Wall clock time and date at job start Tue Mar 31 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47361 * 2 1 4 4 C 1.34775 * 119.99768 * 82.45939 * 3 2 1 5 5 O 1.21690 * 119.99898 * 183.56361 * 4 3 2 6 6 C 1.46683 * 120.00116 * 3.29875 * 4 3 2 7 7 S 1.76214 * 126.12984 * 351.96334 * 6 4 3 8 8 C 1.70953 * 90.31236 * 179.97438 * 7 6 4 9 9 N 1.29421 * 110.39270 * 0.30076 * 8 7 6 10 10 C 1.30946 * 117.36413 * 359.76389 * 9 8 7 11 11 C 1.50699 * 122.90370 * 179.97438 * 10 9 8 12 12 O 1.42906 * 109.46851 * 270.03624 * 11 10 9 13 13 C 1.42899 * 113.99874 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00058 * 262.46693 * 3 2 1 15 15 H 1.09003 * 110.88458 * 10.22367 * 14 3 2 16 16 C 1.55157 * 111.00543 * 246.34067 * 14 3 2 17 17 C 1.54326 * 102.93960 * 277.42996 * 16 14 3 18 18 N 1.47020 * 107.27147 * 337.80643 * 17 16 14 19 19 C 1.36940 * 125.64768 * 178.99435 * 18 17 16 20 20 H 1.08000 * 119.99989 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99994 * 359.96409 * 19 18 17 22 22 N 1.31624 * 119.99929 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00129 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46664 * 60.00265 * 23 21 19 25 25 H 1.48497 * 109.47242 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47305 * 300.01077 * 23 21 19 27 27 C 1.47431 * 108.70589 * 358.94069 * 18 17 16 28 28 H 1.08999 * 109.47162 * 300.00159 * 1 2 3 29 29 H 1.08998 * 109.47080 * 59.99903 * 1 2 3 30 30 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47188 * 240.00551 * 2 1 3 32 32 H 1.08998 * 109.47779 * 119.99828 * 2 1 3 33 33 H 1.07997 * 124.79844 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.47480 * 30.03353 * 11 10 9 35 35 H 1.09000 * 109.47359 * 150.03657 * 11 10 9 36 36 H 1.08994 * 109.47219 * 59.99752 * 13 12 11 37 37 H 1.08998 * 109.46875 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.46755 * 299.99441 * 13 12 11 39 39 H 1.08998 * 110.71421 * 35.78842 * 16 14 3 40 40 H 1.08994 * 110.71836 * 159.06304 * 16 14 3 41 41 H 1.09004 * 109.88209 * 97.22456 * 17 16 14 42 42 H 1.08998 * 109.87902 * 218.38872 * 17 16 14 43 43 H 0.97003 * 119.99423 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36498 * 265.29126 * 27 18 17 45 45 H 1.08998 * 110.36429 * 142.96952 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0986 2.0676 1.1571 5 8 2.4423 3.2349 1.1496 6 6 1.7660 1.4092 2.4250 7 16 1.0593 -0.1945 2.6088 8 6 1.0768 -0.0176 4.3091 9 7 1.5621 1.1364 4.6374 10 6 1.9416 1.9282 3.6660 11 6 2.5228 3.2978 3.9059 12 8 1.4700 4.2637 3.9341 13 6 1.9159 5.6030 4.1563 14 6 2.4194 2.0164 -1.2578 15 1 2.1294 1.4044 -2.1119 16 6 3.9435 2.3064 -1.2732 17 6 4.0499 3.6376 -0.4999 18 7 2.7347 4.2908 -0.5722 19 6 2.4052 5.4877 0.0058 20 1 1.4072 5.8849 -0.1064 21 6 3.3537 6.1902 0.7362 22 7 4.5701 5.7062 0.8727 23 14 2.9040 7.8225 1.5253 24 1 1.7907 7.6174 2.4866 25 1 4.0844 8.3672 2.2430 26 1 2.4792 8.7806 0.4733 27 6 1.8298 3.4445 -1.3713 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.7277 -0.7616 5.0098 34 1 3.0499 3.3068 4.8600 35 1 3.2192 3.5426 3.1038 36 1 2.5994 5.8954 3.3592 37 1 1.0578 6.2751 4.1634 38 1 2.4305 5.6602 5.1154 39 1 4.4914 1.5168 -0.7590 40 1 4.3033 2.4243 -2.2953 41 1 4.3100 3.4422 0.5405 42 1 4.8058 4.2741 -0.9599 43 1 5.2331 6.1974 1.3828 44 1 1.8245 3.7712 -2.4112 45 1 0.8213 3.4725 -0.9588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033979048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:43 Heat of formation + Delta-G solvation = 43.814620 kcal Electronic energy + Delta-G solvation = -30432.689396 eV Core-core repulsion = 26580.432426 eV Total energy + Delta-G solvation = -3852.256970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56986 -40.62031 -38.47875 -37.72380 -36.74626 -34.17405 -32.17732 -31.48836 -30.50698 -29.45073 -28.46648 -27.18483 -26.20198 -25.45177 -24.38239 -23.28028 -21.74882 -20.84398 -19.70910 -19.09499 -18.49938 -17.82018 -17.60629 -17.15602 -16.62945 -16.58234 -16.24411 -16.05425 -15.81976 -15.57637 -15.39502 -15.09294 -14.65054 -14.28276 -13.81634 -13.67285 -13.59960 -13.43543 -13.40090 -13.25867 -12.79531 -12.70648 -12.55725 -12.53838 -12.35760 -12.18450 -12.12148 -11.98050 -11.67262 -11.55871 -11.34998 -10.74255 -10.54348 -10.45016 -10.23816 -10.04921 -9.72710 -9.31817 -8.22248 -7.56393 -4.78136 -0.63503 0.29533 0.70876 1.42886 1.44596 1.48487 1.50885 2.13932 2.42851 2.63754 2.94748 3.40531 3.61669 3.69027 3.88544 3.96068 3.98928 4.05268 4.18544 4.27910 4.30332 4.38301 4.41748 4.44625 4.52933 4.55962 4.66811 4.75186 4.77866 4.84166 4.95254 4.98180 5.05309 5.10119 5.11189 5.20070 5.40763 5.60000 5.87826 5.95873 6.08544 6.10639 6.46927 6.58899 6.75728 7.39714 7.67639 8.10135 8.73332 9.54571 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006758 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.690223 B = 4142.431003 C = 5882.613108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.606 5.606 4 C 0.520 3.480 5 O -0.425 6.425 6 C -0.286 4.286 7 S 0.294 5.706 8 C -0.022 4.022 9 N -0.502 5.502 10 C 0.103 3.897 11 C 0.141 3.859 12 O -0.392 6.392 13 C 0.038 3.962 14 C 0.152 3.848 15 H 0.140 0.860 16 C -0.147 4.147 17 C 0.204 3.796 18 N -0.577 5.577 19 C -0.180 4.180 20 H 0.052 0.948 21 C -0.049 4.049 22 N -0.943 5.943 23 Si 0.928 3.072 24 H -0.265 1.265 25 H -0.301 1.301 26 H -0.296 1.296 27 C 0.124 3.876 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.016 0.984 42 H -0.015 1.015 43 H 0.231 0.769 44 H 0.036 0.964 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -20.465 -0.487 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 N -0.343 5.343 4 C 0.303 3.697 5 O -0.294 6.294 6 C -0.411 4.411 7 S 0.551 5.449 8 C -0.315 4.315 9 N -0.217 5.217 10 C -0.035 4.035 11 C 0.062 3.938 12 O -0.311 6.311 13 C -0.058 4.058 14 C 0.048 3.952 15 H 0.158 0.842 16 C -0.186 4.186 17 C 0.079 3.921 18 N -0.301 5.301 19 C -0.310 4.310 20 H 0.070 0.930 21 C -0.241 4.241 22 N -0.595 5.595 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.227 1.227 26 H -0.224 1.224 27 C -0.002 4.002 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.034 0.966 42 H 0.003 0.997 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.240 -20.417 -0.424 22.021 hybrid contribution 0.764 2.600 1.228 2.975 sum -7.476 -17.817 0.803 19.338 Atomic orbital electron populations 1.22424 0.94646 1.04392 1.01979 1.22086 0.95567 0.81438 1.04014 1.47758 1.66603 1.14415 1.05500 1.17652 0.81405 0.87659 0.83000 1.91677 1.40041 1.13441 1.84218 1.26194 1.13609 1.02410 0.98901 1.83681 1.52476 1.09026 0.99688 1.29817 1.00133 0.97322 1.04228 1.66081 1.14570 1.04711 1.36328 1.20010 0.99605 0.96333 0.87513 1.20717 0.89248 0.83616 1.00183 1.87761 1.32782 1.16654 1.93862 1.22906 1.00708 0.82743 0.99434 1.22285 0.93582 0.93512 0.85860 0.84200 1.23242 0.96508 0.97766 1.01072 1.20745 0.86244 0.89190 0.95932 1.44223 1.08234 1.19976 1.57686 1.18824 0.94814 0.94043 1.23354 0.92984 1.24949 0.96248 1.00598 1.02316 1.70165 1.03381 1.38836 1.47123 0.86024 0.76959 0.81943 0.79121 1.19148 1.22749 1.22390 1.21959 0.93266 0.90726 0.94268 0.94091 0.91756 0.87549 0.85591 0.90728 0.74664 0.92793 0.91994 0.95186 0.89296 0.92808 0.91272 0.89629 0.96583 0.99741 0.95946 0.94691 0.96070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.99 71.98 0.65 -2.01 16 2 C 0.09 1.62 5.67 86.38 0.49 2.11 16 3 N -0.61 -17.87 2.58 -794.77 -2.05 -19.91 16 4 C 0.52 20.45 7.01 86.45 0.61 21.06 16 5 O -0.43 -21.34 6.33 -4.32 -0.03 -21.37 16 6 C -0.29 -9.90 6.12 23.88 0.15 -9.76 16 7 S 0.29 5.80 15.74 -56.49 -0.89 4.91 16 8 C -0.02 -0.48 12.22 130.60 1.60 1.11 16 9 N -0.50 -16.71 10.50 -190.41 -2.00 -18.71 16 10 C 0.10 4.00 6.42 42.09 0.27 4.27 16 11 C 0.14 6.33 5.65 71.24 0.40 6.73 16 12 O -0.39 -18.56 10.69 -148.98 -1.59 -20.15 16 13 C 0.04 1.68 10.27 113.37 1.16 2.84 16 14 C 0.15 4.57 3.77 46.38 0.17 4.75 16 15 H 0.14 2.78 7.89 -2.39 -0.02 2.76 16 16 C -0.15 -5.14 6.52 31.78 0.21 -4.93 16 17 C 0.20 10.33 4.21 86.73 0.37 10.69 16 18 N -0.58 -30.11 1.73 -691.97 -1.20 -31.31 16 19 C -0.18 -10.65 8.76 84.03 0.74 -9.91 16 20 H 0.05 3.11 7.83 -2.91 -0.02 3.09 16 21 C -0.05 -2.95 5.25 84.86 0.45 -2.50 16 22 N -0.94 -59.20 10.31 21.65 0.22 -58.97 16 23 Si 0.93 48.47 27.16 68.60 1.86 50.33 16 24 H -0.27 -13.05 5.91 99.48 0.59 -12.46 16 25 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 27 C 0.12 5.04 6.19 86.85 0.54 5.58 16 28 H 0.04 0.82 6.15 -4.05 -0.02 0.79 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.13 1.36 7.90 -2.38 -0.02 1.34 16 32 H 0.08 1.25 4.39 -21.31 -0.09 1.16 16 33 H 0.24 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 3.27 6.22 -2.39 -0.01 3.25 16 36 H 0.03 1.50 4.88 -2.39 -0.01 1.49 16 37 H 0.09 3.58 7.89 -2.39 -0.02 3.57 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.02 0.95 5.80 -2.38 -0.01 0.93 16 42 H -0.02 -0.91 7.50 -2.39 -0.02 -0.92 16 43 H 0.23 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -83.20 350.17 2.92 -80.29 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.80 Total: 4.88 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 7.79 Total: 30.02 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.02 Total: -128.91 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.62 Total: -41.52 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.86 Total: 50.33 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -0.89 Total: 4.91 kcal Total: -83.20 2.92 -80.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033979048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.103 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds