Wall clock time and date at job start Tue Mar 31 2020 22:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47214 * 2 1 4 4 C 1.34772 * 119.99771 * 276.83785 * 3 2 1 5 5 O 1.21646 * 119.99729 * 176.14286 * 4 3 2 6 6 C 1.47179 * 120.00204 * 356.14644 * 4 3 2 7 7 C 1.35093 * 122.48868 * 186.46430 * 6 4 3 8 8 S 1.76189 * 108.22003 * 179.91208 * 7 6 4 9 9 C 1.76048 * 90.15798 * 0.29718 * 8 7 6 10 10 O 1.35494 * 125.18003 * 179.85938 * 9 8 7 11 11 N 1.29252 * 109.64507 * 359.82743 * 9 8 7 12 12 C 1.46498 * 119.99746 * 96.84101 * 3 2 1 13 13 H 1.09001 * 110.21745 * 0.02562 * 12 3 2 14 14 C 1.50131 * 110.36760 * 122.01273 * 12 3 2 15 15 C 1.54837 * 110.81567 * 216.71623 * 14 12 3 16 16 C 1.54906 * 110.13982 * 321.13205 * 15 14 12 17 17 N 1.43432 * 116.08175 * 318.64206 * 16 15 14 18 18 C 1.36939 * 120.53671 * 271.58592 * 17 16 15 19 19 H 1.08001 * 120.00009 * 325.46889 * 18 17 16 20 20 C 1.38815 * 119.99857 * 145.46605 * 18 17 16 21 21 N 1.31623 * 119.99662 * 4.45328 * 20 18 17 22 22 Si 1.86797 * 119.99905 * 184.45836 * 20 18 17 23 23 H 1.48498 * 109.47289 * 59.99999 * 22 20 18 24 24 H 1.48499 * 109.47129 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47124 * 299.99692 * 22 20 18 26 26 C 1.50171 * 118.92667 * 91.56830 * 17 16 15 27 27 C 1.46244 * 107.52768 * 289.58958 * 26 17 16 28 28 H 1.09002 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47543 * 300.00173 * 1 2 3 30 30 H 1.09003 * 109.47159 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47059 * 239.99660 * 2 1 3 32 32 H 1.09000 * 109.46774 * 120.00416 * 2 1 3 33 33 H 1.07998 * 125.88682 * 0.02562 * 7 6 4 34 34 H 0.96702 * 114.00507 * 269.95945 * 10 9 8 35 35 H 1.09000 * 109.21077 * 337.06107 * 14 12 3 36 36 H 1.09006 * 109.20664 * 96.37249 * 14 12 3 37 37 H 1.09005 * 109.36193 * 200.92985 * 15 14 12 38 38 H 1.08997 * 109.36197 * 81.33822 * 15 14 12 39 39 H 1.09005 * 108.15851 * 196.92275 * 16 15 14 40 40 H 1.09002 * 107.99717 * 80.23706 * 16 15 14 41 41 H 0.96997 * 119.99563 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.84310 * 170.08223 * 26 17 16 43 43 H 1.08994 * 109.89902 * 49.12511 * 26 17 16 44 44 H 1.09001 * 108.52157 * 297.16522 * 27 26 17 45 45 H 1.09002 * 108.39528 * 179.56251 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1119 2.0628 -1.1589 5 8 2.4503 3.2312 -1.1516 6 6 1.8047 1.3935 -2.4332 7 6 2.0033 1.9866 -3.6306 8 16 1.5159 0.8574 -4.8922 9 6 1.0733 -0.3274 -3.6676 10 8 0.5689 -1.5594 -3.9196 11 7 1.3034 0.1567 -2.4914 12 6 2.4050 2.0214 1.2597 13 1 2.2670 1.3303 2.0913 14 6 3.8335 2.4787 1.1965 15 6 4.5326 2.2904 2.5652 16 6 3.5572 2.6440 3.7154 17 7 2.7366 3.8028 3.5126 18 6 3.1821 5.0441 3.8813 19 1 3.8046 5.1563 4.7566 20 6 2.8335 6.1580 3.1299 21 7 2.0043 6.0342 2.1152 22 14 3.5412 7.8326 3.5589 23 1 5.0222 7.7837 3.4620 24 1 3.0171 8.8490 2.6115 25 1 3.1475 8.1965 4.9437 26 6 1.3811 3.6327 2.8889 27 6 1.5836 3.2871 1.4824 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3952 2.9806 -3.7875 34 1 -0.3965 -1.5868 -3.9684 35 1 4.3628 1.8984 0.4407 36 1 3.8606 3.5333 0.9220 37 1 5.4049 2.9420 2.6181 38 1 4.8520 1.2534 2.6682 39 1 4.1424 2.7967 4.6223 40 1 2.9022 1.7878 3.8767 41 1 1.7605 6.8126 1.5904 42 1 0.8198 4.5640 2.9641 43 1 0.8389 2.8324 3.3923 44 1 2.0885 4.1186 0.9908 45 1 0.6071 3.1525 1.0172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998092345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:33 Heat of formation + Delta-G solvation = 31.379447 kcal Electronic energy + Delta-G solvation = -29058.421568 eV Core-core repulsion = 25205.625368 eV Total energy + Delta-G solvation = -3852.796200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.76384 -39.26111 -37.73628 -36.86250 -35.44929 -32.96759 -31.43023 -30.53894 -30.21948 -29.31959 -26.41240 -25.45847 -23.81287 -23.36491 -22.93225 -21.72008 -20.13373 -19.76479 -19.18125 -18.55648 -17.44256 -16.73215 -16.42432 -15.97798 -15.32568 -15.05747 -14.78699 -14.46202 -13.96498 -13.69320 -13.68037 -13.67263 -13.44327 -13.18525 -12.79910 -12.33871 -12.13091 -12.07277 -11.98573 -11.70126 -11.56054 -11.22114 -11.01422 -10.98551 -10.75110 -10.56073 -10.25072 -10.12808 -9.84745 -9.82537 -9.80023 -9.67073 -9.35496 -9.17815 -9.07591 -9.04830 -8.33470 -7.99918 -6.42279 -5.67106 -3.20974 0.19480 0.70707 1.23187 1.83040 3.08618 3.44868 3.45742 3.50833 3.51527 3.54628 4.47857 4.58166 4.94549 5.02969 5.28191 5.43566 5.46927 5.55212 5.59646 5.71708 5.74570 5.89800 5.97665 6.03123 6.17777 6.26706 6.34588 6.42612 6.48830 6.58834 6.69168 6.74661 6.84802 6.98561 7.02640 7.07790 7.17552 7.22446 7.35414 7.48031 7.73855 7.88016 7.92791 8.27968 8.57918 8.63532 9.33937 9.95476 10.53910 11.38004 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.003429 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.927936 B = 8163.722369 C = 8906.908116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.580 3.420 5 O -0.507 6.507 6 C 0.032 3.968 7 C -0.165 4.165 8 S 0.086 5.914 9 C 0.247 3.753 10 O -0.432 6.432 11 N -0.445 5.445 12 C 0.153 3.847 13 H 0.080 0.920 14 C -0.108 4.108 15 C -0.142 4.142 16 C 0.159 3.841 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.014 3.986 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.168 3.832 27 C -0.131 4.131 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.195 0.805 34 H 0.407 0.593 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.023 0.977 41 H 0.254 0.746 42 H 0.098 0.902 43 H -0.004 1.004 44 H 0.120 0.880 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -15.485 -13.260 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.363 3.637 5 O -0.381 6.381 6 C -0.099 4.099 7 C -0.305 4.305 8 S 0.333 5.667 9 C -0.073 4.073 10 O -0.239 6.239 11 N -0.172 5.172 12 C 0.051 3.949 13 H 0.098 0.902 14 C -0.146 4.146 15 C -0.184 4.184 16 C 0.030 3.970 17 N -0.311 5.311 18 C -0.387 4.387 19 H 0.080 0.920 20 C -0.185 4.185 21 N -0.537 5.537 22 Si 0.728 3.272 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.044 3.956 27 C -0.170 4.170 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.212 0.788 34 H 0.266 0.734 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.014 0.986 44 H 0.138 0.862 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.992 -15.256 -13.999 21.087 hybrid contribution 0.047 1.146 0.651 1.319 sum -3.945 -14.110 -13.348 19.820 Atomic orbital electron populations 1.22018 0.96240 1.01104 1.01630 1.21963 0.94624 0.82399 1.03339 1.48148 1.63297 1.13933 1.06519 1.17059 0.78942 0.85781 0.81931 1.90925 1.46705 1.14581 1.85937 1.20342 1.04226 0.89470 0.95860 1.27136 1.05555 1.04690 0.93161 1.85281 1.61016 1.08178 1.12205 1.25333 1.02784 0.90324 0.88825 1.84853 1.27771 1.20881 1.90346 1.67287 1.15725 1.11310 1.22847 1.20678 0.96187 0.95606 0.82406 0.90185 1.21720 0.93695 1.02961 0.96212 1.22877 0.99907 0.98409 0.97178 1.20418 0.92213 0.89891 0.94505 1.44060 1.11996 1.02844 1.72151 1.19057 1.29468 0.83950 1.06181 0.92030 1.25283 0.98961 0.98496 0.95726 1.69862 1.34971 1.28860 1.20019 0.86454 0.79228 0.84207 0.77287 1.21048 1.21706 1.21149 1.20195 0.86592 0.98984 0.89804 1.21392 0.97794 0.97179 1.00637 0.92464 0.92977 0.92847 0.87703 0.91545 0.78767 0.73440 0.94877 0.89740 0.92863 0.94081 0.95093 0.95830 0.93551 0.88407 0.98588 0.86220 0.95906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.64 37.16 0.36 -1.56 16 2 C 0.10 1.39 5.71 -4.04 -0.02 1.36 16 3 N -0.59 -10.19 2.32 -169.38 -0.39 -10.58 16 4 C 0.58 10.57 6.92 -12.63 -0.09 10.48 16 5 O -0.51 -11.12 13.97 5.24 0.07 -11.04 16 6 C 0.03 0.46 6.35 -84.59 -0.54 -0.07 16 7 C -0.16 -1.99 10.84 29.61 0.32 -1.67 16 8 S 0.09 0.76 23.42 -107.50 -2.52 -1.76 16 9 C 0.25 2.41 8.88 51.68 0.46 2.87 16 10 O -0.43 -3.07 13.64 -18.17 -0.25 -3.32 16 11 N -0.44 -5.49 5.13 -11.34 -0.06 -5.55 16 12 C 0.15 3.01 2.38 -69.60 -0.17 2.84 16 13 H 0.08 1.51 5.89 -51.93 -0.31 1.21 16 14 C -0.11 -2.26 4.24 -27.19 -0.12 -2.38 16 15 C -0.14 -2.83 6.41 -24.76 -0.16 -2.99 16 16 C 0.16 3.42 5.18 -4.66 -0.02 3.40 16 17 N -0.59 -14.82 2.59 -175.08 -0.45 -15.27 16 18 C -0.26 -7.07 9.57 -15.06 -0.14 -7.22 16 19 H 0.06 1.69 7.83 -52.49 -0.41 1.27 16 20 C 0.01 0.40 5.34 -17.43 -0.09 0.31 16 21 N -0.89 -25.51 8.85 55.49 0.49 -25.02 16 22 Si 0.90 22.02 29.56 -169.99 -5.02 16.99 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 C 0.17 4.08 5.23 -5.20 -0.03 4.05 16 27 C -0.13 -3.02 3.62 -30.19 -0.11 -3.13 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.71 6.90 -51.93 -0.36 0.35 16 31 H 0.11 1.42 5.24 -51.93 -0.27 1.15 16 32 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 33 H 0.20 2.23 8.02 -52.49 -0.42 1.81 16 34 H 0.41 0.78 9.06 45.56 0.41 1.19 16 35 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 36 H 0.08 2.16 6.45 -51.93 -0.33 1.83 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.66 8.00 -51.93 -0.42 0.24 16 40 H 0.02 0.47 6.88 -51.93 -0.36 0.11 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.10 2.67 6.13 -51.93 -0.32 2.35 16 43 H 0.00 -0.09 8.13 -51.93 -0.42 -0.51 16 44 H 0.12 3.26 4.25 -51.93 -0.22 3.04 16 45 H 0.02 0.52 8.02 -51.93 -0.42 0.10 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -32.05 358.41 -8.55 -40.61 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.48 Total: 3.24 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.35 Total: 6.30 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.41 Total: -56.42 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.17 Total: -14.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.52 Total: -1.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.05 -8.55 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998092345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.984 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds