Wall clock time and date at job start Tue Mar 31 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35727 * 117.00462 * 2 1 4 4 C 1.39358 * 120.35826 * 0.26737 * 3 2 1 5 5 N 1.31289 * 120.88064 * 180.31965 * 4 3 2 6 6 C 1.32880 * 121.71953 * 359.71128 * 5 4 3 7 7 C 1.47764 * 119.69196 * 180.02562 * 6 5 4 8 8 O 1.21567 * 119.99987 * 179.97438 * 7 6 5 9 9 N 1.34770 * 119.99760 * 359.97438 * 7 6 5 10 10 C 1.46499 * 120.00408 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88846 * 302.56950 * 11 10 9 13 13 C 1.54913 * 111.00682 * 66.45292 * 11 10 9 14 14 N 1.47425 * 104.83267 * 155.08609 * 13 11 10 15 15 C 1.36938 * 125.64384 * 155.83847 * 14 13 11 16 16 H 1.08001 * 120.00436 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99765 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99641 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46991 * 90.00016 * 19 17 15 21 21 H 1.48502 * 109.47322 * 209.99999 * 19 17 15 22 22 H 1.48500 * 109.47535 * 330.00220 * 19 17 15 23 23 C 1.47015 * 108.70545 * 335.86715 * 14 13 11 24 24 C 1.54335 * 107.27083 * 1.06435 * 23 14 13 25 25 H 1.08994 * 110.71952 * 140.55088 * 24 23 14 26 26 O 1.42893 * 110.71776 * 263.82759 * 24 23 14 27 27 C 1.39725 * 120.62700 * 359.97438 * 6 5 4 28 28 F 1.35094 * 120.46669 * 179.97438 * 27 6 5 29 29 C 1.38692 * 119.06416 * 0.02562 * 27 6 5 30 30 H 1.08993 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46922 * 300.00562 * 1 2 3 32 32 H 1.09003 * 109.46792 * 59.99746 * 1 2 3 33 33 H 1.08001 * 119.56229 * 0.04939 * 4 3 2 34 34 H 0.97007 * 120.00306 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.46623 * 299.99981 * 10 9 7 36 36 H 1.09005 * 109.47090 * 59.99145 * 10 9 7 37 37 H 1.09007 * 110.36385 * 273.92149 * 13 11 10 38 38 H 1.08994 * 110.36652 * 36.13101 * 13 11 10 39 39 H 0.96998 * 119.99697 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.88231 * 120.47703 * 23 14 13 41 41 H 1.08992 * 109.88609 * 241.49112 * 23 14 13 42 42 H 0.96698 * 114.00037 * 293.52236 * 26 24 23 43 43 H 1.08002 * 120.78241 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2937 2.3828 0.0056 5 7 1.8791 3.5580 -0.0006 6 6 3.2023 3.6793 -0.0067 7 6 3.8140 5.0244 -0.0131 8 8 5.0239 5.1418 -0.0182 9 7 3.0304 6.1209 -0.0131 10 6 3.6367 7.4545 -0.0199 11 6 2.5347 8.5158 -0.0191 12 1 1.8711 8.3877 -0.8743 13 6 1.7392 8.4893 1.3099 14 7 1.1857 9.8489 1.4456 15 6 0.0741 10.1895 2.1692 16 1 -0.4769 9.4290 2.7027 17 6 -0.3445 11.5121 2.2171 18 7 0.3267 12.4387 1.5665 19 14 -1.8612 11.9766 3.2035 20 1 -1.4635 12.3120 4.5944 21 1 -2.5168 13.1535 2.5787 22 1 -2.8092 10.8337 3.2217 23 6 2.0244 10.7785 0.6750 24 6 3.1388 9.9447 0.0079 25 1 3.3333 10.3003 -1.0038 26 8 4.3317 9.9745 0.7940 27 6 4.0210 2.5469 -0.0062 28 9 5.3659 2.6740 -0.0130 29 6 3.4333 1.2907 0.0003 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2152 2.3249 0.0108 34 1 2.0649 6.0271 -0.0094 35 1 4.2587 7.5753 0.8671 36 1 4.2511 7.5698 -0.9129 37 1 0.9346 7.7558 1.2558 38 1 2.4025 8.2627 2.1446 39 1 0.0344 13.3630 1.6002 40 1 1.4242 11.2732 -0.0887 41 1 2.4626 11.5217 1.3410 42 1 4.7487 10.8456 0.8430 43 1 4.0395 0.3969 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958127513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:38 Heat of formation + Delta-G solvation = -93.309092 kcal Electronic energy + Delta-G solvation = -29074.396117 eV Core-core repulsion = 24649.979841 eV Total energy + Delta-G solvation = -4424.416277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.24498 -41.21218 -39.67812 -38.51602 -37.98655 -34.92485 -34.55176 -32.87847 -32.08885 -31.05684 -29.55181 -28.18354 -27.66621 -25.72028 -24.86425 -23.82028 -23.02119 -21.01693 -20.16479 -19.78114 -19.02692 -18.37729 -17.95205 -17.30538 -16.71572 -16.64262 -16.32214 -15.95247 -15.69711 -15.32325 -15.01068 -14.89226 -14.78684 -14.06751 -13.82761 -13.73135 -13.67783 -13.64070 -13.22643 -13.02767 -12.65192 -12.59511 -12.55618 -12.09538 -11.82857 -11.38942 -11.20631 -10.80692 -10.63517 -10.52572 -10.40435 -10.12759 -10.02921 -9.99684 -9.81615 -9.72720 -9.16018 -9.10240 -8.78534 -8.65149 -6.85152 -5.73745 -3.06437 0.17014 0.51800 2.36984 2.51077 3.06730 3.39061 3.43170 3.43953 3.45702 3.69426 3.79036 3.96855 4.34016 4.45686 4.47355 4.52066 4.58461 4.74196 4.84300 4.95357 5.13480 5.18241 5.33937 5.36153 5.46020 5.55970 5.62421 5.86630 5.93808 6.08048 6.12140 6.40166 6.43236 6.47530 6.53011 6.64719 6.92979 7.11733 7.40218 7.49774 7.62590 7.75189 8.21805 8.22245 8.26979 9.19393 9.80053 10.45967 11.38414 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.002619 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.936576 B =10687.828505 C =12526.966584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C 0.130 3.870 4 C 0.011 3.989 5 N -0.389 5.389 6 C 0.011 3.989 7 C 0.569 3.431 8 O -0.527 6.527 9 N -0.703 5.703 10 C 0.139 3.861 11 C -0.109 4.109 12 H 0.089 0.911 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.153 3.847 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.564 6.564 27 C 0.155 3.845 28 F -0.097 7.097 29 C -0.161 4.161 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.174 0.826 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.025 0.975 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.375 0.625 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -23.022 -6.534 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.081 3.919 4 C -0.152 4.152 5 N -0.101 5.101 6 C -0.129 4.129 7 C 0.352 3.648 8 O -0.403 6.403 9 N -0.354 5.354 10 C 0.016 3.984 11 C -0.129 4.129 12 H 0.108 0.892 13 C 0.019 3.981 14 N -0.329 5.329 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.028 3.972 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.369 6.369 27 C 0.132 3.868 28 F -0.075 7.075 29 C -0.188 4.188 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.191 0.809 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.222 0.778 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.535 -22.763 -6.418 23.786 hybrid contribution -0.808 0.219 0.456 0.954 sum 1.727 -22.543 -5.961 23.382 Atomic orbital electron populations 1.23290 0.76810 1.05085 1.02351 1.86065 1.22575 1.25429 1.87296 1.20019 0.92057 0.86149 0.93712 1.23095 1.01211 0.86353 1.04535 1.67505 1.09306 1.26893 1.06351 1.21352 0.89380 0.94227 1.07940 1.17469 0.86359 0.83078 0.77861 1.90862 1.13133 1.86260 1.50077 1.45904 1.10956 1.05670 1.72842 1.21266 0.95408 0.78756 1.03020 1.22677 0.96388 0.93152 1.00684 0.89241 1.21568 0.94642 0.88886 0.93047 1.44370 1.29559 1.01324 1.57662 1.19082 1.00893 0.92826 1.22530 0.90374 1.24795 0.99456 0.95768 1.00590 1.69932 1.40647 1.00641 1.46121 0.86093 0.82262 0.77777 0.79479 1.21628 1.21706 1.20688 1.21859 0.89541 0.90976 0.94831 1.23117 0.86017 0.95322 0.93253 0.92477 1.86404 1.40601 1.35776 1.74137 1.18238 0.78789 0.92735 0.97022 1.91653 1.27165 1.96409 1.92270 1.20821 0.92904 0.97741 1.07345 0.87337 0.91631 0.91686 0.80885 0.75383 0.89897 0.91566 0.94416 0.95679 0.93768 0.92978 0.93197 0.77794 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.02 10.50 -18.89 -0.20 -2.22 16 3 C 0.13 1.06 6.72 -38.87 -0.26 0.80 16 4 C 0.01 0.09 10.21 -17.37 -0.18 -0.09 16 5 N -0.39 -4.47 9.52 -9.63 -0.09 -4.56 16 6 C 0.01 0.14 6.75 -82.96 -0.56 -0.42 16 7 C 0.57 9.00 7.80 -12.37 -0.10 8.90 16 8 O -0.53 -9.89 15.30 5.31 0.08 -9.81 16 9 N -0.70 -10.51 5.40 -61.28 -0.33 -10.84 16 10 C 0.14 2.25 4.74 -4.05 -0.02 2.23 16 11 C -0.11 -1.90 3.03 -88.47 -0.27 -2.17 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 13 C 0.14 3.02 6.40 -2.53 -0.02 3.00 16 14 N -0.60 -15.32 3.39 -170.07 -0.58 -15.90 16 15 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 18 N -0.93 -26.87 10.31 55.49 0.57 -26.29 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.15 3.62 5.14 -3.06 -0.02 3.60 16 24 C 0.08 1.53 4.09 -24.89 -0.10 1.43 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 O -0.56 -9.96 12.10 -35.23 -0.43 -10.39 16 27 C 0.16 1.86 7.31 -38.86 -0.28 1.58 16 28 F -0.10 -1.33 15.54 2.25 0.03 -1.30 16 29 C -0.16 -1.45 10.10 -39.12 -0.40 -1.85 16 30 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.15 7.66 -51.93 -0.40 -0.25 16 32 H 0.06 0.13 7.68 -51.93 -0.40 -0.26 16 33 H 0.17 0.91 6.31 -52.49 -0.33 0.58 16 34 H 0.41 5.64 7.66 -40.82 -0.31 5.33 16 35 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 41 H 0.05 1.31 7.43 -51.93 -0.39 0.92 16 42 H 0.38 5.24 9.12 45.56 0.42 5.65 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -34.80 364.36 -6.60 -41.40 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.68 Total: 6.17 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.45 Total: 11.26 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.43 Total: -57.59 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.54 Total: -22.41 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.03 Total: -1.30 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.80 -6.60 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958127513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.907 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds