Wall clock time and date at job start Tue Mar 31 2020 23:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35721 * 117.00145 * 2 1 4 4 C 1.39355 * 120.35912 * 0.02562 * 3 2 1 5 5 N 1.31290 * 120.88237 * 180.02562 * 4 3 2 6 6 C 1.32881 * 121.71764 * 359.97438 * 5 4 3 7 7 C 1.47758 * 119.69005 * 179.97438 * 6 5 4 8 8 O 1.21566 * 120.00720 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99724 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47357 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.51076 * 305.10676 * 11 10 9 13 13 C 1.53297 * 109.51837 * 184.99928 * 11 10 9 14 14 N 1.47150 * 108.38389 * 187.72271 * 13 11 10 15 15 C 1.36938 * 120.97958 * 230.51296 * 14 13 11 16 16 H 1.07996 * 119.99416 * 153.64134 * 15 14 13 17 17 C 1.38805 * 119.99903 * 333.91044 * 15 14 13 18 18 N 1.31622 * 120.00630 * 342.82560 * 17 15 14 19 19 Si 1.86809 * 119.99701 * 162.82502 * 17 15 14 20 20 H 1.48500 * 109.47242 * 60.00087 * 19 17 15 21 21 H 1.48498 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46785 * 300.00268 * 19 17 15 23 23 C 1.47153 * 118.03738 * 50.79398 * 14 13 11 24 24 C 1.53716 * 108.15464 * 309.15395 * 23 14 13 25 25 O 1.42954 * 109.15071 * 52.53895 * 24 23 14 26 26 C 1.39721 * 120.62759 * 0.26267 * 6 5 4 27 27 F 1.35105 * 120.46731 * 179.73935 * 26 6 5 28 28 C 1.38688 * 119.06375 * 359.48690 * 26 6 5 29 29 H 1.09008 * 109.46762 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46998 * 299.99914 * 1 2 3 31 31 H 1.08998 * 109.46581 * 60.00184 * 1 2 3 32 32 H 1.08003 * 119.56013 * 359.97438 * 4 3 2 33 33 H 0.96999 * 120.00134 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.47272 * 60.00630 * 10 9 7 35 35 H 1.08998 * 109.47580 * 300.00053 * 10 9 7 36 36 H 1.09001 * 109.67341 * 67.99955 * 13 11 10 37 37 H 1.08995 * 109.70996 * 307.47198 * 13 11 10 38 38 H 0.96992 * 120.00430 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.68585 * 68.92759 * 23 14 13 40 40 H 1.08997 * 109.68117 * 189.48802 * 23 14 13 41 41 H 1.09001 * 109.66024 * 292.56678 * 24 23 14 42 42 H 1.09005 * 109.48103 * 172.40478 * 24 23 14 43 43 H 1.08000 * 120.78487 * 180.24293 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3827 0.0005 5 7 1.8790 3.5579 0.0000 6 6 3.2022 3.6793 -0.0005 7 6 3.8138 5.0243 -0.0016 8 8 5.0238 5.1420 -0.0026 9 7 3.0302 6.1209 -0.0016 10 6 3.6365 7.4545 -0.0021 11 6 2.5344 8.5158 -0.0026 12 1 1.8624 8.3424 -0.8431 13 6 3.1640 9.9078 -0.1291 14 7 2.1071 10.9141 0.0596 15 6 1.9371 11.9345 -0.8377 16 1 0.9671 12.3947 -0.9546 17 6 3.0101 12.3735 -1.6009 18 7 4.2398 12.0670 -1.2454 19 14 2.7090 13.3996 -3.1327 20 1 1.9989 14.6493 -2.7597 21 1 4.0093 13.7383 -3.7650 22 1 1.8794 12.6261 -4.0913 23 6 1.2422 10.7951 1.2442 24 6 0.7029 9.3568 1.3009 25 8 1.7982 8.4417 1.2206 26 6 4.0209 2.5470 -0.0060 27 9 5.3659 2.6742 -0.0118 28 6 3.4333 1.2908 -0.0001 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 0.2152 2.3247 0.0005 33 1 2.0647 6.0271 -0.0004 34 1 4.2542 7.5724 -0.8925 35 1 4.2550 7.5729 0.8876 36 1 3.6070 10.0217 -1.1185 37 1 3.9321 10.0346 0.6338 38 1 4.9896 12.3735 -1.7790 39 1 1.8198 11.0093 2.1434 40 1 0.4121 11.4969 1.1646 41 1 0.0241 9.1865 0.4652 42 1 0.1698 9.2052 2.2395 43 1 4.0395 0.3970 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035394215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:44 Heat of formation + Delta-G solvation = -90.917230 kcal Electronic energy + Delta-G solvation = -29106.665103 eV Core-core repulsion = 24682.352545 eV Total energy + Delta-G solvation = -4424.312558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.22267 -41.20862 -39.63802 -38.57442 -38.06021 -34.81926 -34.30601 -32.84666 -31.46881 -31.19390 -30.46793 -28.21177 -27.34068 -25.82658 -24.67239 -23.47629 -23.22639 -21.74421 -20.83485 -19.70388 -19.03309 -18.35487 -17.98467 -16.93246 -16.71883 -16.59715 -16.05191 -15.84016 -15.71649 -15.38117 -15.09815 -14.90991 -14.67049 -14.31744 -14.01595 -13.74419 -13.72777 -13.56938 -13.23693 -13.12190 -12.83997 -12.75335 -12.60749 -12.29322 -12.00121 -11.51594 -11.09808 -10.82595 -10.73667 -10.49914 -10.38650 -10.28855 -10.04302 -9.99109 -9.84832 -9.63650 -9.10053 -9.05421 -8.77698 -8.54125 -6.75498 -5.84331 -3.28259 0.17928 0.52259 2.36474 2.53110 3.09225 3.35474 3.41728 3.42418 3.45238 3.70426 3.79392 3.96941 4.26439 4.36817 4.44191 4.46254 4.52748 4.56153 4.84284 4.93105 5.17499 5.20689 5.34881 5.36945 5.56672 5.66015 5.86061 5.87908 5.95196 6.03501 6.13523 6.25029 6.37302 6.47104 6.51798 6.65630 6.79180 7.07411 7.12471 7.48403 7.67178 7.70719 7.86536 8.27341 8.33372 9.10707 9.73794 10.31000 11.23648 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.002391 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.250488 B =11708.223520 C =12319.037319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.129 3.871 4 C 0.010 3.990 5 N -0.390 5.390 6 C 0.013 3.987 7 C 0.567 3.433 8 O -0.527 6.527 9 N -0.697 5.697 10 C 0.130 3.870 11 C 0.056 3.944 12 H 0.057 0.943 13 C 0.152 3.848 14 N -0.594 5.594 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.389 6.389 26 C 0.156 3.844 27 F -0.096 7.096 28 C -0.161 4.161 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.173 0.827 33 H 0.411 0.589 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.257 0.743 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -24.658 2.811 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.080 3.920 4 C -0.153 4.153 5 N -0.101 5.101 6 C -0.127 4.127 7 C 0.350 3.650 8 O -0.403 6.403 9 N -0.347 5.347 10 C 0.007 3.993 11 C -0.004 4.004 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.017 4.017 24 C -0.028 4.028 25 O -0.309 6.309 26 C 0.133 3.867 27 F -0.074 7.074 28 C -0.188 4.188 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.190 0.810 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.000 -24.000 2.867 25.460 hybrid contribution -0.227 0.022 -0.943 0.970 sum -8.227 -23.978 1.924 25.423 Atomic orbital electron populations 1.23282 0.76884 1.05055 1.02279 1.86067 1.22519 1.25452 1.87342 1.20010 0.92062 0.86120 0.93832 1.23076 1.01145 0.86384 1.04699 1.67505 1.09363 1.26839 1.06381 1.21356 0.89344 0.94246 1.07750 1.17491 0.86394 0.83086 0.77992 1.90871 1.13099 1.86218 1.50125 1.45798 1.10974 1.05373 1.72602 1.21507 0.95452 0.78938 1.03396 1.23141 0.93004 0.97496 0.86737 0.92519 1.21309 0.89979 0.83086 1.03043 1.44057 1.36660 1.28205 1.22896 1.19136 0.93980 1.11330 1.14208 0.91404 1.25061 0.95028 0.98897 1.00598 1.70005 0.97348 1.48766 1.38426 0.86333 0.76947 0.80079 0.83190 1.20816 1.21504 1.20970 1.21690 0.94914 0.94211 0.90922 1.23078 0.88255 0.91168 1.00280 1.87790 1.44951 1.59707 1.38419 1.18244 0.78835 0.92718 0.96948 1.91662 1.27114 1.96403 1.92243 1.20823 0.92901 0.97748 1.07315 0.87354 0.91699 0.91717 0.80967 0.75282 0.89570 0.90366 0.88560 0.94990 0.93313 0.95511 0.91986 0.93830 0.90075 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.05 16 2 O -0.30 -1.99 10.50 -18.87 -0.20 -2.18 16 3 C 0.13 1.05 6.72 -38.87 -0.26 0.78 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -4.51 9.52 -9.63 -0.09 -4.60 16 6 C 0.01 0.17 6.75 -82.97 -0.56 -0.39 16 7 C 0.57 9.33 7.80 -12.37 -0.10 9.23 16 8 O -0.53 -10.26 15.30 5.31 0.08 -10.18 16 9 N -0.70 -11.05 5.50 -61.28 -0.34 -11.38 16 10 C 0.13 2.30 5.35 -4.04 -0.02 2.28 16 11 C 0.06 1.08 2.81 -26.58 -0.07 1.00 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 13 C 0.15 3.62 4.73 -3.53 -0.02 3.60 16 14 N -0.59 -14.87 3.04 -171.58 -0.52 -15.39 16 15 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 18 N -0.90 -25.94 11.15 55.49 0.62 -25.32 16 19 Si 0.91 21.44 29.59 -169.99 -5.03 16.41 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.11 2.27 6.76 -3.31 -0.02 2.25 16 24 C 0.05 0.89 7.00 37.53 0.26 1.15 16 25 O -0.39 -7.41 10.34 -35.23 -0.36 -7.77 16 26 C 0.16 1.91 7.31 -38.86 -0.28 1.62 16 27 F -0.10 -1.36 15.54 2.25 0.03 -1.32 16 28 C -0.16 -1.47 10.10 -39.12 -0.40 -1.87 16 29 H 0.11 0.11 8.14 -51.92 -0.42 -0.32 16 30 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 31 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 32 H 0.17 0.86 6.31 -52.48 -0.33 0.52 16 33 H 0.41 5.99 7.79 -40.82 -0.32 5.67 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -33.29 364.66 -6.73 -40.02 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.53 Total: 2.73 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -0.89 Total: 13.50 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.33 Total: -56.69 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.48 Total: -20.13 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.03 Total: -1.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.29 -6.73 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035394215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.901 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds