704 -14.28428 -14.22002 -14.03171 -13.64023 -13.36816 -13.12556 -12.97495 -12.97198 -12.66320 -12.52710 -12.36929 -12.13564 -12.07489 -11.93967 -11.78778 -11.69935 -11.52376 -11.38845 -11.33472 -11.12804 -10.88435 -10.40952 -9.85067 -9.38871 -8.56115 -7.78705 -5.29909 -1.02129 0.02609 0.47764 1.07827 1.52003 1.52293 1.56663 1.59087 1.85638 2.22921 2.56225 3.21647 3.36554 3.66070 3.73182 3.84389 4.00909 4.10351 4.11084 4.31277 4.32864 4.36010 4.43201 4.47026 4.48379 4.54463 4.66493 4.72007 4.74300 4.81242 4.96905 5.03306 5.04013 5.16487 5.18435 5.25712 5.32640 5.47484 5.49431 5.62668 5.74306 5.87996 5.96757 6.16803 6.48863 6.83109 7.25645 7.99799 8.41237 9.25898 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002571 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.294608 B =10888.937420 C =11506.188491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.301 3.699 4 C -0.130 4.130 5 C -0.195 4.195 6 C 0.588 3.412 7 O -0.556 6.556 8 N -0.595 5.595 9 C 0.052 3.948 10 C 0.164 3.836 11 H 0.076 0.924 12 C -0.099 4.099 13 C -0.130 4.130 14 C 0.191 3.809 15 N -0.602 5.602 16 C -0.258 4.258 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.938 5.938 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.278 1.278 24 C 0.158 3.842 25 C -0.137 4.137 26 S 0.353 5.647 27 N -0.547 5.547 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.051 0.949 39 H -0.009 1.009 40 H 0.045 0.955 41 H 0.247 0.753 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 -13.170 -0.328 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.088 3.912 4 C -0.169 4.169 5 C -0.326 4.326 6 C 0.374 3.626 7 O -0.436 6.436 8 N -0.326 5.326 9 C -0.092 4.092 10 C 0.062 3.938 11 H 0.094 0.906 12 C -0.138 4.138 13 C -0.170 4.170 14 C 0.066 3.934 15 N -0.324 5.324 16 C -0.389 4.389 17 H 0.087 0.913 18 C -0.244 4.244 19 N -0.584 5.584 20 Si 0.792 3.208 21 H -0.201 1.201 22 H -0.227 1.227 23 H -0.204 1.204 24 C 0.030 3.970 25 C -0.178 4.178 26 S 0.504 5.496 27 N -0.388 5.388 28 H 0.147 0.853 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.010 0.990 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.657 -12.200 -0.329 24.859 hybrid contribution 1.141 -0.326 0.144 1.195 sum -20.516 -12.526 -0.185 24.038 Atomic orbital electron populations 1.23209 0.75128 1.05438 1.02452 1.86296 1.24597 1.22420 1.88059 1.19858 0.89645 0.85638 0.96043 1.20840 0.92742 0.98695 1.04600 1.25835 0.99026 0.98553 1.09217 1.16956 0.85779 0.82676 0.77140 1.90818 1.48130 1.53128 1.51518 1.48121 1.09713 1.06234 1.68485 1.22280 0.89793 0.94037 1.03126 1.20024 0.80112 0.97610 0.96005 0.90589 1.21161 0.95671 1.01477 0.95474 1.21896 0.95730 0.98426 1.00913 1.20839 0.91833 0.92260 0.88514 1.43833 1.70033 1.02909 1.15599 1.19456 1.06197 0.83073 1.30135 0.91270 1.25861 0.95130 1.01677 1.01709 1.70198 1.10811 1.34937 1.42499 0.85403 0.76852 0.80809 0.77695 1.20059 1.22720 1.20404 1.20696 0.92307 0.93521 0.90461 1.21639 1.00214 0.98646 0.97310 1.85129 0.87266 1.09410 1.67762 1.76272 1.29473 1.02723 1.30350 0.85256 0.92164 0.92237 0.80360 0.89588 0.89676 0.88005 0.91568 0.91658 0.91243 0.93031 0.99044 0.93669 0.94386 0.93566 0.94659 0.91385 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.43 113.37 1.18 1.58 16 2 O -0.31 -5.82 10.51 -93.13 -0.98 -6.80 16 3 C 0.30 6.33 7.36 84.75 0.62 6.95 16 4 C -0.13 -2.83 10.10 22.06 0.22 -2.61 16 5 C -0.19 -4.36 6.39 24.56 0.16 -4.20 16 6 C 0.59 16.20 7.65 86.58 0.66 16.86 16 7 O -0.56 -19.28 16.27 -4.12 -0.07 -19.35 16 8 N -0.59 -15.07 2.59 -838.08 -2.17 -17.24 16 9 C 0.05 0.95 7.86 127.77 1.00 1.96 16 10 C 0.16 4.99 1.94 43.01 0.08 5.07 16 11 H 0.08 2.62 6.05 -2.39 -0.01 2.60 16 12 C -0.10 -3.19 4.38 29.76 0.13 -3.06 16 13 C -0.13 -4.74 5.71 30.35 0.17 -4.56 16 14 C 0.19 8.90 4.67 86.61 0.40 9.31 16 15 N -0.60 -28.13 2.26 -697.67 -1.58 -29.71 16 16 C -0.26 -13.22 9.43 84.03 0.79 -12.42 16 17 H 0.07 3.40 7.85 -2.91 -0.02 3.38 16 18 C -0.05 -2.60 5.00 84.86 0.42 -2.18 16 19 N -0.94 -54.00 10.87 21.65 0.24 -53.77 16 20 Si 0.96 43.19 29.56 68.60 2.03 45.22 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.16 6.16 5.65 87.38 0.49 6.66 16 25 C -0.14 -4.29 4.88 29.40 0.14 -4.14 16 26 S 0.35 6.24 19.25 -56.49 -1.09 5.15 16 27 N -0.55 -11.37 11.03 -175.20 -1.93 -13.31 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.09 1.30 7.67 -2.39 -0.02 1.28 16 33 H 0.09 1.30 5.17 -15.93 -0.08 1.21 16 34 H 0.10 1.90 7.21 -2.39 -0.02 1.89 16 35 H 0.07 2.33 7.21 -2.39 -0.02 2.32 16 36 H 0.06 1.89 8.05 -2.38 -0.02 1.87 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.84 7.31 -2.39 -0.02 1.82 16 39 H -0.01 -0.45 8.00 -2.39 -0.02 -0.47 16 40 H 0.04 2.37 6.39 -2.39 -0.02 2.35 16 41 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.05 1.83 7.99 -2.39 -0.02 1.81 16 43 H 0.04 1.36 8.06 -2.38 -0.02 1.34 16 44 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.27 366.68 1.88 -63.38 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.93 Total: 11.21 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.50 Total: 15.21 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.44 Total: -114.02 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.05 Total: -26.15 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.09 Total: 5.15 kcal Total: -65.27 1.88 -63.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948385741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.386 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds