Wall clock time and date at job start Tue Mar 31 2020 22:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47361 * 2 1 4 4 C 1.34775 * 119.99768 * 82.45939 * 3 2 1 5 5 O 1.21690 * 119.99898 * 183.56361 * 4 3 2 6 6 C 1.46683 * 120.00116 * 3.29875 * 4 3 2 7 7 S 1.76214 * 126.12984 * 351.96334 * 6 4 3 8 8 C 1.70953 * 90.31236 * 179.97438 * 7 6 4 9 9 N 1.29421 * 110.39270 * 0.30076 * 8 7 6 10 10 C 1.30946 * 117.36413 * 359.76389 * 9 8 7 11 11 C 1.50699 * 122.90370 * 179.97438 * 10 9 8 12 12 O 1.42906 * 109.46851 * 270.03624 * 11 10 9 13 13 C 1.42899 * 113.99874 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00058 * 262.46693 * 3 2 1 15 15 H 1.09003 * 110.88458 * 10.22367 * 14 3 2 16 16 C 1.55157 * 111.00543 * 246.34067 * 14 3 2 17 17 C 1.54326 * 102.93960 * 277.42996 * 16 14 3 18 18 N 1.47020 * 107.27147 * 337.80643 * 17 16 14 19 19 C 1.36940 * 125.64768 * 178.99435 * 18 17 16 20 20 H 1.08000 * 119.99989 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99994 * 359.96409 * 19 18 17 22 22 N 1.31624 * 119.99929 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00129 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46664 * 60.00265 * 23 21 19 25 25 H 1.48497 * 109.47242 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47305 * 300.01077 * 23 21 19 27 27 C 1.47431 * 108.70589 * 358.94069 * 18 17 16 28 28 H 1.08999 * 109.47162 * 300.00159 * 1 2 3 29 29 H 1.08998 * 109.47080 * 59.99903 * 1 2 3 30 30 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47188 * 240.00551 * 2 1 3 32 32 H 1.08998 * 109.47779 * 119.99828 * 2 1 3 33 33 H 1.07997 * 124.79844 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.47480 * 30.03353 * 11 10 9 35 35 H 1.09000 * 109.47359 * 150.03657 * 11 10 9 36 36 H 1.08994 * 109.47219 * 59.99752 * 13 12 11 37 37 H 1.08998 * 109.46875 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.46755 * 299.99441 * 13 12 11 39 39 H 1.08998 * 110.71421 * 35.78842 * 16 14 3 40 40 H 1.08994 * 110.71836 * 159.06304 * 16 14 3 41 41 H 1.09004 * 109.88209 * 97.22456 * 17 16 14 42 42 H 1.08998 * 109.87902 * 218.38872 * 17 16 14 43 43 H 0.97003 * 119.99423 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36498 * 265.29126 * 27 18 17 45 45 H 1.08998 * 110.36429 * 142.96952 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0986 2.0676 1.1571 5 8 2.4423 3.2349 1.1496 6 6 1.7660 1.4092 2.4250 7 16 1.0593 -0.1945 2.6088 8 6 1.0768 -0.0176 4.3091 9 7 1.5621 1.1364 4.6374 10 6 1.9416 1.9282 3.6660 11 6 2.5228 3.2978 3.9059 12 8 1.4700 4.2637 3.9341 13 6 1.9159 5.6030 4.1563 14 6 2.4194 2.0164 -1.2578 15 1 2.1294 1.4044 -2.1119 16 6 3.9435 2.3064 -1.2732 17 6 4.0499 3.6376 -0.4999 18 7 2.7347 4.2908 -0.5722 19 6 2.4052 5.4877 0.0058 20 1 1.4072 5.8849 -0.1064 21 6 3.3537 6.1902 0.7362 22 7 4.5701 5.7062 0.8727 23 14 2.9040 7.8225 1.5253 24 1 1.7907 7.6174 2.4866 25 1 4.0844 8.3672 2.2430 26 1 2.4792 8.7806 0.4733 27 6 1.8298 3.4445 -1.3713 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.7277 -0.7616 5.0098 34 1 3.0499 3.3068 4.8600 35 1 3.2192 3.5426 3.1038 36 1 2.5994 5.8954 3.3592 37 1 1.0578 6.2751 4.1634 38 1 2.4305 5.6602 5.1154 39 1 4.4914 1.5168 -0.7590 40 1 4.3033 2.4243 -2.2953 41 1 4.3100 3.4422 0.5405 42 1 4.8058 4.2741 -0.9599 43 1 5.2331 6.1974 1.3828 44 1 1.8245 3.7712 -2.4112 45 1 0.8213 3.4725 -0.9588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033979048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:44 Heat of formation + Delta-G solvation = 67.998148 kcal Electronic energy + Delta-G solvation = -30431.640719 eV Core-core repulsion = 26580.432426 eV Total energy + Delta-G solvation = -3851.208294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.21612 -39.30587 -36.83636 -36.08680 -35.44808 -32.31508 -30.80881 -30.12210 -28.87276 -27.90438 -26.88021 -25.64317 -24.29304 -24.08700 -23.31931 -21.96813 -19.85802 -19.47941 -18.47238 -17.73200 -16.71587 -16.42551 -16.04116 -15.81234 -15.07293 -14.94029 -14.72037 -14.42473 -14.33410 -14.14979 -13.86847 -13.62732 -13.40201 -13.05596 -12.46983 -12.39916 -11.94691 -11.87547 -11.74434 -11.64312 -11.62504 -11.42353 -11.14554 -10.86332 -10.68845 -10.65906 -10.39359 -10.03828 -9.98776 -9.72981 -9.42178 -9.39832 -9.10092 -8.97464 -8.71109 -8.47783 -8.37852 -7.86619 -6.24888 -5.40256 -2.64648 0.54863 1.42510 1.79502 2.74458 3.35520 3.49634 3.56362 3.57920 3.82873 4.26615 4.70005 4.73106 4.81257 4.99329 5.13015 5.25890 5.33144 5.42458 5.49626 5.56321 5.67274 5.70320 5.76360 5.85725 5.88928 6.02452 6.03307 6.07477 6.17135 6.21603 6.25118 6.49724 6.50965 6.56602 6.59837 6.64528 6.76538 7.24275 7.77029 7.77900 7.82239 7.88479 7.96549 8.10696 8.54629 9.03988 9.51661 10.13287 10.79114 11.72640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006758 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.690223 B = 4142.431003 C = 5882.613108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.529 3.471 5 O -0.367 6.367 6 C -0.242 4.242 7 S 0.171 5.829 8 C -0.022 4.022 9 N -0.466 5.466 10 C 0.125 3.875 11 C 0.134 3.866 12 O -0.375 6.375 13 C 0.037 3.963 14 C 0.136 3.864 15 H 0.084 0.916 16 C -0.161 4.161 17 C 0.191 3.809 18 N -0.564 5.564 19 C -0.180 4.180 20 H 0.065 0.935 21 C -0.005 4.005 22 N -0.923 5.923 23 Si 0.884 3.116 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.130 3.870 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.193 0.807 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.243 0.757 44 H 0.024 0.976 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 -15.965 0.412 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 N -0.347 5.347 4 C 0.311 3.689 5 O -0.231 6.231 6 C -0.367 4.367 7 S 0.426 5.574 8 C -0.317 4.317 9 N -0.179 5.179 10 C -0.012 4.012 11 C 0.055 3.945 12 O -0.293 6.293 13 C -0.059 4.059 14 C 0.032 3.968 15 H 0.102 0.898 16 C -0.201 4.201 17 C 0.067 3.933 18 N -0.290 5.290 19 C -0.309 4.309 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.716 3.284 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.222 1.222 27 C 0.002 3.998 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.209 0.791 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.028 -15.834 0.507 16.950 hybrid contribution 0.200 1.378 0.967 1.695 sum -5.828 -14.456 1.474 15.656 Atomic orbital electron populations 1.22424 0.95849 1.02299 1.03068 1.21702 0.94693 0.84170 1.02016 1.47659 1.67470 1.12729 1.06814 1.17218 0.82253 0.87810 0.81587 1.91702 1.37606 1.10884 1.82948 1.26297 1.11925 0.98239 1.00223 1.84338 1.56030 1.15004 1.01988 1.28972 1.02745 0.98143 1.01825 1.66097 1.12385 1.03114 1.36345 1.20254 0.97991 0.96838 0.86078 1.20948 0.89794 0.82146 1.01632 1.87803 1.31728 1.16009 1.93795 1.22918 1.00775 0.82876 0.99381 1.22316 0.95708 0.94929 0.83815 0.89826 1.23408 0.94557 1.01253 1.00866 1.21109 0.87609 0.86995 0.97621 1.44132 1.06935 1.20197 1.57697 1.18722 0.95644 0.92791 1.23758 0.91717 1.24467 0.96147 0.98039 1.01306 1.69935 1.02825 1.38210 1.46380 0.86744 0.77089 0.84859 0.79678 1.20647 1.22036 1.22213 1.21768 0.94577 0.88541 0.94877 0.91829 0.91695 0.91373 0.89482 0.91063 0.79056 0.93227 0.88078 0.91903 0.90351 0.95380 0.92467 0.91873 0.92583 0.95042 0.94614 0.95902 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.99 37.15 0.33 -1.47 16 2 C 0.10 1.13 5.67 -4.04 -0.02 1.11 16 3 N -0.61 -9.74 2.58 -165.19 -0.43 -10.17 16 4 C 0.53 10.36 7.01 -12.85 -0.09 10.27 16 5 O -0.37 -8.73 6.33 5.20 0.03 -8.70 16 6 C -0.24 -4.27 6.12 -37.10 -0.23 -4.49 16 7 S 0.17 2.03 15.74 -107.50 -1.69 0.34 16 8 C -0.02 -0.28 12.22 51.75 0.63 0.35 16 9 N -0.47 -8.00 10.50 -11.54 -0.12 -8.12 16 10 C 0.12 2.38 6.42 -83.89 -0.54 1.84 16 11 C 0.13 2.80 5.65 36.01 0.20 3.01 16 12 O -0.37 -8.42 10.69 -35.23 -0.38 -8.80 16 13 C 0.04 0.77 10.27 101.05 1.04 1.81 16 14 C 0.14 2.26 3.77 -65.78 -0.25 2.01 16 15 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 16 C -0.16 -2.95 6.52 -24.90 -0.16 -3.11 16 17 C 0.19 4.61 4.21 -3.06 -0.01 4.60 16 18 N -0.56 -14.13 1.73 -170.07 -0.29 -14.43 16 19 C -0.18 -5.04 8.76 -15.06 -0.13 -5.17 16 20 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.15 5.25 -17.43 -0.09 -0.24 16 22 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 23 Si 0.88 22.32 27.16 -169.99 -4.62 17.70 16 24 H -0.28 -6.73 5.91 56.52 0.33 -6.40 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 C 0.13 2.67 6.19 -2.52 -0.02 2.65 16 28 H 0.06 0.77 6.15 -49.32 -0.30 0.46 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 32 H 0.07 0.79 4.39 -22.17 -0.10 0.69 16 33 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 2.41 6.22 -51.93 -0.32 2.09 16 36 H 0.06 1.48 4.88 -51.93 -0.25 1.23 16 37 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.53 5.80 -51.93 -0.30 1.23 16 42 H 0.03 0.86 7.50 -51.93 -0.39 0.47 16 43 H 0.24 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -33.11 350.17 -7.29 -40.40 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.32 Total: -0.34 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 0.67 Total: 13.16 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.27 Total: -59.05 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.34 Total: -17.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.62 Total: 17.70 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.69 Total: 0.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.11 -7.29 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.399 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds