Wall clock time and date at job start Tue Mar 31 2020 22:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00162 * 2 1 4 4 C 1.50697 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80768 * 90.04546 * 4 3 2 6 6 C 1.30934 * 117.36666 * 179.97438 * 5 4 3 7 7 C 1.35670 * 114.19165 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.12767 * 180.02562 * 7 6 5 9 9 O 1.21683 * 120.00590 * 352.42206 * 8 7 6 10 10 N 1.34785 * 119.99305 * 172.42338 * 8 7 6 11 11 C 1.46496 * 120.00032 * 0.03633 * 10 8 7 12 12 C 1.46501 * 119.99153 * 180.02562 * 10 8 7 13 13 C 1.53038 * 109.46035 * 240.02547 * 12 10 8 14 14 C 1.53189 * 109.31286 * 178.60536 * 13 12 10 15 15 N 1.46925 * 108.76408 * 54.66240 * 14 13 12 16 16 C 1.36942 * 120.63475 * 126.40732 * 15 14 13 17 17 H 1.07999 * 119.99370 * 323.76301 * 16 15 14 18 18 C 1.38804 * 120.00222 * 143.76150 * 16 15 14 19 19 N 1.31624 * 120.00090 * 1.27099 * 18 16 15 20 20 Si 1.86802 * 120.00029 * 181.26786 * 18 16 15 21 21 H 1.48498 * 109.47109 * 90.00203 * 20 18 16 22 22 H 1.48502 * 109.46914 * 210.00119 * 20 18 16 23 23 H 1.48498 * 109.47024 * 330.00272 * 20 18 16 24 24 C 1.46923 * 118.73768 * 306.37857 * 15 14 13 25 25 C 1.53046 * 109.45634 * 119.97953 * 12 10 8 26 26 S 1.70959 * 124.80436 * 270.00163 * 4 3 2 27 27 H 1.09003 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47267 * 300.00352 * 1 2 3 29 29 H 1.09006 * 109.47248 * 60.00254 * 1 2 3 30 30 H 1.08998 * 109.47286 * 59.99923 * 3 2 1 31 31 H 1.09007 * 109.47240 * 299.99672 * 3 2 1 32 32 H 1.08000 * 122.90450 * 180.27315 * 6 5 4 33 33 H 1.09003 * 109.47161 * 83.45155 * 11 10 8 34 34 H 1.09006 * 109.46681 * 203.44506 * 11 10 8 35 35 H 1.08993 * 109.47477 * 323.44373 * 11 10 8 36 36 H 1.08998 * 109.46470 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.50166 * 298.57528 * 13 12 10 38 38 H 1.08996 * 109.49700 * 58.67187 * 13 12 10 39 39 H 1.08997 * 109.60087 * 294.87223 * 14 13 12 40 40 H 1.09000 * 109.70107 * 174.50740 * 14 13 12 41 41 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.59206 * 293.82583 * 24 15 14 43 43 H 1.09006 * 109.70697 * 173.46881 * 24 15 14 44 44 H 1.09006 * 109.49272 * 301.33250 * 25 12 10 45 45 H 1.09003 * 109.50089 * 61.42533 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1292 -1.0637 6 6 5.5430 1.0270 -0.8947 7 6 5.9332 0.9948 0.4043 8 6 7.3129 0.8862 0.8904 9 8 8.2196 0.6768 0.1064 10 7 7.5763 1.0183 2.2057 11 6 6.4846 1.2696 3.1497 12 6 8.9543 0.9103 2.6910 13 6 9.0545 -0.2463 3.6882 14 6 10.5036 -0.3783 4.1670 15 7 10.9451 0.9176 4.7003 16 6 11.4745 1.0101 5.9599 17 1 11.0870 0.3907 6.7552 18 6 12.5092 1.8997 6.2142 19 7 12.9646 2.6724 5.2508 20 14 13.2553 2.0006 7.9238 21 1 14.3853 1.0428 8.0280 22 1 13.7508 3.3792 8.1671 23 1 12.2228 1.6599 8.9353 24 6 10.8082 2.1124 3.8563 25 6 9.3557 2.2163 3.3806 26 16 4.4858 1.1091 1.4027 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 6.2401 0.9770 -1.7181 33 1 6.0141 0.3245 3.4210 34 1 6.8815 1.7480 4.0451 35 1 5.7461 1.9231 2.6855 36 1 9.6221 0.7240 1.8500 37 1 8.4058 -0.0484 4.5414 38 1 8.7461 -1.1725 3.2032 39 1 11.1405 -0.6652 3.3303 40 1 10.5647 -1.1351 4.9491 41 1 13.6878 3.2938 5.4285 42 1 11.4699 2.0287 2.9942 43 1 11.0686 3.0008 4.4318 44 1 9.2617 3.0432 2.6766 45 1 8.7041 2.3909 4.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006478445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:11 Heat of formation + Delta-G solvation = 1.396583 kcal Electronic energy + Delta-G solvation = -27105.696654 eV Core-core repulsion = 23251.600299 eV Total energy + Delta-G solvation = -3854.096354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41581 -39.61519 -38.19244 -37.35905 -35.24598 -32.75488 -31.71761 -30.28761 -29.72249 -28.63747 -27.23694 -26.60885 -25.23920 -24.17773 -22.66157 -22.19120 -20.93616 -19.30054 -18.92029 -18.59225 -17.06794 -17.01624 -16.63941 -16.45738 -15.91899 -15.64489 -15.47811 -14.92668 -14.69469 -14.20518 -13.98486 -13.69906 -13.61470 -13.19094 -13.08669 -13.05258 -12.94668 -12.61991 -12.56315 -12.38275 -11.94251 -11.71815 -11.52078 -11.01346 -10.91037 -10.80691 -10.37784 -10.33072 -10.24585 -10.12552 -10.02534 -9.85309 -9.76967 -9.64168 -9.59418 -9.23908 -8.56598 -8.39734 -6.58494 -5.82642 -3.36334 -0.04052 0.91613 1.34878 2.20650 2.93962 3.07761 3.31260 3.34887 3.41472 3.42162 3.94153 4.40737 4.44736 4.45808 4.79535 4.84872 4.85493 4.90421 4.95383 5.09076 5.16444 5.21262 5.30170 5.37180 5.49294 5.52876 5.57709 5.80590 5.86095 6.04530 6.14292 6.28847 6.45770 6.50334 6.52385 6.60398 6.75377 6.81657 6.93791 7.29807 7.36604 7.42834 7.72296 7.75896 8.08348 8.48766 9.20695 9.79017 10.39847 11.24805 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.002276 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.550777 B =12298.320078 C =12731.186953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.011 3.989 5 N -0.463 5.463 6 C 0.114 3.886 7 C -0.283 4.283 8 C 0.589 3.411 9 O -0.525 6.525 10 N -0.599 5.599 11 C 0.063 3.937 12 C 0.146 3.854 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.256 4.256 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.173 3.827 25 C -0.147 4.147 26 S 0.224 5.776 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.189 0.811 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.020 0.980 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 -1.451 -7.536 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.263 4.263 5 N -0.179 5.179 6 C -0.044 4.044 7 C -0.407 4.407 8 C 0.375 3.625 9 O -0.403 6.403 10 N -0.331 5.331 11 C -0.082 4.082 12 C 0.045 3.955 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.386 4.386 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.047 3.953 25 C -0.188 4.188 26 S 0.482 5.518 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.206 0.794 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.254 -1.561 -7.340 25.388 hybrid contribution 0.647 0.292 0.075 0.714 sum -23.607 -1.270 -7.265 24.732 Atomic orbital electron populations 1.22819 0.79919 1.03396 1.00370 1.87967 1.20362 1.26243 1.95522 1.20793 0.84745 0.86083 1.02471 1.27426 1.00938 1.03330 0.94598 1.66216 1.04804 1.14896 1.31956 1.22146 0.90723 0.95957 0.95588 1.26010 0.98305 1.18353 0.98043 1.16815 0.85688 0.77472 0.82553 1.90842 1.45153 1.49488 1.54839 1.48044 1.09419 1.69972 1.05640 1.21996 0.89495 1.01558 0.95138 1.21324 0.79568 0.96953 0.97628 1.22390 1.00959 0.96495 0.97993 1.20891 0.90562 0.89783 0.96703 1.44012 1.72454 1.00766 1.14380 1.19120 1.11304 1.22157 0.86001 0.91910 1.25358 0.96430 0.99637 0.97542 1.69903 1.28339 1.25133 1.31306 0.86275 0.79462 0.76993 0.83899 1.21247 1.21646 1.20432 1.20863 0.87985 0.92621 0.93860 1.22642 1.02434 0.94794 0.98892 1.84401 0.95118 1.63741 1.08510 0.89063 0.93609 0.93580 0.90761 0.90158 0.79423 0.91567 0.88169 0.91566 0.88295 0.92060 0.92878 0.96124 0.92350 0.93431 0.96210 0.88413 0.93008 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.85 16 3 C 0.14 1.08 6.51 36.00 0.23 1.31 16 4 C 0.01 0.11 7.02 -13.29 -0.09 0.02 16 5 N -0.46 -5.87 10.51 -11.50 -0.12 -5.99 16 6 C 0.11 1.47 11.10 -18.85 -0.21 1.26 16 7 C -0.28 -3.71 6.25 -37.09 -0.23 -3.94 16 8 C 0.59 9.34 7.65 -12.85 -0.10 9.24 16 9 O -0.53 -10.08 16.20 5.20 0.08 -10.00 16 10 N -0.60 -8.89 2.76 -175.43 -0.48 -9.38 16 11 C 0.06 0.70 8.00 59.84 0.48 1.18 16 12 C 0.15 2.55 2.47 -67.89 -0.17 2.39 16 13 C -0.14 -2.37 5.34 -26.61 -0.14 -2.51 16 14 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 15 N -0.59 -14.49 2.99 -172.33 -0.51 -15.00 16 16 C -0.26 -6.82 9.54 -15.06 -0.14 -6.97 16 17 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 18 C 0.01 0.25 5.27 -17.43 -0.09 0.16 16 19 N -0.90 -25.65 10.80 55.49 0.60 -25.05 16 20 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.17 4.06 5.23 -3.71 -0.02 4.04 16 25 C -0.15 -2.75 5.32 -26.61 -0.14 -2.89 16 26 S 0.22 2.17 18.09 -107.50 -1.94 0.23 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 34 H 0.10 1.11 6.47 -51.93 -0.34 0.77 16 35 H 0.07 0.64 4.60 -23.54 -0.11 0.53 16 36 H 0.10 1.97 6.89 -51.93 -0.36 1.61 16 37 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.56 6.10 -51.93 -0.32 2.24 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.03 6.73 -51.93 -0.35 0.69 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -32.50 371.87 -8.18 -40.67 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.46 Total: -1.00 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 0.46 Total: 7.59 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.52 Total: -55.42 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.29 Total: -13.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.94 Total: 0.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.50 -8.18 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006478445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.069 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds