Wall clock time and date at job start Tue Mar 31 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47287 * 2 1 4 4 C 1.34776 * 120.00207 * 83.22238 * 3 2 1 5 5 O 1.21633 * 120.00487 * 184.93803 * 4 3 2 6 6 C 1.47273 * 119.99868 * 4.93395 * 4 3 2 7 7 C 1.35208 * 123.14203 * 173.74468 * 6 4 3 8 8 S 1.70936 * 108.82625 * 179.73298 * 7 6 4 9 9 C 1.70765 * 91.13077 * 0.24578 * 8 7 6 10 10 C 1.50699 * 124.72308 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47301 * 269.97269 * 10 9 8 12 12 C 1.42898 * 114.00414 * 179.97438 * 11 10 9 13 13 N 1.28654 * 110.56121 * 359.97438 * 9 8 7 14 14 C 1.46507 * 120.00201 * 263.21986 * 3 2 1 15 15 H 1.08998 * 110.88057 * 10.09592 * 14 3 2 16 16 C 1.55152 * 111.00484 * 246.21344 * 14 3 2 17 17 C 1.54328 * 102.94503 * 277.42759 * 16 14 3 18 18 N 1.47028 * 107.26521 * 337.80678 * 17 16 14 19 19 C 1.36932 * 125.64489 * 178.98716 * 18 17 16 20 20 H 1.08001 * 120.00032 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00223 * 359.97287 * 19 18 17 22 22 N 1.31617 * 119.99786 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00362 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46939 * 90.00494 * 23 21 19 25 25 H 1.48492 * 109.47370 * 210.00520 * 23 21 19 26 26 H 1.48501 * 109.46886 * 330.00568 * 23 21 19 27 27 C 1.47423 * 108.70462 * 358.94247 * 18 17 16 28 28 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47253 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47118 * 59.99606 * 1 2 3 31 31 H 1.09002 * 109.47253 * 239.99901 * 2 1 3 32 32 H 1.09001 * 109.47366 * 119.99925 * 2 1 3 33 33 H 1.08000 * 125.58259 * 359.97438 * 7 6 4 34 34 H 1.09002 * 109.47291 * 29.97094 * 10 9 8 35 35 H 1.09001 * 109.47784 * 149.97283 * 10 9 8 36 36 H 1.08999 * 109.47228 * 299.99846 * 12 11 10 37 37 H 1.08993 * 109.46966 * 60.00154 * 12 11 10 38 38 H 1.09001 * 109.46974 * 179.97438 * 12 11 10 39 39 H 1.08997 * 110.72389 * 35.79025 * 16 14 3 40 40 H 1.09003 * 110.71868 * 159.06409 * 16 14 3 41 41 H 1.08995 * 109.88421 * 97.22468 * 17 16 14 42 42 H 1.08996 * 109.88177 * 218.39609 * 17 16 14 43 43 H 0.97009 * 119.99903 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.36395 * 265.28827 * 27 18 17 45 45 H 1.09006 * 110.36397 * 142.96888 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1131 2.0625 1.1590 5 8 2.4323 3.2361 1.1503 6 6 1.8301 1.3859 2.4361 7 6 2.0230 1.9694 3.6405 8 16 1.5725 0.8665 4.8663 9 6 1.1597 -0.3119 3.7014 10 6 0.6312 -1.6865 4.0208 11 8 1.7238 -2.5974 4.1565 12 6 1.3298 -3.9365 4.4620 13 7 1.3617 0.1374 2.5129 14 6 2.4037 2.0219 -1.2599 15 1 2.1052 1.4126 -2.1129 16 6 3.9270 2.3149 -1.2916 17 6 4.0398 3.6434 -0.5144 18 7 2.7226 4.2943 -0.5694 19 6 2.3974 5.4882 0.0170 20 1 1.3974 5.8840 -0.0824 21 6 3.3529 6.1899 0.7391 22 7 4.5717 5.7079 0.8597 23 14 2.9095 7.8190 1.5384 24 1 2.4083 7.5748 2.9148 25 1 4.1137 8.6859 1.5966 26 1 1.8538 8.4914 0.7392 27 6 1.8103 3.4492 -1.3612 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3964 2.9699 3.8014 34 1 0.0691 -1.6518 4.9541 35 1 -0.0226 -2.0208 3.2152 36 1 0.7825 -3.9482 5.4046 37 1 0.6904 -4.3177 3.6658 38 1 2.2160 -4.5653 4.5482 39 1 4.4824 1.5245 -0.7867 40 1 4.2749 2.4374 -2.3173 41 1 4.3122 3.4446 0.5220 42 1 4.7891 4.2831 -0.9807 43 1 5.2396 6.1985 1.3641 44 1 1.7925 3.7798 -2.3997 45 1 0.8065 3.4738 -0.9371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034054209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:02 Heat of formation + Delta-G solvation = 65.673748 kcal Electronic energy + Delta-G solvation = -29075.307792 eV Core-core repulsion = 25223.998705 eV Total energy + Delta-G solvation = -3851.309087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.45322 -38.95548 -37.95318 -35.84668 -35.04308 -32.08932 -31.42999 -29.77777 -28.67522 -28.18792 -27.18833 -26.25503 -24.99772 -23.94696 -22.80010 -21.26435 -20.06077 -19.74107 -18.97781 -17.44210 -16.86175 -16.49126 -16.23791 -16.07046 -15.87950 -14.99783 -14.91832 -14.42622 -14.24484 -13.81494 -13.58221 -13.55896 -13.44777 -13.01513 -12.78864 -12.41488 -12.02537 -11.91365 -11.81223 -11.68988 -11.60622 -11.56329 -11.33759 -10.89541 -10.67864 -10.65590 -10.54081 -10.09802 -9.98357 -9.90597 -9.61850 -9.56669 -9.35047 -9.22550 -8.83325 -8.60058 -8.29529 -7.66360 -6.17515 -5.34696 -2.58821 0.65380 1.31484 1.73797 2.28139 3.44814 3.56353 3.61054 3.62515 3.68968 4.09830 4.20895 4.66979 4.77698 4.95289 5.00721 5.07864 5.11655 5.32703 5.34637 5.44540 5.53955 5.57863 5.63749 5.77859 5.82698 5.84333 5.94262 5.99161 6.06473 6.19377 6.34355 6.42185 6.64528 6.67655 6.72251 6.73158 6.76506 6.87831 7.46443 7.58394 7.84158 7.97123 8.15934 8.22288 8.61971 9.22407 9.57675 10.19909 10.87159 11.78555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.004152 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.302346 B = 6741.732399 C = 7990.336684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 N -0.598 5.598 4 C 0.533 3.467 5 O -0.394 6.394 6 C 0.023 3.977 7 C -0.217 4.217 8 S 0.204 5.796 9 C -0.002 4.002 10 C 0.146 3.854 11 O -0.383 6.383 12 C 0.032 3.968 13 N -0.413 5.413 14 C 0.134 3.866 15 H 0.081 0.919 16 C -0.161 4.161 17 C 0.192 3.808 18 N -0.566 5.566 19 C -0.185 4.185 20 H 0.066 0.934 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.898 3.102 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.131 3.869 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.192 0.808 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.243 0.757 44 H 0.022 0.978 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 -20.350 6.175 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 N -0.335 5.335 4 C 0.314 3.686 5 O -0.258 6.258 6 C -0.111 4.111 7 C -0.358 4.358 8 S 0.460 5.540 9 C -0.280 4.280 10 C 0.066 3.934 11 O -0.301 6.301 12 C -0.064 4.064 13 N -0.132 5.132 14 C 0.029 3.971 15 H 0.100 0.900 16 C -0.200 4.200 17 C 0.067 3.933 18 N -0.291 5.291 19 C -0.314 4.314 20 H 0.084 0.916 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.731 3.269 24 H -0.224 1.224 25 H -0.222 1.222 26 H -0.213 1.213 27 C 0.003 3.997 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.209 0.791 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.142 -19.727 6.908 22.431 hybrid contribution -0.361 1.014 -0.274 1.111 sum -8.503 -18.712 6.634 21.597 Atomic orbital electron populations 1.22019 0.96934 1.00642 1.01341 1.21873 0.93983 0.83042 1.03168 1.47562 1.66522 1.13612 1.05788 1.17577 0.81659 0.87510 0.81889 1.91711 1.38966 1.11130 1.84017 1.21137 1.03783 0.89709 0.96492 1.26690 1.06508 1.07008 0.95593 1.82630 1.55956 1.04189 1.11253 1.26690 1.07525 1.01402 0.92425 1.20705 0.88457 0.83196 1.01052 1.87983 1.31354 1.18742 1.91996 1.22781 1.01548 0.82885 0.99229 1.67317 1.12465 1.11274 1.22098 1.22292 0.95608 0.94709 0.84464 0.90048 1.23398 0.94841 1.01121 1.00685 1.21083 0.87529 0.87085 0.97584 1.44119 1.06510 1.20458 1.57993 1.18786 0.95402 0.93121 1.24060 0.91644 1.24544 0.96154 0.98367 1.01355 1.69958 1.02468 1.38315 1.46464 0.86306 0.76654 0.84442 0.79548 1.22368 1.22216 1.21271 1.21758 0.94361 0.88822 0.94742 0.92890 0.92780 0.93608 0.92399 0.87419 0.79116 0.91161 0.90196 0.93850 0.93674 0.89264 0.92494 0.92029 0.92696 0.95188 0.94670 0.96095 0.94803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.69 37.15 0.36 -1.64 16 2 C 0.10 1.51 5.69 -4.05 -0.02 1.48 16 3 N -0.60 -10.96 2.58 -164.99 -0.42 -11.38 16 4 C 0.53 11.22 7.04 -12.59 -0.09 11.13 16 5 O -0.39 -10.08 8.69 5.25 0.05 -10.03 16 6 C 0.02 0.42 6.37 -84.52 -0.54 -0.12 16 7 C -0.22 -3.59 10.62 29.65 0.31 -3.27 16 8 S 0.20 2.46 22.92 -107.50 -2.46 -0.01 16 9 C 0.00 -0.03 6.97 -13.61 -0.09 -0.12 16 10 C 0.15 1.35 6.51 36.01 0.23 1.58 16 11 O -0.38 -3.97 10.69 -35.23 -0.38 -4.34 16 12 C 0.03 0.20 11.01 101.05 1.11 1.32 16 13 N -0.41 -6.25 5.43 -8.51 -0.05 -6.29 16 14 C 0.13 2.51 3.77 -65.78 -0.25 2.26 16 15 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 16 C -0.16 -3.26 6.52 -24.90 -0.16 -3.42 16 17 C 0.19 4.99 4.22 -3.06 -0.01 4.98 16 18 N -0.57 -15.16 1.73 -170.07 -0.29 -15.46 16 19 C -0.18 -5.44 8.74 -15.06 -0.13 -5.58 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -28.61 10.31 55.49 0.57 -28.03 16 23 Si 0.90 23.59 29.55 -169.99 -5.02 18.56 16 24 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C 0.13 2.91 6.18 -2.53 -0.02 2.89 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.81 7.06 -51.93 -0.37 0.44 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.11 1.65 5.16 -51.93 -0.27 1.39 16 33 H 0.19 3.41 8.04 -52.49 -0.42 2.98 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.61 5.84 -51.93 -0.30 1.31 16 42 H 0.03 0.87 7.50 -51.93 -0.39 0.48 16 43 H 0.24 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -35.02 367.14 -8.63 -43.66 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.77 Total: -3.31 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 0.61 Total: 11.10 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.19 Total: -61.17 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.33 Total: -14.37 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.56 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.46 Total: -0.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.02 -8.63 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034054209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.329 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds