Wall clock time and date at job start Tue Mar 31 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00162 * 2 1 4 4 C 1.50697 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.29432 * 124.80768 * 90.04546 * 4 3 2 6 6 C 1.30934 * 117.36666 * 179.97438 * 5 4 3 7 7 C 1.35670 * 114.19165 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.12767 * 180.02562 * 7 6 5 9 9 O 1.21683 * 120.00590 * 352.42206 * 8 7 6 10 10 N 1.34785 * 119.99305 * 172.42338 * 8 7 6 11 11 C 1.46496 * 120.00032 * 0.03633 * 10 8 7 12 12 C 1.46501 * 119.99153 * 180.02562 * 10 8 7 13 13 C 1.53038 * 109.46035 * 240.02547 * 12 10 8 14 14 C 1.53189 * 109.31286 * 178.60536 * 13 12 10 15 15 N 1.46925 * 108.76408 * 54.66240 * 14 13 12 16 16 C 1.36942 * 120.63475 * 126.40732 * 15 14 13 17 17 H 1.07999 * 119.99370 * 323.76301 * 16 15 14 18 18 C 1.38804 * 120.00222 * 143.76150 * 16 15 14 19 19 N 1.31624 * 120.00090 * 1.27099 * 18 16 15 20 20 Si 1.86802 * 120.00029 * 181.26786 * 18 16 15 21 21 H 1.48498 * 109.47109 * 90.00203 * 20 18 16 22 22 H 1.48502 * 109.46914 * 210.00119 * 20 18 16 23 23 H 1.48498 * 109.47024 * 330.00272 * 20 18 16 24 24 C 1.46923 * 118.73768 * 306.37857 * 15 14 13 25 25 C 1.53046 * 109.45634 * 119.97953 * 12 10 8 26 26 S 1.70959 * 124.80436 * 270.00163 * 4 3 2 27 27 H 1.09003 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47267 * 300.00352 * 1 2 3 29 29 H 1.09006 * 109.47248 * 60.00254 * 1 2 3 30 30 H 1.08998 * 109.47286 * 59.99923 * 3 2 1 31 31 H 1.09007 * 109.47240 * 299.99672 * 3 2 1 32 32 H 1.08000 * 122.90450 * 180.27315 * 6 5 4 33 33 H 1.09003 * 109.47161 * 83.45155 * 11 10 8 34 34 H 1.09006 * 109.46681 * 203.44506 * 11 10 8 35 35 H 1.08993 * 109.47477 * 323.44373 * 11 10 8 36 36 H 1.08998 * 109.46470 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.50166 * 298.57528 * 13 12 10 38 38 H 1.08996 * 109.49700 * 58.67187 * 13 12 10 39 39 H 1.08997 * 109.60087 * 294.87223 * 14 13 12 40 40 H 1.09000 * 109.70107 * 174.50740 * 14 13 12 41 41 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.59206 * 293.82583 * 24 15 14 43 43 H 1.09006 * 109.70697 * 173.46881 * 24 15 14 44 44 H 1.09006 * 109.49272 * 301.33250 * 25 12 10 45 45 H 1.09003 * 109.50089 * 61.42533 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1292 -1.0637 6 6 5.5430 1.0270 -0.8947 7 6 5.9332 0.9948 0.4043 8 6 7.3129 0.8862 0.8904 9 8 8.2196 0.6768 0.1064 10 7 7.5763 1.0183 2.2057 11 6 6.4846 1.2696 3.1497 12 6 8.9543 0.9103 2.6910 13 6 9.0545 -0.2463 3.6882 14 6 10.5036 -0.3783 4.1670 15 7 10.9451 0.9176 4.7003 16 6 11.4745 1.0101 5.9599 17 1 11.0870 0.3907 6.7552 18 6 12.5092 1.8997 6.2142 19 7 12.9646 2.6724 5.2508 20 14 13.2553 2.0006 7.9238 21 1 14.3853 1.0428 8.0280 22 1 13.7508 3.3792 8.1671 23 1 12.2228 1.6599 8.9353 24 6 10.8082 2.1124 3.8563 25 6 9.3557 2.2163 3.3806 26 16 4.4858 1.1091 1.4027 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 6.2401 0.9770 -1.7181 33 1 6.0141 0.3245 3.4210 34 1 6.8815 1.7480 4.0451 35 1 5.7461 1.9231 2.6855 36 1 9.6221 0.7240 1.8500 37 1 8.4058 -0.0484 4.5414 38 1 8.7461 -1.1725 3.2032 39 1 11.1405 -0.6652 3.3303 40 1 10.5647 -1.1351 4.9491 41 1 13.6878 3.2938 5.4285 42 1 11.4699 2.0287 2.9942 43 1 11.0686 3.0008 4.4318 44 1 9.2617 3.0432 2.6766 45 1 8.7041 2.3909 4.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006478445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:10 Heat of formation + Delta-G solvation = -20.607615 kcal Electronic energy + Delta-G solvation = -27106.650827 eV Core-core repulsion = 23251.600299 eV Total energy + Delta-G solvation = -3855.050528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53379 -40.65056 -39.02287 -38.66239 -36.70508 -34.44684 -32.78626 -31.84353 -31.36965 -29.52204 -28.30366 -27.28730 -26.77475 -25.13972 -24.04035 -23.84636 -22.28297 -20.70386 -20.02018 -19.62474 -18.74855 -17.75851 -17.64942 -17.55315 -16.93056 -16.70313 -16.53779 -16.27204 -15.77700 -15.44915 -15.34254 -15.16188 -14.90101 -14.77803 -14.32177 -14.15316 -14.10006 -13.69731 -13.65903 -13.25187 -13.22684 -12.85258 -12.75074 -12.60327 -12.51515 -12.37129 -12.08613 -11.96549 -11.91185 -11.55381 -11.39858 -11.19643 -10.81739 -10.61762 -10.56840 -10.53813 -10.16149 -9.65228 -8.57009 -7.86653 -5.43831 -0.94531 0.06013 0.48418 1.23943 1.48835 1.50347 1.58970 1.75863 1.99341 2.50892 2.66844 3.24475 3.31087 3.40834 3.67752 3.82999 3.88372 3.93802 4.03361 4.14184 4.25586 4.30045 4.37255 4.41250 4.45805 4.54648 4.59726 4.60984 4.65806 4.78602 4.86441 4.91192 4.93513 5.01392 5.05460 5.14383 5.30700 5.42722 5.50778 5.66187 5.75825 6.06535 6.16556 6.45814 6.52423 6.88238 7.17802 7.83387 8.39896 9.18975 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.002276 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.550777 B =12298.320078 C =12731.186953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.007 3.993 5 N -0.489 5.489 6 C 0.113 3.887 7 C -0.315 4.315 8 C 0.587 3.413 9 O -0.571 6.571 10 N -0.597 5.597 11 C 0.055 3.945 12 C 0.156 3.844 13 C -0.122 4.122 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.070 0.930 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.264 1.264 24 C 0.181 3.819 25 C -0.130 4.130 26 S 0.300 5.700 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.007 0.993 40 H 0.066 0.934 41 H 0.250 0.750 42 H -0.013 1.013 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 -1.840 -5.877 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.265 4.265 5 N -0.206 5.206 6 C -0.047 4.047 7 C -0.439 4.439 8 C 0.375 3.625 9 O -0.453 6.453 10 N -0.328 5.328 11 C -0.089 4.089 12 C 0.054 3.946 13 C -0.162 4.162 14 C 0.018 3.982 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.189 1.189 24 C 0.054 3.946 25 C -0.170 4.170 26 S 0.559 5.441 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.201 0.799 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.005 0.995 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.802 -1.967 -5.650 28.438 hybrid contribution 1.617 0.382 -0.474 1.728 sum -26.185 -1.584 -6.123 26.938 Atomic orbital electron populations 1.23020 0.78021 1.04272 1.01715 1.87912 1.22468 1.26890 1.95815 1.21042 0.82810 0.86181 1.04485 1.28083 1.02502 1.01232 0.94730 1.66288 1.04612 1.16494 1.33158 1.22186 0.91161 0.95556 0.95756 1.25751 0.98411 1.20613 0.99147 1.17140 0.86442 0.76555 0.82353 1.90812 1.46907 1.51566 1.55976 1.47931 1.09100 1.69658 1.06068 1.22300 0.88742 1.03293 0.94535 1.20922 0.80939 0.96285 0.96491 1.22185 0.98482 0.97116 0.98377 1.21012 0.92527 0.88303 0.96384 1.44244 1.72817 1.02222 1.14035 1.19476 1.11108 1.21597 0.87099 0.91221 1.26128 0.97160 0.99784 1.01151 1.70101 1.28826 1.25955 1.33275 0.85231 0.78598 0.76365 0.79986 1.21448 1.22139 1.18882 1.20580 0.90481 0.91428 0.92094 1.22357 0.99211 0.95860 0.99540 1.83934 0.91910 1.61984 1.06306 0.88533 0.91731 0.92749 0.87483 0.89444 0.79931 0.89234 0.87518 0.89945 0.91306 0.90372 0.91063 0.97535 0.91585 0.94042 0.99475 0.91422 0.92555 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.37 10.69 -148.98 -1.59 -7.96 16 3 C 0.13 1.67 6.51 71.23 0.46 2.13 16 4 C 0.01 0.13 7.02 88.46 0.62 0.76 16 5 N -0.49 -11.84 10.51 -190.30 -2.00 -13.83 16 6 C 0.11 2.89 11.10 84.23 0.93 3.82 16 7 C -0.31 -7.90 6.25 23.88 0.15 -7.75 16 8 C 0.59 18.42 7.65 86.45 0.66 19.08 16 9 O -0.57 -22.68 16.20 -4.30 -0.07 -22.75 16 10 N -0.60 -16.80 2.76 -827.14 -2.28 -19.08 16 11 C 0.05 1.02 8.00 127.77 1.02 2.05 16 12 C 0.16 5.38 2.47 45.02 0.11 5.49 16 13 C -0.12 -3.96 5.34 30.67 0.16 -3.80 16 14 C 0.14 5.90 6.52 86.36 0.56 6.47 16 15 N -0.61 -30.08 2.99 -699.12 -2.09 -32.16 16 16 C -0.26 -14.00 9.54 84.03 0.80 -13.19 16 17 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 18 C -0.05 -2.56 5.27 84.86 0.45 -2.11 16 19 N -0.94 -54.87 10.80 21.65 0.23 -54.63 16 20 Si 0.97 43.82 29.55 68.60 2.03 45.85 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.18 8.75 5.23 86.36 0.45 9.21 16 25 C -0.13 -4.81 5.32 30.67 0.16 -4.65 16 26 S 0.30 4.83 18.09 -56.49 -1.02 3.80 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.09 1.31 7.82 -2.39 -0.02 1.29 16 34 H 0.11 1.93 6.47 -2.38 -0.02 1.91 16 35 H 0.08 1.26 4.60 -20.44 -0.09 1.17 16 36 H 0.07 2.83 6.89 -2.39 -0.02 2.81 16 37 H 0.08 2.32 7.72 -2.39 -0.02 2.30 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.07 3.69 6.10 -2.38 -0.01 3.67 16 44 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.07 2.51 6.73 -2.39 -0.02 2.49 16 Total: -1.00 -73.18 371.87 1.92 -71.25 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.92 Total: 10.59 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.80 Total: 18.93 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.14 Total: -119.72 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.66 Total: -30.71 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.02 Total: 3.80 kcal Total: -73.18 1.92 -71.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006478445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.646 kcal (2) G-P(sol) polarization free energy of solvation -73.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds