Wall clock time and date at job start Tue Mar 31 2020 23:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35727 * 117.00462 * 2 1 4 4 C 1.39358 * 120.35826 * 0.26737 * 3 2 1 5 5 N 1.31289 * 120.88064 * 180.31965 * 4 3 2 6 6 C 1.32880 * 121.71953 * 359.71128 * 5 4 3 7 7 C 1.47764 * 119.69196 * 180.02562 * 6 5 4 8 8 O 1.21567 * 119.99987 * 179.97438 * 7 6 5 9 9 N 1.34770 * 119.99760 * 359.97438 * 7 6 5 10 10 C 1.46499 * 120.00408 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88846 * 302.56950 * 11 10 9 13 13 C 1.54913 * 111.00682 * 66.45292 * 11 10 9 14 14 N 1.47425 * 104.83267 * 155.08609 * 13 11 10 15 15 C 1.36938 * 125.64384 * 155.83847 * 14 13 11 16 16 H 1.08001 * 120.00436 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99765 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99641 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46991 * 90.00016 * 19 17 15 21 21 H 1.48502 * 109.47322 * 209.99999 * 19 17 15 22 22 H 1.48500 * 109.47535 * 330.00220 * 19 17 15 23 23 C 1.47015 * 108.70545 * 335.86715 * 14 13 11 24 24 C 1.54335 * 107.27083 * 1.06435 * 23 14 13 25 25 H 1.08994 * 110.71952 * 140.55088 * 24 23 14 26 26 O 1.42893 * 110.71776 * 263.82759 * 24 23 14 27 27 C 1.39725 * 120.62700 * 359.97438 * 6 5 4 28 28 F 1.35094 * 120.46669 * 179.97438 * 27 6 5 29 29 C 1.38692 * 119.06416 * 0.02562 * 27 6 5 30 30 H 1.08993 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46922 * 300.00562 * 1 2 3 32 32 H 1.09003 * 109.46792 * 59.99746 * 1 2 3 33 33 H 1.08001 * 119.56229 * 0.04939 * 4 3 2 34 34 H 0.97007 * 120.00306 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.46623 * 299.99981 * 10 9 7 36 36 H 1.09005 * 109.47090 * 59.99145 * 10 9 7 37 37 H 1.09007 * 110.36385 * 273.92149 * 13 11 10 38 38 H 1.08994 * 110.36652 * 36.13101 * 13 11 10 39 39 H 0.96998 * 119.99697 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.88231 * 120.47703 * 23 14 13 41 41 H 1.08992 * 109.88609 * 241.49112 * 23 14 13 42 42 H 0.96698 * 114.00037 * 293.52236 * 26 24 23 43 43 H 1.08002 * 120.78241 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2937 2.3828 0.0056 5 7 1.8791 3.5580 -0.0006 6 6 3.2023 3.6793 -0.0067 7 6 3.8140 5.0244 -0.0131 8 8 5.0239 5.1418 -0.0182 9 7 3.0304 6.1209 -0.0131 10 6 3.6367 7.4545 -0.0199 11 6 2.5347 8.5158 -0.0191 12 1 1.8711 8.3877 -0.8743 13 6 1.7392 8.4893 1.3099 14 7 1.1857 9.8489 1.4456 15 6 0.0741 10.1895 2.1692 16 1 -0.4769 9.4290 2.7027 17 6 -0.3445 11.5121 2.2171 18 7 0.3267 12.4387 1.5665 19 14 -1.8612 11.9766 3.2035 20 1 -1.4635 12.3120 4.5944 21 1 -2.5168 13.1535 2.5787 22 1 -2.8092 10.8337 3.2217 23 6 2.0244 10.7785 0.6750 24 6 3.1388 9.9447 0.0079 25 1 3.3333 10.3003 -1.0038 26 8 4.3317 9.9745 0.7940 27 6 4.0210 2.5469 -0.0062 28 9 5.3659 2.6740 -0.0130 29 6 3.4333 1.2907 0.0003 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2152 2.3249 0.0108 34 1 2.0649 6.0271 -0.0094 35 1 4.2587 7.5753 0.8671 36 1 4.2511 7.5698 -0.9129 37 1 0.9346 7.7558 1.2558 38 1 2.4025 8.2627 2.1446 39 1 0.0344 13.3630 1.6002 40 1 1.4242 11.2732 -0.0887 41 1 2.4626 11.5217 1.3410 42 1 4.7487 10.8456 0.8430 43 1 4.0395 0.3969 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958127513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:37 Heat of formation + Delta-G solvation = -121.532160 kcal Electronic energy + Delta-G solvation = -29075.619961 eV Core-core repulsion = 24649.979841 eV Total energy + Delta-G solvation = -4425.640121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.17822 -41.96173 -40.78378 -39.83986 -38.95440 -36.41227 -36.12411 -34.01893 -33.49097 -32.07877 -31.08445 -29.43970 -28.50352 -27.31623 -26.03166 -25.04760 -24.02032 -22.40573 -21.73222 -21.24493 -19.70543 -19.37229 -19.04158 -18.88077 -17.99374 -17.43241 -17.36629 -16.90380 -16.79010 -16.64063 -16.23207 -16.14088 -15.75219 -15.62483 -15.37270 -15.02799 -14.77613 -14.43640 -14.38566 -14.29884 -14.12698 -13.87323 -13.53954 -13.13214 -13.08413 -12.92795 -12.67037 -12.51330 -12.34261 -12.07813 -11.90533 -11.77111 -11.67256 -11.36572 -10.85682 -10.77324 -10.74759 -10.71620 -10.19950 -9.69383 -8.90562 -7.85308 -5.20500 -0.66440 -0.20969 1.46696 1.48655 1.52967 1.57181 1.79905 2.00944 2.49374 2.50043 2.87857 2.97206 3.28239 3.33175 3.36574 3.52882 3.57569 3.73665 3.91107 3.94090 3.99866 4.02860 4.39392 4.40899 4.43469 4.43518 4.58724 4.63038 4.69897 4.82681 4.83594 4.90075 4.99859 5.12735 5.29091 5.37894 5.42570 5.53625 5.70766 5.96001 6.18212 6.25100 6.53356 6.94447 7.06128 7.09939 7.76227 8.40981 9.25037 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.002619 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.936576 B =10687.828505 C =12526.966584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.019 3.981 5 N -0.402 5.402 6 C -0.017 4.017 7 C 0.566 3.434 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.153 3.847 11 C -0.093 4.093 12 H 0.108 0.892 13 C 0.144 3.856 14 N -0.624 5.624 15 C -0.242 4.242 16 H 0.082 0.918 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.266 1.266 23 C 0.160 3.840 24 C 0.096 3.904 25 H 0.089 0.911 26 O -0.571 6.571 27 C 0.141 3.859 28 F -0.115 7.115 29 C -0.158 4.158 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.209 0.791 34 H 0.417 0.583 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.010 0.990 39 H 0.247 0.753 40 H 0.024 0.976 41 H 0.015 0.985 42 H 0.391 0.609 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -25.564 -7.047 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.097 3.903 4 C -0.145 4.145 5 N -0.113 5.113 6 C -0.155 4.155 7 C 0.352 3.648 8 O -0.445 6.445 9 N -0.348 5.348 10 C 0.030 3.970 11 C -0.112 4.112 12 H 0.126 0.874 13 C 0.019 3.981 14 N -0.350 5.350 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.259 4.259 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.191 1.191 23 C 0.035 3.965 24 C 0.036 3.964 25 H 0.107 0.893 26 O -0.378 6.378 27 C 0.118 3.882 28 F -0.093 7.093 29 C -0.184 4.184 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.225 0.775 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.240 0.760 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.833 -25.332 -6.931 26.277 hybrid contribution -0.393 0.840 0.655 1.135 sum 0.440 -24.492 -6.276 25.288 Atomic orbital electron populations 1.23684 0.74584 1.06962 1.03603 1.86094 1.24788 1.24346 1.86389 1.20029 0.91755 0.86794 0.91680 1.23673 1.02724 0.85504 1.02622 1.67469 1.08381 1.28468 1.07005 1.20930 0.90369 0.92997 1.11155 1.17875 0.85971 0.84176 0.76772 1.90827 1.14732 1.87015 1.51902 1.45795 1.11228 1.05119 1.72679 1.20983 0.94618 0.79105 1.02344 1.22568 0.96340 0.93011 0.99301 0.87401 1.21645 0.94979 0.87117 0.94387 1.44691 1.29382 1.03438 1.57505 1.19475 1.01708 0.93201 1.22666 0.89975 1.25639 1.02489 0.95818 1.01975 1.70147 1.42032 1.00520 1.47394 0.85064 0.79036 0.77537 0.77614 1.21681 1.21970 1.19101 1.21689 0.90387 0.91044 0.93424 1.22959 0.84553 0.94865 0.94034 0.89305 1.86386 1.39973 1.37249 1.74236 1.18418 0.78085 0.93629 0.98092 1.91603 1.28442 1.96583 1.92637 1.21000 0.93743 0.97193 1.06475 0.85362 0.90468 0.90270 0.77477 0.74580 0.92144 0.90715 0.93181 0.97167 0.94377 0.95741 0.96733 0.75952 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.97 10.50 -90.49 -0.95 -3.92 16 3 C 0.15 1.97 6.72 22.73 0.15 2.13 16 4 C 0.02 0.26 10.21 85.04 0.87 1.13 16 5 N -0.40 -8.58 9.52 -184.39 -1.76 -10.33 16 6 C -0.02 -0.45 6.75 41.87 0.28 -0.17 16 7 C 0.57 18.10 7.80 86.76 0.68 18.78 16 8 O -0.57 -21.82 15.30 -3.93 -0.06 -21.88 16 9 N -0.70 -20.55 5.40 -466.06 -2.51 -23.06 16 10 C 0.15 4.87 4.74 86.38 0.41 5.28 16 11 C -0.09 -3.13 3.03 -9.40 -0.03 -3.16 16 12 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 13 C 0.14 5.97 6.40 86.86 0.56 6.52 16 14 N -0.62 -32.09 3.39 -691.97 -2.35 -34.44 16 15 C -0.24 -13.55 10.28 84.03 0.86 -12.68 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 18 N -0.95 -56.64 10.31 21.65 0.22 -56.42 16 19 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.16 7.73 5.14 86.73 0.45 8.17 16 24 C 0.10 3.47 4.09 31.79 0.13 3.60 16 25 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 26 O -0.57 -19.90 12.10 -148.98 -1.80 -21.71 16 27 C 0.14 3.34 7.31 22.74 0.17 3.50 16 28 F -0.11 -3.23 15.54 44.97 0.70 -2.53 16 29 C -0.16 -2.56 10.10 22.57 0.23 -2.33 16 30 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.08 0.02 7.66 -2.39 -0.02 0.00 16 32 H 0.08 -0.02 7.68 -2.39 -0.02 -0.04 16 33 H 0.21 1.30 6.31 -2.91 -0.02 1.28 16 34 H 0.42 11.05 7.66 -92.70 -0.71 10.34 16 35 H 0.06 2.23 7.42 -2.38 -0.02 2.21 16 36 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.02 1.30 7.38 -2.39 -0.02 1.28 16 41 H 0.01 0.79 7.43 -2.39 -0.02 0.77 16 42 H 0.39 10.74 9.12 -74.06 -0.68 10.06 16 43 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -77.96 364.36 -0.46 -78.42 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.31 Total: 19.74 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 6.33 Total: 28.60 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -6.40 Total: -124.26 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.81 Total: -47.50 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.70 Total: -2.53 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.96 -0.46 -78.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958127513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.112 kcal (2) G-P(sol) polarization free energy of solvation -77.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds